Wall clock time and date at job start Wed Apr 1 2020 05:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.57911 * 2 1 4 4 C 1.53190 * 109.60006 * 120.43281 * 2 1 3 5 5 C 1.53038 * 109.31183 * 65.13817 * 4 2 1 6 6 H 1.09006 * 109.45814 * 301.36631 * 5 4 2 7 7 N 1.46502 * 109.46162 * 181.39983 * 5 4 2 8 8 C 1.34771 * 120.00045 * 154.96829 * 7 5 4 9 9 O 1.21677 * 120.00533 * 0.02562 * 8 7 5 10 10 C 1.46825 * 119.99741 * 180.02562 * 8 7 5 11 11 C 1.41303 * 126.50197 * 359.97028 * 10 8 7 12 12 N 1.30368 * 108.46388 * 180.02562 * 11 10 8 13 13 N 1.39984 * 109.30613 * 359.97438 * 12 11 10 14 14 C 1.35982 * 108.17038 * 0.02562 * 13 12 11 15 15 N 1.37182 * 120.55918 * 179.97438 * 14 13 12 16 16 H 0.97000 * 119.88299 * 180.02562 * 15 14 13 17 17 C 1.36356 * 120.23564 * 359.97438 * 15 14 13 18 18 C 1.35239 * 119.83162 * 0.29950 * 17 15 14 19 19 C 1.34865 * 131.92680 * 179.97438 * 13 12 11 20 20 O 1.21817 * 120.11471 * 359.97438 * 19 13 12 21 21 C 1.53032 * 109.53218 * 61.38029 * 5 4 2 22 22 C 1.53196 * 109.31351 * 298.63400 * 21 5 4 23 23 N 1.46918 * 108.77569 * 54.63099 * 22 21 5 24 24 C 1.36941 * 120.62947 * 126.41468 * 23 22 21 25 25 H 1.07996 * 119.99937 * 207.67001 * 24 23 22 26 26 C 1.38809 * 119.99707 * 27.67944 * 24 23 22 27 27 N 1.31613 * 120.00650 * 17.34995 * 26 24 23 28 28 Si 1.86807 * 119.99466 * 197.35268 * 26 24 23 29 29 H 1.48501 * 109.47182 * 90.00264 * 28 26 24 30 30 H 1.48508 * 109.46938 * 209.99648 * 28 26 24 31 31 H 1.48489 * 109.47275 * 329.99624 * 28 26 24 32 32 H 1.08999 * 109.46587 * 180.28312 * 1 2 3 33 33 H 1.09004 * 109.46885 * 300.27795 * 1 2 3 34 34 H 1.08992 * 109.47574 * 60.28467 * 1 2 3 35 35 H 1.08996 * 109.48528 * 305.18765 * 4 2 1 36 36 H 1.09001 * 109.50779 * 185.09026 * 4 2 1 37 37 H 0.97003 * 119.99230 * 334.97068 * 7 5 4 38 38 H 1.08002 * 125.76634 * 359.97438 * 11 10 8 39 39 H 1.08001 * 120.08323 * 180.02562 * 17 15 14 40 40 H 1.08001 * 120.14917 * 179.72812 * 18 17 15 41 41 H 1.09007 * 109.49358 * 58.57730 * 21 5 4 42 42 H 1.08998 * 109.50080 * 178.67528 * 21 5 4 43 43 H 1.09003 * 109.58168 * 174.41964 * 22 21 5 44 44 H 1.08998 * 109.58289 * 294.69622 * 22 21 5 45 45 H 0.97003 * 120.00217 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0439 -0.7310 1.2443 5 6 1.6417 -2.2055 1.1673 6 1 0.5567 -2.2827 1.0963 7 7 2.1026 -2.9008 2.3716 8 6 1.4748 -4.0191 2.7860 9 8 0.5255 -4.4516 2.1597 10 6 1.9364 -4.7155 3.9934 11 6 3.0181 -4.3372 4.8202 12 7 3.1177 -5.2016 5.7910 13 7 2.1201 -6.1734 5.6495 14 6 1.3912 -5.8747 4.5411 15 7 0.3395 -6.6700 4.1627 16 1 -0.1736 -6.4479 3.3701 17 6 0.0135 -7.7723 4.8962 18 6 0.7264 -8.0782 6.0040 19 6 1.8099 -7.2602 6.3855 20 8 2.4613 -7.5323 7.3783 21 6 2.2802 -2.8462 -0.0671 22 6 1.7693 -2.1392 -1.3265 23 7 2.0226 -0.6980 -1.1954 24 6 2.7044 -0.0180 -2.1691 25 1 3.2695 0.8666 -1.9150 26 6 2.6691 -0.4657 -3.4825 27 7 1.7365 -1.3122 -3.8645 28 14 3.9454 0.1334 -4.7080 29 1 5.1161 -0.7800 -4.6898 30 1 3.3534 0.1521 -6.0699 31 1 4.3810 1.5041 -4.3388 32 1 -0.3632 -1.0277 0.0051 33 1 -0.3633 0.5182 0.8875 34 1 -0.3634 0.5094 -0.8924 35 1 1.6081 -0.2810 2.1363 36 1 3.1301 -0.6522 1.2901 37 1 2.8596 -2.5561 2.8707 38 1 3.6553 -3.4778 4.6723 39 1 -0.8147 -8.3970 4.5958 40 1 0.4699 -8.9475 6.5913 41 1 3.3642 -2.7472 -0.0088 42 1 2.0125 -3.9020 -0.1087 43 1 2.2946 -2.5246 -2.2004 44 1 0.6993 -2.3159 -1.4360 45 1 1.7121 -1.6253 -4.7822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947787751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:06 Heat of formation + Delta-G solvation = 31.310053 kcal Electronic energy + Delta-G solvation = -30140.648895 eV Core-core repulsion = 25966.930956 eV Total energy + Delta-G solvation = -4173.717939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.86789 -40.96371 -40.01113 -39.14719 -39.01263 -35.95258 -34.36766 -34.02376 -32.56508 -32.42200 -31.52847 -30.37221 -28.45378 -26.28669 -25.56495 -25.26941 -23.76655 -23.59298 -22.94697 -21.53474 -20.36041 -19.84956 -19.19758 -18.90432 -18.32157 -17.91517 -17.88094 -17.20067 -16.86433 -16.54535 -15.90217 -15.65380 -15.44398 -15.13461 -14.96637 -14.84571 -14.60441 -14.47367 -14.29738 -14.26882 -14.12765 -14.06521 -13.81647 -13.11008 -12.86999 -12.63311 -12.50252 -12.36853 -12.21816 -11.99036 -11.94136 -11.78767 -11.68538 -11.42563 -11.24057 -11.10573 -10.85829 -10.74728 -10.51344 -9.95107 -9.17763 -8.63830 -7.82218 -5.26090 -0.27499 -0.15888 0.72590 0.97065 1.46450 1.49242 1.51121 1.58901 2.10077 2.21229 2.36913 2.54718 3.04001 3.33084 3.37146 3.65393 3.68165 3.72601 3.88106 3.95333 4.17539 4.22017 4.37417 4.44435 4.52942 4.54689 4.59424 4.77418 4.84650 4.91551 4.98259 5.01361 5.17443 5.20942 5.21958 5.24056 5.40751 5.52272 5.57264 5.63765 5.67966 5.73259 5.77451 5.83822 5.86763 6.45259 6.59217 6.67567 7.20699 7.29789 7.93454 8.44165 9.23972 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022991 B = 0.002270 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.597256 B =12331.648728 C =12430.639742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.067 0.933 4 C -0.120 4.120 5 C 0.166 3.834 6 H 0.070 0.930 7 N -0.702 5.702 8 C 0.601 3.399 9 O -0.587 6.587 10 C -0.320 4.320 11 C 0.146 3.854 12 N -0.312 5.312 13 N -0.369 5.369 14 C 0.370 3.630 15 N -0.577 5.577 16 H 0.455 0.545 17 C 0.226 3.774 18 C -0.322 4.322 19 C 0.544 3.456 20 O -0.549 6.549 21 C -0.132 4.132 22 C 0.184 3.816 23 N -0.600 5.600 24 C -0.254 4.254 25 H 0.071 0.929 26 C -0.052 4.052 27 N -0.935 5.935 28 Si 0.961 3.039 29 H -0.288 1.288 30 H -0.300 1.300 31 H -0.267 1.267 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.245 0.755 39 H 0.257 0.743 40 H 0.205 0.795 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.050 0.950 44 H -0.007 1.007 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -10.247 18.260 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.085 0.915 4 C -0.159 4.159 5 C 0.061 3.939 6 H 0.088 0.912 7 N -0.352 5.352 8 C 0.390 3.610 9 O -0.470 6.470 10 C -0.338 4.338 11 C -0.043 4.043 12 N -0.128 5.128 13 N -0.168 5.168 14 C 0.144 3.856 15 N -0.195 5.195 16 H 0.300 0.700 17 C 0.098 3.902 18 C -0.350 4.350 19 C 0.346 3.654 20 O -0.425 6.425 21 C -0.172 4.172 22 C 0.058 3.942 23 N -0.322 5.322 24 C -0.384 4.384 25 H 0.088 0.912 26 C -0.247 4.247 27 N -0.582 5.582 28 Si 0.790 3.210 29 H -0.215 1.215 30 H -0.227 1.227 31 H -0.192 1.192 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.250 0.750 38 H 0.261 0.739 39 H 0.273 0.727 40 H 0.222 0.778 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.011 0.989 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.427 -11.181 19.420 22.842 hybrid contribution 0.363 0.630 -1.960 2.090 sum -4.064 -10.550 17.461 20.802 Atomic orbital electron populations 1.22190 0.98129 1.00487 1.00444 1.20715 0.92248 0.95449 0.86336 0.91474 1.22139 1.01986 0.93001 0.98762 1.20720 0.98605 0.91732 0.82804 0.91150 1.45700 1.35018 1.26315 1.28163 1.16954 0.81693 0.80113 0.82266 1.90730 1.30226 1.67424 1.58588 1.19448 1.07432 1.01592 1.05325 1.24894 0.93982 0.97454 0.88007 1.77559 1.09133 1.01175 1.24958 1.48246 1.24608 1.23042 1.20935 1.19027 0.87252 0.91765 0.87571 1.41519 1.26516 1.22270 1.29195 0.70041 1.23427 0.96101 0.83791 0.86927 1.21912 1.00379 1.07612 1.05108 1.18223 0.86275 0.78259 0.82641 1.90880 1.53957 1.70700 1.26976 1.22333 1.00262 0.98445 0.96205 1.20422 0.95564 0.83519 0.94732 1.44385 1.64095 1.03740 1.19983 1.19525 1.21544 1.09957 0.87388 0.91174 1.25739 0.99469 1.00911 0.98597 1.70190 1.33566 1.37668 1.16729 0.85351 0.79003 0.78450 0.78154 1.21528 1.22722 1.19175 0.94295 0.90741 0.95530 0.88883 0.90766 0.74957 0.73916 0.72705 0.77849 0.92354 0.93389 0.93147 0.98881 0.94384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.03 71.98 0.65 -4.73 16 2 C 0.16 5.81 3.29 44.98 0.15 5.96 16 3 H 0.07 2.43 7.93 -2.39 -0.02 2.41 16 4 C -0.12 -3.24 5.02 30.67 0.15 -3.08 16 5 C 0.17 4.84 2.21 45.01 0.10 4.94 16 6 H 0.07 2.37 5.92 -2.38 -0.01 2.35 16 7 N -0.70 -15.27 5.07 -446.25 -2.26 -17.54 16 8 C 0.60 14.39 7.76 86.49 0.67 15.06 16 9 O -0.59 -17.38 15.47 -4.27 -0.07 -17.45 16 10 C -0.32 -6.52 6.15 -20.02 -0.12 -6.64 16 11 C 0.15 2.63 11.47 85.66 0.98 3.61 16 12 N -0.31 -7.94 12.54 -56.31 -0.71 -8.65 16 13 N -0.37 -9.03 3.79 -315.76 -1.20 -10.23 16 14 C 0.37 7.28 7.78 132.61 1.03 8.31 16 15 N -0.58 -6.43 5.39 -191.03 -1.03 -7.46 16 16 H 0.46 4.35 7.78 -92.71 -0.72 3.63 16 17 C 0.23 0.90 11.25 83.30 0.94 1.83 16 18 C -0.32 -3.67 9.95 22.26 0.22 -3.45 16 19 C 0.54 13.27 7.70 84.91 0.65 13.92 16 20 O -0.55 -18.29 17.90 -4.72 -0.08 -18.37 16 21 C -0.13 -4.81 5.65 30.67 0.17 -4.64 16 22 C 0.18 8.65 4.89 86.37 0.42 9.07 16 23 N -0.60 -28.04 2.70 -675.24 -1.82 -29.87 16 24 C -0.25 -13.30 9.58 84.03 0.81 -12.49 16 25 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 26 C -0.05 -2.83 4.91 84.86 0.42 -2.42 16 27 N -0.94 -54.72 11.19 21.65 0.24 -54.48 16 28 Si 0.96 44.10 29.59 68.60 2.03 46.13 16 29 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 30 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 31 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 32 H 0.04 1.43 5.73 -2.39 -0.01 1.42 16 33 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.41 6.05 7.54 -92.71 -0.70 5.35 16 38 H 0.24 1.97 7.48 -2.91 -0.02 1.95 16 39 H 0.26 -2.31 8.06 -2.91 -0.02 -2.34 16 40 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.05 2.74 6.04 -2.39 -0.01 2.73 16 44 H -0.01 -0.35 7.51 -2.39 -0.02 -0.37 16 45 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -85.37 368.69 1.99 -83.38 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -0.36 Total: 9.27 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 7.24 Total: 25.25 kcal Atomic # 7 Polarization: -121.44 SS G_CDS: -6.78 Total: -128.21 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -0.15 Total: -35.82 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -85.37 1.99 -83.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947787751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.691 kcal (2) G-P(sol) polarization free energy of solvation -85.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds