Wall clock time and date at job start Wed Apr 1 2020 05:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.69979 * 2 1 4 4 C 1.53189 * 109.58810 * 120.35488 * 2 1 3 5 5 C 1.53040 * 109.31179 * 65.15238 * 4 2 1 6 6 H 1.08998 * 109.46141 * 301.34351 * 5 4 2 7 7 N 1.46504 * 109.45870 * 181.38912 * 5 4 2 8 8 C 1.34771 * 119.99841 * 155.00142 * 7 5 4 9 9 O 1.21669 * 120.00397 * 359.97438 * 8 7 5 10 10 C 1.46907 * 119.99722 * 179.97438 * 8 7 5 11 11 C 1.36383 * 126.76771 * 359.68944 * 10 8 7 12 12 N 1.35448 * 109.77655 * 179.82197 * 11 10 8 13 13 H 0.97001 * 124.79688 * 180.15926 * 12 11 10 14 14 C 1.38055 * 110.41135 * 0.45592 * 12 11 10 15 15 C 1.39111 * 133.15373 * 179.70354 * 14 12 11 16 16 C 1.37749 * 119.96639 * 180.02562 * 15 14 12 17 17 C 1.38948 * 120.60957 * 0.02562 * 16 15 14 18 18 F 1.35094 * 119.87869 * 179.97438 * 17 16 15 19 19 C 1.37952 * 120.24585 * 359.97438 * 17 16 15 20 20 C 1.39289 * 119.64898 * 0.02562 * 19 17 16 21 21 C 1.53039 * 109.53675 * 61.36729 * 5 4 2 22 22 C 1.53184 * 109.31395 * 298.63232 * 21 5 4 23 23 N 1.46924 * 109.58745 * 239.64575 * 2 1 3 24 24 C 1.36941 * 120.63216 * 113.79951 * 23 2 1 25 25 H 1.07998 * 119.99812 * 27.69383 * 24 23 2 26 26 C 1.38808 * 119.99888 * 207.69068 * 24 23 2 27 27 N 1.31615 * 119.99919 * 17.36957 * 26 24 23 28 28 Si 1.86803 * 119.99890 * 197.36157 * 26 24 23 29 29 H 1.48503 * 109.47142 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.46750 * 120.00271 * 28 26 24 31 31 H 1.48496 * 109.47304 * 240.00264 * 28 26 24 32 32 H 1.08998 * 109.46812 * 180.35319 * 1 2 3 33 33 H 1.08994 * 109.47255 * 300.35582 * 1 2 3 34 34 H 1.08998 * 109.47366 * 60.35627 * 1 2 3 35 35 H 1.09003 * 109.50006 * 185.10499 * 4 2 1 36 36 H 1.09006 * 109.49872 * 305.17119 * 4 2 1 37 37 H 0.97000 * 120.00117 * 334.99648 * 7 5 4 38 38 H 1.08010 * 125.10667 * 359.97438 * 11 10 8 39 39 H 1.08002 * 120.01711 * 0.02562 * 15 14 12 40 40 H 1.08003 * 119.69922 * 180.02562 * 16 15 14 41 41 H 1.08003 * 120.17413 * 180.02562 * 19 17 16 42 42 H 1.09004 * 109.49619 * 178.68037 * 21 5 4 43 43 H 1.08995 * 109.49856 * 58.58842 * 21 5 4 44 44 H 1.09001 * 109.59004 * 294.84950 * 22 21 5 45 45 H 1.08997 * 109.59134 * 174.42154 * 22 21 5 46 46 H 0.97007 * 119.99487 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 1.6414 -2.2041 1.1701 6 1 0.5565 -2.2815 1.0993 7 7 2.1023 -2.8977 2.3754 8 6 1.4750 -4.0159 2.7908 9 8 0.5257 -4.4491 2.1651 10 6 1.9375 -4.7118 3.9991 11 6 2.9839 -4.3538 4.7972 12 7 3.1033 -5.2350 5.8190 13 1 3.7749 -5.1854 6.5171 14 6 2.1382 -6.2174 5.7227 15 6 1.8358 -7.3331 6.4967 16 6 0.7862 -8.1520 6.1427 17 6 0.0222 -7.8758 5.0155 18 9 -1.0035 -8.6892 4.6817 19 6 0.3072 -6.7739 4.2359 20 6 1.3661 -5.9387 4.5841 21 6 2.2801 -2.8463 -0.0635 22 6 1.7692 -2.1410 -1.3237 23 7 2.0225 -0.6995 -1.1945 24 6 2.7044 -0.0208 -2.1690 25 1 3.2695 0.8641 -1.9161 26 6 2.6693 -0.4703 -3.4818 27 7 1.7366 -1.3172 -3.8627 28 14 3.9458 0.1270 -4.7080 29 1 4.8776 1.0667 -4.0343 30 1 4.7083 -1.0338 -5.2336 31 1 3.2665 0.8224 -5.8305 32 1 -0.3633 -1.0276 0.0063 33 1 -0.3633 0.5193 0.8867 34 1 -0.3634 0.5083 -0.8931 35 1 3.1297 -0.6503 1.2913 36 1 1.6079 -0.2781 2.1369 37 1 2.8589 -2.5522 2.8745 38 1 3.6200 -3.4953 4.6396 39 1 2.4236 -7.5571 7.3746 40 1 0.5550 -9.0169 6.7469 41 1 -0.2877 -6.5600 3.3602 42 1 2.0124 -3.9022 -0.1037 43 1 3.3640 -2.7474 -0.0052 44 1 0.6987 -2.3156 -1.4317 45 1 2.2945 -2.5274 -2.1971 46 1 1.7119 -1.6309 -4.7803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948091029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:42 Heat of formation + Delta-G solvation = -27.928064 kcal Electronic energy + Delta-G solvation = -29771.271475 eV Core-core repulsion = 25575.064817 eV Total energy + Delta-G solvation = -4196.206658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.85598 -42.47166 -40.69658 -39.10544 -37.73467 -35.94026 -34.30158 -33.22637 -32.42935 -31.46197 -30.17267 -29.90465 -28.42253 -26.22354 -24.62695 -24.16667 -23.62287 -22.97845 -22.63796 -20.94899 -19.96259 -19.37225 -18.66525 -18.31992 -17.51961 -17.20363 -17.11377 -16.64639 -16.47796 -16.21171 -16.02771 -15.59293 -15.48858 -15.17948 -15.02178 -14.84991 -14.49645 -14.21884 -14.19245 -14.06167 -13.84751 -13.73529 -13.64944 -13.14414 -12.89628 -12.65398 -12.53833 -12.39503 -12.25556 -12.05286 -12.01254 -11.95458 -11.73296 -11.45779 -11.13356 -10.87041 -10.81602 -10.54587 -9.94956 -9.29233 -8.85389 -8.67059 -7.83608 -5.28607 -0.15806 0.28892 0.95352 1.47565 1.49440 1.59841 1.99186 2.29793 2.38144 2.53441 2.74919 3.24968 3.32158 3.60652 3.64129 3.79577 3.85170 3.92808 4.07471 4.14572 4.31061 4.33770 4.41099 4.48495 4.55154 4.59380 4.65107 4.73598 4.79877 4.87050 4.94566 5.00108 5.13505 5.15364 5.19327 5.19997 5.20709 5.36443 5.41935 5.45271 5.47512 5.54180 5.65855 5.70750 5.78178 5.95085 6.42793 6.53346 6.76695 7.17432 7.44002 7.89966 8.42507 9.23174 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019315 B = 0.002287 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.335153 B =12240.351416 C =12607.771520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.073 0.927 4 C -0.115 4.115 5 C 0.163 3.837 6 H 0.057 0.943 7 N -0.705 5.705 8 C 0.580 3.420 9 O -0.599 6.599 10 C -0.276 4.276 11 C 0.165 3.835 12 N -0.550 5.550 13 H 0.447 0.553 14 C 0.072 3.928 15 C -0.072 4.072 16 C -0.137 4.137 17 C 0.063 3.937 18 F -0.153 7.153 19 C -0.138 4.138 20 C -0.067 4.067 21 C -0.131 4.131 22 C 0.185 3.815 23 N -0.599 5.599 24 C -0.253 4.253 25 H 0.075 0.925 26 C -0.056 4.056 27 N -0.939 5.939 28 Si 0.966 3.034 29 H -0.260 1.260 30 H -0.295 1.295 31 H -0.297 1.297 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.027 0.973 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.414 0.586 38 H 0.233 0.767 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.108 0.892 42 H 0.036 0.964 43 H 0.064 0.936 44 H -0.014 1.014 45 H 0.052 0.948 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.649 -7.611 29.347 31.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.091 0.909 4 C -0.155 4.155 5 C 0.059 3.941 6 H 0.075 0.925 7 N -0.356 5.356 8 C 0.370 3.630 9 O -0.481 6.481 10 C -0.286 4.286 11 C 0.029 3.971 12 N -0.153 5.153 13 H 0.290 0.710 14 C -0.034 4.034 15 C -0.091 4.091 16 C -0.156 4.156 17 C 0.043 3.957 18 F -0.132 7.132 19 C -0.157 4.157 20 C -0.071 4.071 21 C -0.171 4.171 22 C 0.059 3.941 23 N -0.321 5.321 24 C -0.383 4.383 25 H 0.093 0.907 26 C -0.251 4.251 27 N -0.585 5.585 28 Si 0.794 3.206 29 H -0.184 1.184 30 H -0.222 1.222 31 H -0.224 1.224 32 H 0.049 0.951 33 H 0.094 0.906 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.251 0.749 38 H 0.249 0.751 39 H 0.198 0.802 40 H 0.186 0.814 41 H 0.126 0.874 42 H 0.055 0.945 43 H 0.083 0.917 44 H 0.004 0.996 45 H 0.070 0.930 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.044 -7.968 28.867 30.764 hybrid contribution 0.005 -0.066 -1.606 1.607 sum 7.048 -8.034 27.261 29.281 Atomic orbital electron populations 1.22202 0.98564 1.00104 1.00509 1.20735 0.91941 0.95665 0.86414 0.90856 1.22121 1.02164 0.92422 0.98751 1.20670 0.98038 0.92227 0.83211 0.92521 1.45744 1.35205 1.26553 1.28116 1.17720 0.81702 0.80013 0.83519 1.90770 1.30907 1.67400 1.59066 1.19937 1.05401 1.01597 1.01708 1.22759 0.94913 0.94122 0.85323 1.41492 1.28082 1.20685 1.25034 0.71032 1.18360 0.93227 0.94399 0.97422 1.20309 0.97629 0.91048 1.00160 1.21101 0.95986 1.02522 0.96005 1.17715 0.89158 0.90981 0.97824 1.91451 1.57463 1.71686 1.92603 1.20516 0.99290 0.95145 1.00788 1.18728 0.96455 0.95568 0.96393 1.22311 1.00458 0.97938 0.96421 1.20392 0.95180 0.83861 0.94701 1.44397 1.64105 1.03477 1.20128 1.19594 1.21487 1.09963 0.87284 0.90705 1.25836 0.99616 1.00869 0.98803 1.70231 1.33829 1.37740 1.16711 0.85229 0.79097 0.77394 0.78861 1.18405 1.22202 1.22420 0.95052 0.90639 0.95410 0.90203 0.88847 0.74880 0.75114 0.80247 0.81433 0.87379 0.94498 0.91733 0.99640 0.92999 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 9.03 71.98 0.65 -5.31 16 2 C 0.16 6.16 3.29 44.97 0.15 6.31 16 3 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 4 C -0.12 -3.37 5.02 30.67 0.15 -3.22 16 5 C 0.16 5.53 2.21 45.02 0.10 5.63 16 6 H 0.06 2.31 5.92 -2.39 -0.01 2.29 16 7 N -0.71 -18.09 5.07 -446.16 -2.26 -20.35 16 8 C 0.58 18.19 7.76 86.51 0.67 18.86 16 9 O -0.60 -25.79 15.82 -4.25 -0.07 -25.86 16 10 C -0.28 -6.37 6.27 -19.01 -0.12 -6.49 16 11 C 0.16 1.64 11.33 83.70 0.95 2.59 16 12 N -0.55 -3.76 5.99 -187.04 -1.12 -4.88 16 13 H 0.45 -1.03 8.96 -92.71 -0.83 -1.86 16 14 C 0.07 1.07 7.26 38.89 0.28 1.35 16 15 C -0.07 -0.78 10.06 22.36 0.23 -0.55 16 16 C -0.14 -2.09 9.99 22.32 0.22 -1.86 16 17 C 0.06 1.54 7.29 22.37 0.16 1.71 16 18 F -0.15 -4.15 17.26 44.97 0.78 -3.37 16 19 C -0.14 -4.06 9.83 22.45 0.22 -3.84 16 20 C -0.07 -1.67 6.26 -20.08 -0.13 -1.80 16 21 C -0.13 -5.37 5.65 30.67 0.17 -5.20 16 22 C 0.19 9.46 4.90 86.36 0.42 9.88 16 23 N -0.60 -29.49 2.70 -675.25 -1.82 -31.31 16 24 C -0.25 -13.63 9.59 84.03 0.81 -12.83 16 25 H 0.08 3.84 7.89 -2.91 -0.02 3.81 16 26 C -0.06 -3.17 4.91 84.86 0.42 -2.76 16 27 N -0.94 -57.30 11.19 21.65 0.24 -57.06 16 28 Si 0.97 45.10 29.59 68.60 2.03 47.13 16 29 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 30 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 31 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 32 H 0.03 1.31 5.72 -2.39 -0.01 1.29 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 37 H 0.41 6.42 7.48 -92.71 -0.69 5.73 16 38 H 0.23 -0.10 7.38 -2.91 -0.02 -0.12 16 39 H 0.18 0.27 8.06 -2.91 -0.02 0.25 16 40 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.11 3.89 7.45 -2.91 -0.02 3.87 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H -0.01 -0.82 7.50 -2.39 -0.02 -0.84 16 45 H 0.05 3.01 6.04 -2.39 -0.01 2.99 16 46 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 Total: -1.00 -85.71 375.12 2.65 -83.06 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -0.48 Total: 10.17 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 5.36 Total: 2.47 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.96 Total: -113.60 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.07 Total: -25.86 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.78 Total: -3.37 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -85.71 2.65 -83.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948091029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.131 kcal (2) G-P(sol) polarization free energy of solvation -85.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds