Wall clock time and date at job start Wed Apr 1 2020 05:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.57911 * 2 1 4 4 C 1.53190 * 109.60006 * 120.43281 * 2 1 3 5 5 C 1.53038 * 109.31183 * 65.13817 * 4 2 1 6 6 H 1.09006 * 109.45814 * 301.36631 * 5 4 2 7 7 N 1.46502 * 109.46162 * 181.39983 * 5 4 2 8 8 C 1.34771 * 120.00045 * 154.96829 * 7 5 4 9 9 O 1.21677 * 120.00533 * 0.02562 * 8 7 5 10 10 C 1.46825 * 119.99741 * 180.02562 * 8 7 5 11 11 C 1.41303 * 126.50197 * 359.97028 * 10 8 7 12 12 N 1.30368 * 108.46388 * 180.02562 * 11 10 8 13 13 N 1.39984 * 109.30613 * 359.97438 * 12 11 10 14 14 C 1.35982 * 108.17038 * 0.02562 * 13 12 11 15 15 N 1.37182 * 120.55918 * 179.97438 * 14 13 12 16 16 H 0.97000 * 119.88299 * 180.02562 * 15 14 13 17 17 C 1.36356 * 120.23564 * 359.97438 * 15 14 13 18 18 C 1.35239 * 119.83162 * 0.29950 * 17 15 14 19 19 C 1.34865 * 131.92680 * 179.97438 * 13 12 11 20 20 O 1.21817 * 120.11471 * 359.97438 * 19 13 12 21 21 C 1.53032 * 109.53218 * 61.38029 * 5 4 2 22 22 C 1.53196 * 109.31351 * 298.63400 * 21 5 4 23 23 N 1.46918 * 108.77569 * 54.63099 * 22 21 5 24 24 C 1.36941 * 120.62947 * 126.41468 * 23 22 21 25 25 H 1.07996 * 119.99937 * 207.67001 * 24 23 22 26 26 C 1.38809 * 119.99707 * 27.67944 * 24 23 22 27 27 N 1.31613 * 120.00650 * 17.34995 * 26 24 23 28 28 Si 1.86807 * 119.99466 * 197.35268 * 26 24 23 29 29 H 1.48501 * 109.47182 * 90.00264 * 28 26 24 30 30 H 1.48508 * 109.46938 * 209.99648 * 28 26 24 31 31 H 1.48489 * 109.47275 * 329.99624 * 28 26 24 32 32 H 1.08999 * 109.46587 * 180.28312 * 1 2 3 33 33 H 1.09004 * 109.46885 * 300.27795 * 1 2 3 34 34 H 1.08992 * 109.47574 * 60.28467 * 1 2 3 35 35 H 1.08996 * 109.48528 * 305.18765 * 4 2 1 36 36 H 1.09001 * 109.50779 * 185.09026 * 4 2 1 37 37 H 0.97003 * 119.99230 * 334.97068 * 7 5 4 38 38 H 1.08002 * 125.76634 * 359.97438 * 11 10 8 39 39 H 1.08001 * 120.08323 * 180.02562 * 17 15 14 40 40 H 1.08001 * 120.14917 * 179.72812 * 18 17 15 41 41 H 1.09007 * 109.49358 * 58.57730 * 21 5 4 42 42 H 1.08998 * 109.50080 * 178.67528 * 21 5 4 43 43 H 1.09003 * 109.58168 * 174.41964 * 22 21 5 44 44 H 1.08998 * 109.58289 * 294.69622 * 22 21 5 45 45 H 0.97003 * 120.00217 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0439 -0.7310 1.2443 5 6 1.6417 -2.2055 1.1673 6 1 0.5567 -2.2827 1.0963 7 7 2.1026 -2.9008 2.3716 8 6 1.4748 -4.0191 2.7860 9 8 0.5255 -4.4516 2.1597 10 6 1.9364 -4.7155 3.9934 11 6 3.0181 -4.3372 4.8202 12 7 3.1177 -5.2016 5.7910 13 7 2.1201 -6.1734 5.6495 14 6 1.3912 -5.8747 4.5411 15 7 0.3395 -6.6700 4.1627 16 1 -0.1736 -6.4479 3.3701 17 6 0.0135 -7.7723 4.8962 18 6 0.7264 -8.0782 6.0040 19 6 1.8099 -7.2602 6.3855 20 8 2.4613 -7.5323 7.3783 21 6 2.2802 -2.8462 -0.0671 22 6 1.7693 -2.1392 -1.3265 23 7 2.0226 -0.6980 -1.1954 24 6 2.7044 -0.0180 -2.1691 25 1 3.2695 0.8666 -1.9150 26 6 2.6691 -0.4657 -3.4825 27 7 1.7365 -1.3122 -3.8645 28 14 3.9454 0.1334 -4.7080 29 1 5.1161 -0.7800 -4.6898 30 1 3.3534 0.1521 -6.0699 31 1 4.3810 1.5041 -4.3388 32 1 -0.3632 -1.0277 0.0051 33 1 -0.3633 0.5182 0.8875 34 1 -0.3634 0.5094 -0.8924 35 1 1.6081 -0.2810 2.1363 36 1 3.1301 -0.6522 1.2901 37 1 2.8596 -2.5561 2.8707 38 1 3.6553 -3.4778 4.6723 39 1 -0.8147 -8.3970 4.5958 40 1 0.4699 -8.9475 6.5913 41 1 3.3642 -2.7472 -0.0088 42 1 2.0125 -3.9020 -0.1087 43 1 2.2946 -2.5246 -2.2004 44 1 0.6993 -2.3159 -1.4360 45 1 1.7121 -1.6253 -4.7822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947787751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:07 Heat of formation + Delta-G solvation = 57.599543 kcal Electronic energy + Delta-G solvation = -30139.508897 eV Core-core repulsion = 25966.930956 eV Total energy + Delta-G solvation = -4172.577941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.08203 -39.89336 -39.03409 -38.38303 -37.65904 -34.55066 -33.29604 -32.55206 -31.88423 -30.96957 -30.10669 -29.18842 -26.95487 -24.90968 -24.83292 -23.98390 -22.89573 -21.99138 -21.64104 -20.52827 -19.41709 -18.63343 -18.37630 -17.78141 -17.20269 -17.05193 -16.64786 -16.08276 -15.82929 -14.82187 -14.76891 -14.28386 -14.19452 -14.00307 -13.90235 -13.81636 -13.75889 -13.64628 -13.50559 -13.08775 -12.64570 -12.51317 -12.24299 -11.51818 -11.44061 -11.09186 -10.95853 -10.88222 -10.81017 -10.64703 -10.47193 -10.38002 -10.20050 -10.10251 -9.94774 -9.86802 -9.74521 -9.40007 -8.82768 -8.48689 -8.36952 -6.71852 -5.80783 -3.23159 0.37812 0.56804 1.47824 1.77021 2.09296 2.85697 3.22754 3.31487 3.36726 3.43843 3.44542 3.69324 4.01198 4.26560 4.32461 4.46872 4.58514 4.87028 4.98784 5.09650 5.28099 5.36181 5.38648 5.57369 5.62684 5.75928 5.85175 5.98897 6.04384 6.21538 6.24330 6.30320 6.39366 6.43588 6.47040 6.55942 6.62527 6.63829 6.75857 6.84841 6.92420 7.12901 7.36036 7.41183 7.62633 7.68317 7.78393 8.28525 8.43371 9.19334 9.82738 10.38911 11.27408 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.002270 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.597256 B =12331.648728 C =12430.639742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.066 0.934 4 C -0.133 4.133 5 C 0.151 3.849 6 H 0.087 0.913 7 N -0.714 5.714 8 C 0.597 3.403 9 O -0.560 6.560 10 C -0.304 4.304 11 C 0.128 3.872 12 N -0.263 5.263 13 N -0.358 5.358 14 C 0.370 3.630 15 N -0.586 5.586 16 H 0.449 0.551 17 C 0.191 3.809 18 C -0.307 4.307 19 C 0.563 3.437 20 O -0.490 6.490 21 C -0.147 4.147 22 C 0.174 3.826 23 N -0.585 5.585 24 C -0.252 4.252 25 H 0.066 0.934 26 C 0.004 3.996 27 N -0.900 5.900 28 Si 0.901 3.099 29 H -0.288 1.288 30 H -0.292 1.292 31 H -0.279 1.279 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.395 0.605 38 H 0.207 0.793 39 H 0.192 0.808 40 H 0.180 0.820 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.089 0.911 44 H 0.021 0.979 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 -10.315 16.880 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.049 3.951 6 H 0.105 0.895 7 N -0.362 5.362 8 C 0.384 3.616 9 O -0.440 6.440 10 C -0.322 4.322 11 C -0.063 4.063 12 N -0.079 5.079 13 N -0.158 5.158 14 C 0.145 3.855 15 N -0.204 5.204 16 H 0.292 0.708 17 C 0.062 3.938 18 C -0.337 4.337 19 C 0.362 3.638 20 O -0.360 6.360 21 C -0.187 4.187 22 C 0.048 3.952 23 N -0.306 5.306 24 C -0.382 4.382 25 H 0.084 0.916 26 C -0.195 4.195 27 N -0.545 5.545 28 Si 0.731 3.269 29 H -0.215 1.215 30 H -0.218 1.218 31 H -0.205 1.205 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.224 0.776 39 H 0.209 0.791 40 H 0.197 0.803 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.039 0.961 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.998 -11.273 18.009 21.619 hybrid contribution 0.339 0.660 -1.511 1.684 sum -3.659 -10.613 16.498 19.955 Atomic orbital electron populations 1.22308 0.98729 1.01072 1.00093 1.20440 0.91767 0.95145 0.86491 0.91612 1.22307 1.01284 0.94067 0.99645 1.21138 0.99875 0.91262 0.82863 0.89501 1.46039 1.34416 1.26568 1.29214 1.16810 0.82244 0.80356 0.82172 1.90740 1.28933 1.66702 1.57612 1.19635 1.06269 1.00905 1.05412 1.24289 0.94691 0.97551 0.89765 1.77593 1.07504 0.99835 1.22999 1.48098 1.24396 1.22874 1.20429 1.18755 0.86853 0.91559 0.88292 1.41193 1.27919 1.22276 1.29042 0.70819 1.22475 0.96433 0.85552 0.89325 1.21680 1.01342 1.07249 1.03385 1.17173 0.85462 0.78105 0.83103 1.90921 1.51560 1.69149 1.24406 1.22577 1.00251 0.99116 0.96776 1.20735 0.97702 0.82907 0.93906 1.44169 1.63768 1.03476 1.19215 1.19174 1.22033 1.10253 0.86745 0.91607 1.25036 0.97683 1.00021 0.96793 1.70031 1.31691 1.35826 1.16906 0.86311 0.81375 0.78499 0.80692 1.21493 1.21835 1.20455 0.93219 0.94494 0.92626 0.92484 0.91761 0.77145 0.77605 0.79066 0.80264 0.92609 0.92930 0.89329 0.96110 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.03 37.16 0.34 -2.61 16 2 C 0.17 3.23 3.29 -67.60 -0.22 3.01 16 3 H 0.07 1.26 7.93 -51.93 -0.41 0.84 16 4 C -0.13 -2.02 5.02 -26.61 -0.13 -2.16 16 5 C 0.15 2.37 2.21 -67.89 -0.15 2.22 16 6 H 0.09 1.53 5.92 -51.93 -0.31 1.22 16 7 N -0.71 -8.80 5.07 -55.03 -0.28 -9.08 16 8 C 0.60 7.80 7.76 -12.79 -0.10 7.70 16 9 O -0.56 -8.74 15.47 5.21 0.08 -8.65 16 10 C -0.30 -3.39 6.15 -104.86 -0.64 -4.04 16 11 C 0.13 1.26 11.47 -17.01 -0.20 1.07 16 12 N -0.26 -3.40 12.54 30.85 0.39 -3.01 16 13 N -0.36 -4.46 3.79 -13.82 -0.05 -4.51 16 14 C 0.37 3.94 7.78 -153.53 -1.20 2.75 16 15 N -0.59 -4.12 5.39 -11.73 -0.06 -4.18 16 16 H 0.45 2.84 7.78 -40.82 -0.32 2.52 16 17 C 0.19 0.77 11.25 -16.61 -0.19 0.58 16 18 C -0.31 -2.09 9.95 -39.60 -0.39 -2.48 16 19 C 0.56 6.87 7.70 -15.17 -0.12 6.76 16 20 O -0.49 -7.78 17.90 5.08 0.09 -7.68 16 21 C -0.15 -2.71 5.65 -26.61 -0.15 -2.86 16 22 C 0.17 3.97 4.89 -3.71 -0.02 3.95 16 23 N -0.58 -13.63 2.70 -164.78 -0.45 -14.07 16 24 C -0.25 -6.59 9.58 -15.06 -0.14 -6.73 16 25 H 0.07 1.69 7.89 -52.49 -0.41 1.28 16 26 C 0.00 0.09 4.91 -17.43 -0.09 0.01 16 27 N -0.90 -25.40 11.19 55.49 0.62 -24.78 16 28 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 30 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 31 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 32 H 0.05 0.93 5.73 -51.93 -0.30 0.63 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.39 3.66 7.54 -40.82 -0.31 3.36 16 38 H 0.21 1.17 7.48 -52.49 -0.39 0.78 16 39 H 0.19 -0.23 8.06 -52.49 -0.42 -0.65 16 40 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 2.31 6.04 -51.93 -0.31 1.99 16 44 H 0.02 0.51 7.51 -51.93 -0.39 0.12 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 368.69 15.07 5.56 5.56 Total: -1.00 -35.98 368.69 -8.20 -44.19 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -5.67 Total: 2.96 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -3.40 Total: 7.17 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.17 Total: -59.64 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.17 Total: -16.34 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.98 -8.20 -44.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947787751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.785 kcal (2) G-P(sol) polarization free energy of solvation -35.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds