Wall clock time and date at job start Wed Apr 1 2020 05:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.69979 * 2 1 4 4 C 1.53189 * 109.58810 * 120.35488 * 2 1 3 5 5 C 1.53040 * 109.31179 * 65.15238 * 4 2 1 6 6 H 1.08998 * 109.46141 * 301.34351 * 5 4 2 7 7 N 1.46504 * 109.45870 * 181.38912 * 5 4 2 8 8 C 1.34771 * 119.99841 * 155.00142 * 7 5 4 9 9 O 1.21669 * 120.00397 * 359.97438 * 8 7 5 10 10 C 1.46907 * 119.99722 * 179.97438 * 8 7 5 11 11 C 1.36383 * 126.76771 * 359.68944 * 10 8 7 12 12 N 1.35448 * 109.77655 * 179.82197 * 11 10 8 13 13 H 0.97001 * 124.79688 * 180.15926 * 12 11 10 14 14 C 1.38055 * 110.41135 * 0.45592 * 12 11 10 15 15 C 1.39111 * 133.15373 * 179.70354 * 14 12 11 16 16 C 1.37749 * 119.96639 * 180.02562 * 15 14 12 17 17 C 1.38948 * 120.60957 * 0.02562 * 16 15 14 18 18 F 1.35094 * 119.87869 * 179.97438 * 17 16 15 19 19 C 1.37952 * 120.24585 * 359.97438 * 17 16 15 20 20 C 1.39289 * 119.64898 * 0.02562 * 19 17 16 21 21 C 1.53039 * 109.53675 * 61.36729 * 5 4 2 22 22 C 1.53184 * 109.31395 * 298.63232 * 21 5 4 23 23 N 1.46924 * 109.58745 * 239.64575 * 2 1 3 24 24 C 1.36941 * 120.63216 * 113.79951 * 23 2 1 25 25 H 1.07998 * 119.99812 * 27.69383 * 24 23 2 26 26 C 1.38808 * 119.99888 * 207.69068 * 24 23 2 27 27 N 1.31615 * 119.99919 * 17.36957 * 26 24 23 28 28 Si 1.86803 * 119.99890 * 197.36157 * 26 24 23 29 29 H 1.48503 * 109.47142 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.46750 * 120.00271 * 28 26 24 31 31 H 1.48496 * 109.47304 * 240.00264 * 28 26 24 32 32 H 1.08998 * 109.46812 * 180.35319 * 1 2 3 33 33 H 1.08994 * 109.47255 * 300.35582 * 1 2 3 34 34 H 1.08998 * 109.47366 * 60.35627 * 1 2 3 35 35 H 1.09003 * 109.50006 * 185.10499 * 4 2 1 36 36 H 1.09006 * 109.49872 * 305.17119 * 4 2 1 37 37 H 0.97000 * 120.00117 * 334.99648 * 7 5 4 38 38 H 1.08010 * 125.10667 * 359.97438 * 11 10 8 39 39 H 1.08002 * 120.01711 * 0.02562 * 15 14 12 40 40 H 1.08003 * 119.69922 * 180.02562 * 16 15 14 41 41 H 1.08003 * 120.17413 * 180.02562 * 19 17 16 42 42 H 1.09004 * 109.49619 * 178.68037 * 21 5 4 43 43 H 1.08995 * 109.49856 * 58.58842 * 21 5 4 44 44 H 1.09001 * 109.59004 * 294.84950 * 22 21 5 45 45 H 1.08997 * 109.59134 * 174.42154 * 22 21 5 46 46 H 0.97007 * 119.99487 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 1.6414 -2.2041 1.1701 6 1 0.5565 -2.2815 1.0993 7 7 2.1023 -2.8977 2.3754 8 6 1.4750 -4.0159 2.7908 9 8 0.5257 -4.4491 2.1651 10 6 1.9375 -4.7118 3.9991 11 6 2.9839 -4.3538 4.7972 12 7 3.1033 -5.2350 5.8190 13 1 3.7749 -5.1854 6.5171 14 6 2.1382 -6.2174 5.7227 15 6 1.8358 -7.3331 6.4967 16 6 0.7862 -8.1520 6.1427 17 6 0.0222 -7.8758 5.0155 18 9 -1.0035 -8.6892 4.6817 19 6 0.3072 -6.7739 4.2359 20 6 1.3661 -5.9387 4.5841 21 6 2.2801 -2.8463 -0.0635 22 6 1.7692 -2.1410 -1.3237 23 7 2.0225 -0.6995 -1.1945 24 6 2.7044 -0.0208 -2.1690 25 1 3.2695 0.8641 -1.9161 26 6 2.6693 -0.4703 -3.4818 27 7 1.7366 -1.3172 -3.8627 28 14 3.9458 0.1270 -4.7080 29 1 4.8776 1.0667 -4.0343 30 1 4.7083 -1.0338 -5.2336 31 1 3.2665 0.8224 -5.8305 32 1 -0.3633 -1.0276 0.0063 33 1 -0.3633 0.5193 0.8867 34 1 -0.3634 0.5083 -0.8931 35 1 3.1297 -0.6503 1.2913 36 1 1.6079 -0.2781 2.1369 37 1 2.8589 -2.5522 2.8745 38 1 3.6200 -3.4953 4.6396 39 1 2.4236 -7.5571 7.3746 40 1 0.5550 -9.0169 6.7469 41 1 -0.2877 -6.5600 3.3602 42 1 2.0124 -3.9022 -0.1037 43 1 3.3640 -2.7474 -0.0052 44 1 0.6987 -2.3156 -1.4317 45 1 2.2945 -2.5274 -2.1971 46 1 1.7119 -1.6309 -4.7803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948091029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:44 Heat of formation + Delta-G solvation = -5.071754 kcal Electronic energy + Delta-G solvation = -29770.280351 eV Core-core repulsion = 25575.064817 eV Total energy + Delta-G solvation = -4195.215534 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -48.92139 -41.74588 -39.38683 -37.57417 -37.00650 -34.39734 -32.63307 -32.29309 -30.84907 -29.90272 -29.39894 -28.82838 -26.85077 -24.47269 -23.49954 -23.28310 -22.21946 -21.87675 -21.25987 -19.78687 -18.80143 -18.14785 -17.56747 -16.86357 -16.59208 -16.15317 -15.76245 -15.70321 -15.44493 -15.01666 -14.67157 -14.23728 -14.16583 -13.82485 -13.70681 -13.58522 -13.40830 -13.09859 -12.99963 -12.83905 -12.54342 -12.43090 -12.18300 -11.66466 -11.38188 -11.26206 -11.04795 -10.89094 -10.77773 -10.58585 -10.31770 -10.15502 -10.07021 -9.99944 -9.69887 -9.68388 -9.30557 -8.68520 -8.56223 -8.38724 -8.07642 -6.66421 -5.76140 -3.18456 0.58247 1.06076 1.76993 2.57270 3.26136 3.37520 3.42766 3.46155 3.47953 3.69155 4.02288 4.27531 4.42043 4.50360 4.63528 4.74772 4.98851 5.06969 5.25982 5.34761 5.39645 5.41800 5.51131 5.65204 5.67117 5.82919 5.88069 5.95961 6.06328 6.10596 6.19804 6.25969 6.29197 6.36474 6.48063 6.51608 6.61575 6.70011 6.72093 6.84941 6.92303 6.96292 7.01598 7.19582 7.43292 7.72993 7.81597 7.82578 8.47744 8.52940 9.23769 9.87491 10.44148 11.31997 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.002287 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.335153 B =12240.351416 C =12607.771520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.170 3.830 3 H 0.065 0.935 4 C -0.132 4.132 5 C 0.151 3.849 6 H 0.086 0.914 7 N -0.723 5.723 8 C 0.583 3.417 9 O -0.539 6.539 10 C -0.218 4.218 11 C 0.111 3.889 12 N -0.577 5.577 13 H 0.421 0.579 14 C 0.074 3.926 15 C -0.097 4.097 16 C -0.133 4.133 17 C 0.075 3.925 18 F -0.140 7.140 19 C -0.095 4.095 20 C -0.039 4.039 21 C -0.147 4.147 22 C 0.174 3.826 23 N -0.585 5.585 24 C -0.252 4.252 25 H 0.066 0.934 26 C 0.003 3.997 27 N -0.899 5.899 28 Si 0.900 3.100 29 H -0.278 1.278 30 H -0.290 1.290 31 H -0.291 1.291 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.390 0.610 38 H 0.182 0.818 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.089 0.911 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -8.772 24.441 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.172 4.172 5 C 0.048 3.952 6 H 0.104 0.896 7 N -0.372 5.372 8 C 0.370 3.630 9 O -0.416 6.416 10 C -0.228 4.228 11 C -0.021 4.021 12 N -0.179 5.179 13 H 0.259 0.741 14 C -0.031 4.031 15 C -0.118 4.118 16 C -0.153 4.153 17 C 0.055 3.945 18 F -0.119 7.119 19 C -0.115 4.115 20 C -0.043 4.043 21 C -0.187 4.187 22 C 0.047 3.953 23 N -0.307 5.307 24 C -0.381 4.381 25 H 0.083 0.917 26 C -0.196 4.196 27 N -0.543 5.543 28 Si 0.730 3.270 29 H -0.203 1.203 30 H -0.216 1.216 31 H -0.218 1.218 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.223 0.777 38 H 0.199 0.801 39 H 0.150 0.850 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.107 0.893 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.167 -9.152 23.858 25.748 hybrid contribution 1.199 0.300 -0.183 1.249 sum 4.366 -8.852 23.674 25.649 Atomic orbital electron populations 1.22305 0.98693 1.01179 1.00050 1.20433 0.91795 0.95046 0.86551 0.91713 1.22296 1.01039 0.94266 0.99576 1.21092 0.99915 0.91127 0.83039 0.89577 1.46149 1.34640 1.27130 1.29329 1.17170 0.82635 0.80214 0.82955 1.90794 1.28086 1.65824 1.56931 1.20201 1.01805 1.00058 1.00778 1.22162 0.97686 0.94497 0.87789 1.41482 1.28858 1.22378 1.25152 0.74097 1.18240 0.93100 0.93341 0.98437 1.19796 0.98890 0.93098 0.99992 1.20768 0.96179 1.01236 0.97082 1.17379 0.88894 0.91483 0.96739 1.91496 1.56661 1.71421 1.92288 1.20657 0.97528 0.92734 1.00535 1.18444 0.96083 0.95179 0.94638 1.22563 1.00045 0.99262 0.96820 1.20747 0.97766 0.82833 0.93925 1.44184 1.63797 1.03487 1.19212 1.19190 1.21997 1.10194 0.86765 0.91656 1.25044 0.97730 1.00037 0.96795 1.70049 1.31724 1.35726 1.16817 0.86264 0.81375 0.78012 0.81342 1.20324 1.21636 1.21792 0.93127 0.94522 0.92634 0.91974 0.92629 0.77716 0.80067 0.85023 0.84308 0.83395 0.92843 0.92779 0.96052 0.89334 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.03 37.16 0.34 -2.79 16 2 C 0.17 3.38 3.29 -67.60 -0.22 3.16 16 3 H 0.06 1.28 7.93 -51.93 -0.41 0.87 16 4 C -0.13 -2.12 5.02 -26.61 -0.13 -2.26 16 5 C 0.15 2.59 2.21 -67.89 -0.15 2.44 16 6 H 0.09 1.68 5.92 -51.93 -0.31 1.37 16 7 N -0.72 -9.88 5.07 -55.00 -0.28 -10.16 16 8 C 0.58 8.99 7.76 -12.75 -0.10 8.89 16 9 O -0.54 -10.62 15.82 5.22 0.08 -10.53 16 10 C -0.22 -2.64 6.27 -103.31 -0.65 -3.29 16 11 C 0.11 0.83 11.33 -16.62 -0.19 0.64 16 12 N -0.58 -3.57 5.99 -10.47 -0.06 -3.64 16 13 H 0.42 1.00 8.96 -40.82 -0.37 0.64 16 14 C 0.07 0.68 7.26 -83.94 -0.61 0.07 16 15 C -0.10 -0.73 10.06 -39.44 -0.40 -1.13 16 16 C -0.13 -1.16 9.99 -39.50 -0.39 -1.55 16 17 C 0.08 0.88 7.29 -39.42 -0.29 0.59 16 18 F -0.14 -1.75 17.26 2.25 0.04 -1.71 16 19 C -0.10 -1.27 9.83 -39.30 -0.39 -1.65 16 20 C -0.04 -0.48 6.26 -104.95 -0.66 -1.14 16 21 C -0.15 -2.91 5.65 -26.62 -0.15 -3.06 16 22 C 0.17 4.17 4.90 -3.71 -0.02 4.15 16 23 N -0.59 -14.15 2.70 -164.78 -0.45 -14.60 16 24 C -0.25 -6.74 9.59 -15.06 -0.14 -6.88 16 25 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 26 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 27 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 28 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 32 H 0.05 1.01 5.72 -51.93 -0.30 0.72 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.39 3.87 7.48 -40.82 -0.31 3.57 16 38 H 0.18 0.65 7.38 -52.48 -0.39 0.26 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 41 H 0.15 2.20 7.45 -52.48 -0.39 1.81 16 42 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.55 7.50 -51.93 -0.39 0.16 16 45 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 46 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 375.12 15.07 5.65 5.65 Total: -1.00 -34.06 375.12 -9.76 -43.82 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -6.10 Total: 3.95 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -4.24 Total: -3.83 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.17 Total: -53.83 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.06 -9.76 -43.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948091029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.747 kcal (2) G-P(sol) polarization free energy of solvation -34.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds