Wall clock time and date at job start Wed Apr 1 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.70112 * 2 1 4 4 C 1.53187 * 109.58768 * 239.63923 * 2 1 3 5 5 C 1.53043 * 109.31188 * 294.85208 * 4 2 1 6 6 H 1.08993 * 109.46241 * 58.64157 * 5 4 2 7 7 N 1.46501 * 109.45839 * 178.61136 * 5 4 2 8 8 C 1.34780 * 120.00150 * 204.99591 * 7 5 4 9 9 O 1.21666 * 119.99610 * 0.02562 * 8 7 5 10 10 C 1.46901 * 119.99795 * 180.02562 * 8 7 5 11 11 C 1.36384 * 126.76853 * 0.02643 * 10 8 7 12 12 N 1.35442 * 109.77335 * 179.97438 * 11 10 8 13 13 H 0.97004 * 124.79185 * 180.02562 * 12 11 10 14 14 C 1.38055 * 110.42022 * 359.97438 * 12 11 10 15 15 C 1.39104 * 133.15672 * 180.02562 * 14 12 11 16 16 C 1.37756 * 119.96466 * 179.97438 * 15 14 12 17 17 C 1.38949 * 120.60786 * 0.02562 * 16 15 14 18 18 F 1.35098 * 119.87928 * 179.97438 * 17 16 15 19 19 C 1.37955 * 120.24645 * 359.97438 * 17 16 15 20 20 C 1.39290 * 119.65100 * 359.73377 * 19 17 16 21 21 C 1.53038 * 109.53681 * 298.63071 * 5 4 2 22 22 C 1.52765 * 109.38187 * 61.24188 * 21 5 4 23 23 N 1.46918 * 109.00689 * 305.58604 * 22 21 5 24 24 C 1.36940 * 120.63193 * 233.58122 * 23 22 21 25 25 H 1.08005 * 119.99910 * 151.68252 * 24 23 22 26 26 C 1.38811 * 119.99865 * 331.68246 * 24 23 22 27 27 N 1.31624 * 119.99873 * 143.87116 * 26 24 23 28 28 Si 1.86802 * 119.99921 * 323.87009 * 26 24 23 29 29 H 1.48505 * 109.47069 * 274.50577 * 28 26 24 30 30 H 1.48494 * 109.47224 * 34.50706 * 28 26 24 31 31 H 1.48500 * 109.47100 * 154.50884 * 28 26 24 32 32 H 1.09000 * 109.47011 * 299.64957 * 1 2 3 33 33 H 1.09003 * 109.46869 * 59.64573 * 1 2 3 34 34 H 1.08999 * 109.47118 * 179.64840 * 1 2 3 35 35 H 1.09005 * 109.49789 * 54.79901 * 4 2 1 36 36 H 1.09003 * 109.49960 * 174.89675 * 4 2 1 37 37 H 0.97010 * 120.00027 * 25.00134 * 7 5 4 38 38 H 1.07997 * 125.10863 * 359.97438 * 11 10 8 39 39 H 1.07995 * 120.02194 * 359.97438 * 15 14 12 40 40 H 1.07997 * 119.69739 * 179.97438 * 16 15 14 41 41 H 1.08005 * 120.17170 * 179.97438 * 19 17 16 42 42 H 1.09004 * 109.49917 * 181.31798 * 21 5 4 43 43 H 1.09008 * 109.50015 * 301.41615 * 21 5 4 44 44 H 1.09004 * 109.50731 * 185.70517 * 22 21 5 45 45 H 1.08995 * 109.42853 * 65.42771 * 22 21 5 46 46 H 0.96996 * 119.99472 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 -1.2453 5 6 1.6414 -2.2042 -1.1699 6 1 0.5565 -2.2815 -1.0989 7 7 2.1022 -2.8979 -2.3751 8 6 1.4749 -4.0162 -2.7905 9 8 0.5256 -4.4492 -2.1647 10 6 1.9375 -4.7121 -3.9987 11 6 2.9805 -4.3513 -4.7998 12 7 3.1039 -5.2361 -5.8178 13 1 3.7759 -5.1868 -6.5157 14 6 2.1390 -6.2187 -5.7215 15 6 1.8369 -7.3347 -6.4951 16 6 0.7874 -8.1537 -6.1410 17 6 0.0225 -7.8765 -5.0146 18 9 -1.0037 -8.6894 -4.6812 19 6 0.3072 -6.7743 -4.2353 20 6 1.3699 -5.9424 -4.5802 21 6 2.2799 -2.8464 0.0637 22 6 1.7740 -2.1420 1.3213 23 7 2.0225 -0.6995 1.1946 24 6 2.7052 -0.0209 2.1686 25 1 3.2754 0.8604 1.9142 26 6 2.6643 -0.4657 3.4829 27 7 3.7315 -0.3620 4.2462 28 14 1.0947 -1.2115 4.1681 29 1 0.2093 -0.1289 4.6678 30 1 0.3968 -1.9668 3.0969 31 1 1.4300 -2.1315 5.2845 32 1 -0.3633 0.5084 0.8931 33 1 -0.3633 0.5193 -0.8868 34 1 -0.3633 -1.0276 -0.0063 35 1 1.6075 -0.2786 -2.1368 36 1 3.1298 -0.6504 -1.2912 37 1 2.8590 -2.5525 -2.8742 38 1 3.6130 -3.4895 -4.6456 39 1 2.4249 -7.5589 -7.3728 40 1 0.5564 -9.0187 -6.7449 41 1 -0.2884 -6.5597 -3.3602 42 1 2.0122 -3.9023 0.1040 43 1 3.3640 -2.7475 0.0055 44 1 2.3024 -2.5287 2.1927 45 1 0.7043 -2.3203 1.4312 46 1 3.7030 -0.6732 5.1645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948091030.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:47 Heat of formation + Delta-G solvation = -21.063993 kcal Electronic energy + Delta-G solvation = -29859.837278 eV Core-core repulsion = 25663.928268 eV Total energy + Delta-G solvation = -4195.909010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.85618 -42.47501 -40.76673 -39.23366 -37.73652 -35.97035 -34.35535 -33.24497 -32.77894 -31.87356 -30.18709 -29.95857 -28.45406 -26.09147 -24.58476 -24.16940 -24.10576 -22.98358 -22.64124 -20.96575 -20.01938 -19.36750 -18.73645 -18.35131 -17.56358 -17.38391 -17.12869 -16.64784 -16.54597 -16.21217 -16.06524 -15.92714 -15.29355 -15.18742 -15.10398 -14.82477 -14.70501 -14.37599 -14.29488 -14.14463 -13.90329 -13.83844 -13.72198 -13.64714 -12.99118 -12.72236 -12.55498 -12.40290 -12.38426 -12.12545 -12.05566 -11.97449 -11.63711 -11.36713 -11.14516 -10.87550 -10.85664 -10.47799 -9.98408 -9.29505 -8.92036 -8.85492 -8.22119 -5.36455 -0.16018 0.28650 0.94984 1.35565 1.44367 1.51296 1.98992 2.27967 2.37665 2.47579 2.74593 2.94927 3.24639 3.40713 3.60459 3.77193 3.84175 3.90213 4.04437 4.07248 4.28645 4.31015 4.35800 4.40792 4.48472 4.58396 4.63551 4.65408 4.69540 4.83555 4.86564 4.97468 5.01852 5.10848 5.13625 5.16293 5.18009 5.19747 5.29543 5.33435 5.42277 5.45339 5.61060 5.64141 5.92051 5.94849 6.16765 6.52344 6.75008 6.97467 7.41995 7.69250 8.13923 8.96118 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018298 B = 0.002459 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.834224 B =11385.782198 C =12028.106626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.161 3.839 3 H 0.075 0.925 4 C -0.118 4.118 5 C 0.162 3.838 6 H 0.067 0.933 7 N -0.706 5.706 8 C 0.582 3.418 9 O -0.597 6.597 10 C -0.276 4.276 11 C 0.164 3.836 12 N -0.551 5.551 13 H 0.446 0.554 14 C 0.071 3.929 15 C -0.073 4.073 16 C -0.137 4.137 17 C 0.063 3.937 18 F -0.153 7.153 19 C -0.136 4.136 20 C -0.066 4.066 21 C -0.132 4.132 22 C 0.147 3.853 23 N -0.603 5.603 24 C -0.250 4.250 25 H 0.059 0.941 26 C -0.009 4.009 27 N -0.929 5.929 28 Si 0.880 3.120 29 H -0.298 1.298 30 H -0.238 1.238 31 H -0.305 1.305 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.232 0.768 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.022 0.978 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.448 -10.651 -31.067 32.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.093 0.907 4 C -0.157 4.157 5 C 0.057 3.943 6 H 0.085 0.915 7 N -0.357 5.357 8 C 0.373 3.627 9 O -0.479 6.479 10 C -0.286 4.286 11 C 0.028 3.972 12 N -0.154 5.154 13 H 0.289 0.711 14 C -0.035 4.035 15 C -0.092 4.092 16 C -0.157 4.157 17 C 0.043 3.957 18 F -0.132 7.132 19 C -0.156 4.156 20 C -0.071 4.071 21 C -0.173 4.173 22 C 0.021 3.979 23 N -0.326 5.326 24 C -0.379 4.379 25 H 0.076 0.924 26 C -0.207 4.207 27 N -0.573 5.573 28 Si 0.708 3.292 29 H -0.226 1.226 30 H -0.162 1.162 31 H -0.233 1.233 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.251 0.749 38 H 0.248 0.752 39 H 0.196 0.804 40 H 0.185 0.815 41 H 0.129 0.871 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.040 0.960 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.929 -10.986 -30.591 32.517 hybrid contribution -0.728 -0.304 1.535 1.726 sum 0.202 -11.290 -29.056 31.173 Atomic orbital electron populations 1.22269 0.97517 1.00860 1.01451 1.20772 0.92464 0.95777 0.85534 0.90731 1.22124 1.02143 0.92605 0.98820 1.20699 0.98493 0.91985 0.83144 0.91509 1.45740 1.35259 1.26583 1.28121 1.17657 0.81672 0.79942 0.83448 1.90761 1.30755 1.67360 1.58984 1.19938 1.05536 1.01377 1.01777 1.22764 0.94949 0.94091 0.85422 1.41509 1.28051 1.20559 1.25257 0.71097 1.18367 0.93284 0.94416 0.97417 1.20301 0.97663 0.91095 1.00188 1.21098 0.96002 1.02491 0.96080 1.17715 0.89127 0.91023 0.97852 1.91453 1.57418 1.71723 1.92599 1.20511 0.99143 0.95090 1.00823 1.18722 0.96430 0.95614 0.96297 1.22201 1.00841 0.98411 0.95800 1.21126 0.96800 0.84014 0.95961 1.44556 1.64677 1.02880 1.20472 1.18734 1.21067 1.11126 0.86979 0.92378 1.25667 0.98465 0.99684 0.96858 1.70165 1.27802 1.50290 1.09023 0.86932 0.85174 0.78063 0.79024 1.22577 1.16213 1.23264 0.94543 0.90127 0.94109 0.88444 0.90615 0.74897 0.75220 0.80390 0.81526 0.87142 0.93340 0.91693 0.94201 0.95974 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.34 9.03 71.98 0.65 -4.69 16 2 C 0.16 5.67 3.29 44.97 0.15 5.82 16 3 H 0.07 2.64 7.93 -2.39 -0.02 2.62 16 4 C -0.12 -3.15 5.02 30.67 0.15 -2.99 16 5 C 0.16 4.88 2.21 45.02 0.10 4.98 16 6 H 0.07 2.35 5.92 -2.39 -0.01 2.34 16 7 N -0.71 -16.32 5.07 -446.17 -2.26 -18.58 16 8 C 0.58 16.73 7.76 86.51 0.67 17.40 16 9 O -0.60 -23.59 15.82 -4.24 -0.07 -23.66 16 10 C -0.28 -5.90 6.27 -19.02 -0.12 -6.02 16 11 C 0.16 1.46 11.33 83.70 0.95 2.41 16 12 N -0.55 -3.39 5.99 -187.05 -1.12 -4.51 16 13 H 0.45 -1.21 8.96 -92.70 -0.83 -2.05 16 14 C 0.07 1.00 7.26 38.89 0.28 1.28 16 15 C -0.07 -0.74 10.07 22.36 0.23 -0.51 16 16 C -0.14 -1.98 9.99 22.33 0.22 -1.76 16 17 C 0.06 1.46 7.29 22.37 0.16 1.62 16 18 F -0.15 -3.96 17.26 44.97 0.78 -3.18 16 19 C -0.14 -3.78 9.83 22.46 0.22 -3.56 16 20 C -0.07 -1.55 6.27 -20.08 -0.13 -1.68 16 21 C -0.13 -4.87 5.63 30.53 0.17 -4.70 16 22 C 0.15 6.55 3.90 86.22 0.34 6.89 16 23 N -0.60 -27.42 2.42 -676.05 -1.63 -29.06 16 24 C -0.25 -13.71 9.84 84.03 0.83 -12.88 16 25 H 0.06 3.40 8.06 -2.91 -0.02 3.38 16 26 C -0.01 -0.53 4.81 84.86 0.41 -0.12 16 27 N -0.93 -57.65 13.97 21.65 0.30 -57.34 16 28 Si 0.88 45.60 26.72 68.60 1.83 47.43 16 29 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 30 H -0.24 -11.67 4.66 99.48 0.46 -11.20 16 31 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.04 1.42 5.74 -2.39 -0.01 1.40 16 35 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.41 5.72 7.48 -92.70 -0.69 5.03 16 38 H 0.23 -0.27 7.38 -2.91 -0.02 -0.29 16 39 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 40 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.11 3.73 7.45 -2.91 -0.02 3.71 16 42 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 43 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 44 H 0.04 1.97 5.86 -2.38 -0.01 1.96 16 45 H 0.02 1.03 6.00 -2.39 -0.01 1.02 16 46 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -84.50 369.96 2.39 -82.11 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -0.72 Total: 5.32 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 5.28 Total: 1.48 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.71 Total: -109.49 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.07 Total: -23.66 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.78 Total: -3.18 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.83 Total: 47.43 kcal Total: -84.50 2.39 -82.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948091030.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.042 kcal (2) G-P(sol) polarization free energy of solvation -84.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds