Wall clock time and date at job start Wed Apr 1 2020 05:06:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09001 * 109.45454 * 2 1
4 4 C 1.53115 * 109.50078 * 240.01993 * 2 1 3
5 5 C 1.53197 * 109.32809 * 178.63374 * 4 2 1
6 6 N 1.46919 * 108.77961 * 54.63329 * 5 4 2
7 7 C 1.36933 * 120.63302 * 126.40935 * 6 5 4
8 8 H 1.08002 * 119.99949 * 331.82053 * 7 6 5
9 9 C 1.38814 * 120.00333 * 151.81045 * 7 6 5
10 10 N 1.31614 * 119.99688 * 343.08620 * 9 7 6
11 11 Si 1.86797 * 120.00025 * 163.08508 * 9 7 6
12 12 H 1.48495 * 109.47449 * 90.00164 * 11 9 7
13 13 H 1.48506 * 109.46909 * 210.00149 * 11 9 7
14 14 H 1.48498 * 109.47327 * 330.00027 * 11 9 7
15 15 C 1.46927 * 118.73770 * 306.39378 * 6 5 4
16 16 C 1.53035 * 109.46231 * 119.97022 * 2 1 3
17 17 H 1.08996 * 109.49885 * 301.36701 * 16 2 1
18 18 N 1.46500 * 109.50150 * 61.43210 * 16 2 1
19 19 C 1.34776 * 120.00604 * 204.94246 * 18 16 2
20 20 O 1.21654 * 119.99705 * 359.97438 * 19 18 16
21 21 C 1.47049 * 120.00320 * 179.97438 * 19 18 16
22 22 C 1.35878 * 125.43155 * 179.97438 * 21 19 18
23 23 C 1.41576 * 107.74346 * 180.02562 * 22 21 19
24 24 C 1.40130 * 133.34982 * 180.02562 * 23 22 21
25 25 C 1.36611 * 119.81095 * 179.97438 * 24 23 22
26 26 F 1.35102 * 119.72066 * 180.02562 * 25 24 23
27 27 C 1.39134 * 120.56706 * 0.02628 * 25 24 23
28 28 C 1.37663 * 120.62123 * 359.97438 * 27 25 24
29 29 C 1.39218 * 119.84142 * 359.97438 * 28 27 25
30 30 N 1.37576 * 133.14866 * 180.35991 * 29 28 27
31 31 H 0.96998 * 125.61319 * 359.97438 * 30 29 28
32 32 H 1.09008 * 109.46973 * 300.03093 * 1 2 3
33 33 H 1.09000 * 109.47193 * 60.02938 * 1 2 3
34 34 H 1.09001 * 109.47784 * 180.02562 * 1 2 3
35 35 H 1.08994 * 109.48770 * 58.67527 * 4 2 1
36 36 H 1.08997 * 109.48574 * 298.58764 * 4 2 1
37 37 H 1.09008 * 109.58540 * 294.84785 * 5 4 2
38 38 H 1.09002 * 109.58198 * 174.42590 * 5 4 2
39 39 H 0.97003 * 119.99954 * 180.02562 * 10 9 7
40 40 H 1.08996 * 109.58764 * 293.81910 * 15 6 5
41 41 H 1.09005 * 109.58632 * 173.38878 * 15 6 5
42 42 H 0.97008 * 119.99773 * 24.65882 * 18 16 2
43 43 H 1.08009 * 126.12781 * 359.97438 * 22 21 19
44 44 H 1.07994 * 120.09603 * 359.95831 * 24 23 22
45 45 H 1.07994 * 119.69204 * 179.97438 * 27 25 24
46 46 H 1.08001 * 120.07942 * 180.02562 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8930 1.0278 0.0000
4 6 2.0411 -0.7212 -1.2502
5 6 3.5726 -0.6891 -1.2635
6 7 4.0685 -1.2491 0.0010
7 6 4.9769 -2.2737 0.0017
8 1 5.0052 -2.9709 -0.8227
9 6 5.8617 -2.4163 1.0618
10 7 6.0658 -1.4124 1.8880
11 14 6.7625 -4.0329 1.3156
12 1 8.0471 -4.0060 0.5712
13 1 7.0329 -4.2269 2.7629
14 1 5.9235 -5.1511 0.8146
15 6 3.5713 -0.6887 1.2649
16 6 2.0398 -0.7208 1.2500
17 1 1.6568 -0.2212 2.1397
18 7 1.5801 -2.1117 1.2342
19 6 1.4527 -2.7927 2.3903
20 8 1.7199 -2.2524 3.4470
21 6 0.9908 -4.1886 2.3744
22 6 0.8238 -4.9756 3.4694
23 6 0.3693 -6.2410 3.0260
24 6 0.0333 -7.4289 3.6891
25 6 -0.3849 -8.5128 2.9706
26 9 -0.7089 -9.6570 3.6118
27 6 -0.4801 -8.4487 1.5840
28 6 -0.1552 -7.2922 0.9116
29 6 0.2725 -6.1743 1.6226
30 7 0.6518 -4.9071 1.2444
31 1 0.6796 -4.5740 0.3338
32 1 -0.3633 0.5144 0.8898
33 1 -0.3633 0.5134 -0.8902
34 1 -0.3635 -1.0276 0.0005
35 1 1.6589 -0.2213 -2.1402
36 1 1.6990 -1.7560 -1.2384
37 1 3.9157 0.3404 -1.3666
38 1 3.9433 -1.2852 -2.0975
39 1 6.6843 -1.5118 2.6286
40 1 3.9142 0.3408 1.3680
41 1 3.9412 -1.2846 2.0994
42 1 1.3635 -2.5414 0.3918
43 1 1.0059 -4.6876 4.4943
44 1 0.1050 -7.4874 4.7651
45 1 -0.8120 -9.3142 1.0299
46 1 -0.2327 -7.2520 -0.1649
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000967655704.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:40
Heat of formation + Delta-G solvation = -4.061752 kcal
Electronic energy + Delta-G solvation = -30759.950205 eV
Core-core repulsion = 26564.778468 eV
Total energy + Delta-G solvation = -4195.171737 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-48.87622 -41.63188 -39.57024 -37.68621 -36.53100 -34.25975 -33.03490 -32.30974
-31.11273 -29.86697 -29.17297 -28.71814 -27.39017 -24.52863 -23.91760 -22.41688
-22.23511 -21.44664 -21.18747 -20.12256 -18.86270 -18.61706 -17.53180 -17.00786
-16.73735 -15.83488 -15.68138 -15.30789 -15.14226 -14.79336 -14.57494 -14.13156
-14.01107 -13.82375 -13.71089 -13.66387 -13.36288 -13.23160 -13.19881 -12.98727
-12.69426 -12.61460 -12.04145 -11.69265 -11.51756 -11.36258 -11.19776 -11.11234
-10.98087 -10.75625 -10.61621 -10.30409 -10.08243 -10.02059 -9.86946 -9.69007
-9.57034 -8.60246 -8.51415 -8.24710 -7.92128 -6.71325 -5.82689 -3.26312
0.60169 1.27827 2.10668 2.81069 3.34678 3.40130 3.42931 3.44115
3.54159 3.69847 4.21508 4.42932 4.45678 4.73964 4.89259 5.04977
5.07421 5.12120 5.14231 5.23748 5.28995 5.36060 5.46641 5.52013
5.75481 5.77243 5.81654 5.87007 5.88984 6.02305 6.04201 6.07626
6.17602 6.25058 6.32164 6.39714 6.44994 6.52236 6.54800 6.64875
6.75497 6.84955 6.88106 7.23535 7.26254 7.59043 7.74186 7.87520
8.40534 8.51255 9.15636 9.79581 10.34993 11.25264
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.010444 B = 0.003770 C = 0.003182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2680.316324 B = 7425.704549 C = 8796.972178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.095 4.095
3 H 0.080 0.920
4 C -0.128 4.128
5 C 0.141 3.859
6 N -0.587 5.587
7 C -0.259 4.259
8 H 0.062 0.938
9 C 0.011 3.989
10 N -0.895 5.895
11 Si 0.896 3.104
12 H -0.287 1.287
13 H -0.288 1.288
14 H -0.281 1.281
15 C 0.160 3.840
16 C 0.126 3.874
17 H 0.080 0.920
18 N -0.692 5.692
19 C 0.578 3.422
20 O -0.523 6.523
21 C 0.048 3.952
22 C -0.122 4.122
23 C -0.090 4.090
24 C -0.099 4.099
25 C 0.067 3.933
26 F -0.145 7.145
27 C -0.128 4.128
28 C -0.096 4.096
29 C 0.098 3.902
30 N -0.571 5.571
31 H 0.420 0.580
32 H 0.052 0.948
33 H 0.051 0.949
34 H 0.048 0.952
35 H 0.055 0.945
36 H 0.050 0.950
37 H 0.019 0.981
38 H 0.053 0.947
39 H 0.255 0.745
40 H 0.028 0.972
41 H 0.098 0.902
42 H 0.390 0.610
43 H 0.158 0.842
44 H 0.137 0.863
45 H 0.138 0.862
46 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.685 -6.424 -3.610 17.329
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.114 4.114
3 H 0.099 0.901
4 C -0.168 4.168
5 C 0.015 3.985
6 N -0.310 5.310
7 C -0.388 4.388
8 H 0.080 0.920
9 C -0.189 4.189
10 N -0.539 5.539
11 Si 0.725 3.275
12 H -0.214 1.214
13 H -0.214 1.214
14 H -0.207 1.207
15 C 0.033 3.967
16 C 0.020 3.980
17 H 0.098 0.902
18 N -0.341 5.341
19 C 0.363 3.637
20 O -0.399 6.399
21 C -0.063 4.063
22 C -0.148 4.148
23 C -0.095 4.095
24 C -0.118 4.118
25 C 0.046 3.954
26 F -0.124 7.124
27 C -0.148 4.148
28 C -0.117 4.117
29 C -0.012 4.012
30 N -0.175 5.175
31 H 0.258 0.742
32 H 0.071 0.929
33 H 0.070 0.930
34 H 0.067 0.933
35 H 0.074 0.926
36 H 0.069 0.931
37 H 0.037 0.963
38 H 0.072 0.928
39 H 0.065 0.935
40 H 0.046 0.954
41 H 0.116 0.884
42 H 0.224 0.776
43 H 0.176 0.824
44 H 0.155 0.845
45 H 0.156 0.844
46 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -15.323 -5.904 -2.811 16.660
hybrid contribution 0.523 -1.113 -0.657 1.394
sum -14.800 -7.016 -3.468 16.742
Atomic orbital electron populations
1.21852 0.95936 1.01202 1.01189 1.21341 0.94596 1.00083 0.95354
0.90130 1.22094 0.99389 0.99074 0.96204 1.20942 0.90564 0.96667
0.90348 1.43972 1.48309 1.39604 0.99074 1.19028 1.10079 1.03056
1.06661 0.91994 1.25001 0.97029 0.97125 0.99761 1.69982 1.37042
1.28941 1.17907 0.86417 0.79726 0.83931 0.77392 1.21362 1.21387
1.20654 1.21214 0.86403 0.97997 0.91080 1.21889 0.99195 0.79687
0.97216 0.90211 1.45737 1.66372 1.14531 1.07502 1.17053 0.78361
0.83449 0.84839 1.90844 1.50426 1.68056 1.30567 1.20510 1.05812
0.93631 0.86323 1.20848 1.04039 0.91107 0.98796 1.17875 1.05110
0.94519 0.91995 1.20272 1.00250 0.90807 1.00508 1.16991 1.04972
0.82896 0.90498 1.91479 1.90873 1.48058 1.82004 1.20772 1.02965
0.98695 0.92411 1.19890 1.02015 0.90232 0.99541 1.18322 1.02468
0.86383 0.94053 1.41991 1.57020 1.09786 1.08704 0.74185 0.92913
0.93022 0.93321 0.92642 0.93142 0.96315 0.92811 0.93473 0.95425
0.88408 0.77572 0.82397 0.84527 0.84441 0.84954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.68 9.05 37.15 0.34 -1.34 16
2 C -0.09 -1.36 2.48 -90.55 -0.22 -1.58 16
3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16
4 C -0.13 -1.84 5.20 -26.57 -0.14 -1.98 16
5 C 0.14 2.65 6.52 -3.71 -0.02 2.63 16
6 N -0.59 -13.53 2.91 -172.32 -0.50 -14.03 16
7 C -0.26 -6.77 9.58 -15.06 -0.14 -6.91 16
8 H 0.06 1.60 7.89 -52.49 -0.41 1.18 16
9 C 0.01 0.29 4.92 -17.43 -0.09 0.20 16
10 N -0.90 -25.91 11.20 55.49 0.62 -25.29 16
11 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16
12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16
13 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16
14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16
15 C 0.16 3.64 4.90 -3.71 -0.02 3.63 16
16 C 0.13 2.22 2.24 -67.81 -0.15 2.07 16
17 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16
18 N -0.69 -11.34 4.25 -54.88 -0.23 -11.57 16
19 C 0.58 10.44 7.77 -12.69 -0.10 10.34 16
20 O -0.52 -11.26 16.50 5.23 0.09 -11.17 16
21 C 0.05 0.74 6.97 -82.30 -0.57 0.17 16
22 C -0.12 -1.83 10.53 -39.16 -0.41 -2.24 16
23 C -0.09 -1.23 6.16 -106.93 -0.66 -1.89 16
24 C -0.10 -1.21 10.03 -39.46 -0.40 -1.60 16
25 C 0.07 0.78 7.24 -39.84 -0.29 0.49 16
26 F -0.15 -1.75 17.25 2.25 0.04 -1.71 16
27 C -0.13 -1.29 9.99 -39.46 -0.39 -1.69 16
28 C -0.10 -0.98 10.07 -39.43 -0.40 -1.38 16
29 C 0.10 1.23 7.25 -83.94 -0.61 0.62 16
30 N -0.57 -7.16 6.08 -7.35 -0.04 -7.20 16
31 H 0.42 4.18 8.12 -40.82 -0.33 3.85 16
32 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16
33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16
34 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16
35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
36 H 0.05 0.70 6.40 -51.93 -0.33 0.36 16
37 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16
38 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16
39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16
40 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.10 2.66 6.06 -51.93 -0.31 2.35 16
42 H 0.39 5.53 5.68 -40.82 -0.23 5.30 16
43 H 0.16 2.27 8.06 -52.48 -0.42 1.84 16
44 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16
45 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16
46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16
LS Contribution 376.59 15.07 5.68 5.68
Total: -1.00 -31.48 376.59 -9.85 -41.33
By element:
Atomic # 1 Polarization: 13.71 SS G_CDS: -6.18 Total: 7.53 kcal
Atomic # 6 Polarization: 3.81 SS G_CDS: -4.28 Total: -0.46 kcal
Atomic # 7 Polarization: -57.94 SS G_CDS: -0.16 Total: -58.10 kcal
Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal
Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal
Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal
Total LS contribution 5.68 Total: 5.68 kcal
Total: -31.48 -9.85 -41.33 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000967655704.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.272 kcal
(2) G-P(sol) polarization free energy of solvation -31.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.788 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.062 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds