Wall clock time and date at job start Wed Apr 1 2020 05:06:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 H 1.09001 * 109.45454 * 2 1
4 4 C 1.53115 * 109.50078 * 240.01993 * 2 1 3
5 5 C 1.53197 * 109.32809 * 178.63374 * 4 2 1
6 6 N 1.46919 * 108.77961 * 54.63329 * 5 4 2
7 7 C 1.36933 * 120.63302 * 126.40935 * 6 5 4
8 8 H 1.08002 * 119.99949 * 331.82053 * 7 6 5
9 9 C 1.38814 * 120.00333 * 151.81045 * 7 6 5
10 10 N 1.31614 * 119.99688 * 343.08620 * 9 7 6
11 11 Si 1.86797 * 120.00025 * 163.08508 * 9 7 6
12 12 H 1.48495 * 109.47449 * 90.00164 * 11 9 7
13 13 H 1.48506 * 109.46909 * 210.00149 * 11 9 7
14 14 H 1.48498 * 109.47327 * 330.00027 * 11 9 7
15 15 C 1.46927 * 118.73770 * 306.39378 * 6 5 4
16 16 C 1.53035 * 109.46231 * 119.97022 * 2 1 3
17 17 H 1.08996 * 109.49885 * 301.36701 * 16 2 1
18 18 N 1.46500 * 109.50150 * 61.43210 * 16 2 1
19 19 C 1.34776 * 120.00604 * 204.94246 * 18 16 2
20 20 O 1.21654 * 119.99705 * 359.97438 * 19 18 16
21 21 C 1.47049 * 120.00320 * 179.97438 * 19 18 16
22 22 C 1.35878 * 125.43155 * 179.97438 * 21 19 18
23 23 C 1.41576 * 107.74346 * 180.02562 * 22 21 19
24 24 C 1.40130 * 133.34982 * 180.02562 * 23 22 21
25 25 C 1.36611 * 119.81095 * 179.97438 * 24 23 22
26 26 F 1.35102 * 119.72066 * 180.02562 * 25 24 23
27 27 C 1.39134 * 120.56706 * 0.02628 * 25 24 23
28 28 C 1.37663 * 120.62123 * 359.97438 * 27 25 24
29 29 C 1.39218 * 119.84142 * 359.97438 * 28 27 25
30 30 N 1.37576 * 133.14866 * 180.35991 * 29 28 27
31 31 H 0.96998 * 125.61319 * 359.97438 * 30 29 28
32 32 H 1.09008 * 109.46973 * 300.03093 * 1 2 3
33 33 H 1.09000 * 109.47193 * 60.02938 * 1 2 3
34 34 H 1.09001 * 109.47784 * 180.02562 * 1 2 3
35 35 H 1.08994 * 109.48770 * 58.67527 * 4 2 1
36 36 H 1.08997 * 109.48574 * 298.58764 * 4 2 1
37 37 H 1.09008 * 109.58540 * 294.84785 * 5 4 2
38 38 H 1.09002 * 109.58198 * 174.42590 * 5 4 2
39 39 H 0.97003 * 119.99954 * 180.02562 * 10 9 7
40 40 H 1.08996 * 109.58764 * 293.81910 * 15 6 5
41 41 H 1.09005 * 109.58632 * 173.38878 * 15 6 5
42 42 H 0.97008 * 119.99773 * 24.65882 * 18 16 2
43 43 H 1.08009 * 126.12781 * 359.97438 * 22 21 19
44 44 H 1.07994 * 120.09603 * 359.95831 * 24 23 22
45 45 H 1.07994 * 119.69204 * 179.97438 * 27 25 24
46 46 H 1.08001 * 120.07942 * 180.02562 * 28 27 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8930 1.0278 0.0000
4 6 2.0411 -0.7212 -1.2502
5 6 3.5726 -0.6891 -1.2635
6 7 4.0685 -1.2491 0.0010
7 6 4.9769 -2.2737 0.0017
8 1 5.0052 -2.9709 -0.8227
9 6 5.8617 -2.4163 1.0618
10 7 6.0658 -1.4124 1.8880
11 14 6.7625 -4.0329 1.3156
12 1 8.0471 -4.0060 0.5712
13 1 7.0329 -4.2269 2.7629
14 1 5.9235 -5.1511 0.8146
15 6 3.5713 -0.6887 1.2649
16 6 2.0398 -0.7208 1.2500
17 1 1.6568 -0.2212 2.1397
18 7 1.5801 -2.1117 1.2342
19 6 1.4527 -2.7927 2.3903
20 8 1.7199 -2.2524 3.4470
21 6 0.9908 -4.1886 2.3744
22 6 0.8238 -4.9756 3.4694
23 6 0.3693 -6.2410 3.0260
24 6 0.0333 -7.4289 3.6891
25 6 -0.3849 -8.5128 2.9706
26 9 -0.7089 -9.6570 3.6118
27 6 -0.4801 -8.4487 1.5840
28 6 -0.1552 -7.2922 0.9116
29 6 0.2725 -6.1743 1.6226
30 7 0.6518 -4.9071 1.2444
31 1 0.6796 -4.5740 0.3338
32 1 -0.3633 0.5144 0.8898
33 1 -0.3633 0.5134 -0.8902
34 1 -0.3635 -1.0276 0.0005
35 1 1.6589 -0.2213 -2.1402
36 1 1.6990 -1.7560 -1.2384
37 1 3.9157 0.3404 -1.3666
38 1 3.9433 -1.2852 -2.0975
39 1 6.6843 -1.5118 2.6286
40 1 3.9142 0.3408 1.3680
41 1 3.9412 -1.2846 2.0994
42 1 1.3635 -2.5414 0.3918
43 1 1.0059 -4.6876 4.4943
44 1 0.1050 -7.4874 4.7651
45 1 -0.8120 -9.3142 1.0299
46 1 -0.2327 -7.2520 -0.1649
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000967655704.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:06:39
Heat of formation + Delta-G solvation = -22.765843 kcal
Electronic energy + Delta-G solvation = -30760.761275 eV
Core-core repulsion = 26564.778468 eV
Total energy + Delta-G solvation = -4195.982808 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-49.79437 -42.68003 -40.96616 -39.11974 -37.53283 -35.98468 -34.45780 -33.31160
-32.85630 -31.26399 -30.14814 -29.89515 -28.90595 -26.05703 -25.27312 -23.72450
-23.29716 -22.76845 -22.50003 -21.31300 -20.37351 -19.74390 -18.75506 -18.38591
-17.97164 -16.96717 -16.84696 -16.71254 -16.55229 -16.17537 -15.83468 -15.62713
-15.23248 -15.14220 -14.94369 -14.89918 -14.66948 -14.51254 -14.27210 -14.10278
-14.07638 -13.63125 -13.55791 -13.16244 -13.03131 -12.76102 -12.63275 -12.51918
-12.29833 -12.27068 -11.98821 -11.97428 -11.58571 -11.40828 -11.18157 -11.08954
-11.05337 -10.56007 -10.10519 -9.24826 -8.90716 -8.65491 -7.88697 -5.33027
-0.39702 0.35797 0.98694 1.37248 1.41581 1.47306 1.77446 2.09755
2.32925 2.46048 2.66134 3.27945 3.29385 3.56977 3.66158 3.70752
3.86205 3.95653 3.97034 4.08308 4.10596 4.28009 4.31098 4.49500
4.58169 4.65447 4.69665 4.78669 4.82571 4.87177 4.94764 4.96343
5.06503 5.16076 5.16889 5.18233 5.22583 5.24477 5.39441 5.44696
5.47634 5.50557 5.57358 5.65470 5.70910 5.93067 6.32192 6.37446
6.54315 7.13077 7.14087 7.86492 8.36820 9.16236
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.010444 B = 0.003770 C = 0.003182
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2680.316324 B = 7425.704549 C = 8796.972178
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.088 4.088
3 H 0.078 0.922
4 C -0.115 4.115
5 C 0.134 3.866
6 N -0.599 5.599
7 C -0.249 4.249
8 H 0.070 0.930
9 C -0.046 4.046
10 N -0.931 5.931
11 Si 0.948 3.052
12 H -0.281 1.281
13 H -0.304 1.304
14 H -0.270 1.270
15 C 0.170 3.830
16 C 0.137 3.863
17 H 0.069 0.931
18 N -0.679 5.679
19 C 0.575 3.425
20 O -0.570 6.570
21 C 0.026 3.974
22 C -0.129 4.129
23 C -0.113 4.113
24 C -0.109 4.109
25 C 0.060 3.940
26 F -0.148 7.148
27 C -0.117 4.117
28 C -0.089 4.089
29 C 0.097 3.903
30 N -0.557 5.557
31 H 0.432 0.568
32 H 0.050 0.950
33 H 0.077 0.923
34 H 0.056 0.944
35 H 0.092 0.908
36 H 0.063 0.937
37 H 0.013 0.987
38 H 0.058 0.942
39 H 0.245 0.755
40 H -0.001 1.001
41 H 0.048 0.952
42 H 0.403 0.597
43 H 0.151 0.849
44 H 0.143 0.857
45 H 0.170 0.830
46 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.276 -8.317 -6.936 21.243
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.107 4.107
3 H 0.097 0.903
4 C -0.154 4.154
5 C 0.009 3.991
6 N -0.323 5.323
7 C -0.380 4.380
8 H 0.088 0.912
9 C -0.242 4.242
10 N -0.578 5.578
11 Si 0.777 3.223
12 H -0.208 1.208
13 H -0.231 1.231
14 H -0.195 1.195
15 C 0.043 3.957
16 C 0.031 3.969
17 H 0.087 0.913
18 N -0.329 5.329
19 C 0.362 3.638
20 O -0.449 6.449
21 C -0.085 4.085
22 C -0.156 4.156
23 C -0.118 4.118
24 C -0.129 4.129
25 C 0.040 3.960
26 F -0.127 7.127
27 C -0.137 4.137
28 C -0.109 4.109
29 C -0.014 4.014
30 N -0.163 5.163
31 H 0.273 0.727
32 H 0.069 0.931
33 H 0.096 0.904
34 H 0.075 0.925
35 H 0.111 0.889
36 H 0.081 0.919
37 H 0.031 0.969
38 H 0.076 0.924
39 H 0.054 0.946
40 H 0.017 0.983
41 H 0.067 0.933
42 H 0.240 0.760
43 H 0.168 0.832
44 H 0.161 0.839
45 H 0.187 0.813
46 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -17.950 -7.808 -6.228 20.542
hybrid contribution 1.304 -0.585 0.356 1.473
sum -16.646 -8.393 -5.871 19.545
Atomic orbital electron populations
1.21769 0.92971 1.02134 1.02415 1.21300 0.96877 0.99294 0.93196
0.90320 1.21977 0.95512 1.00402 0.97531 1.21169 0.93771 0.95962
0.88159 1.44164 1.48066 1.39423 1.00618 1.19387 1.09184 1.03455
1.05971 0.91202 1.25648 0.98696 0.99438 1.00406 1.70147 1.38341
1.30689 1.18594 0.85566 0.79105 0.81397 0.76202 1.20789 1.23111
1.19524 1.20886 0.89923 0.95219 0.89712 1.21571 0.95347 0.80922
0.99104 0.91329 1.45566 1.65569 1.13990 1.07796 1.17436 0.77538
0.84385 0.84465 1.90812 1.52528 1.69383 1.32204 1.20049 1.08035
0.92654 0.87731 1.20971 1.03848 0.92139 0.98665 1.17952 1.06425
0.94346 0.93055 1.20393 1.00531 0.90759 1.01185 1.17210 1.04862
0.82526 0.91413 1.91476 1.90872 1.48090 1.82251 1.21168 1.01229
0.99672 0.91668 1.20286 1.00532 0.88872 1.01255 1.18647 1.02122
0.86778 0.93821 1.41816 1.56444 1.09537 1.08466 0.72690 0.93127
0.90434 0.92532 0.88916 0.91886 0.96925 0.92378 0.94593 0.98255
0.93322 0.75967 0.83158 0.83889 0.81283 0.81326
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.66 9.05 71.98 0.65 -2.01 16
2 C -0.09 -2.32 2.48 -10.75 -0.03 -2.34 16
3 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16
4 C -0.12 -2.90 5.20 30.70 0.16 -2.75 16
5 C 0.13 4.82 6.52 86.37 0.56 5.38 16
6 N -0.60 -27.82 2.91 -699.08 -2.03 -29.86 16
7 C -0.25 -13.12 9.58 84.03 0.81 -12.31 16
8 H 0.07 3.52 7.89 -2.91 -0.02 3.50 16
9 C -0.05 -2.60 4.92 84.86 0.42 -2.18 16
10 N -0.93 -56.73 11.20 21.65 0.24 -56.48 16
11 Si 0.95 46.11 29.59 68.60 2.03 48.14 16
12 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16
13 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16
14 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16
15 C 0.17 8.09 4.90 86.36 0.42 8.51 16
16 C 0.14 4.88 2.24 45.07 0.10 4.98 16
17 H 0.07 2.62 7.58 -2.39 -0.02 2.60 16
18 N -0.68 -22.05 4.25 -445.79 -1.90 -23.95 16
19 C 0.58 21.38 7.77 86.55 0.67 22.06 16
20 O -0.57 -26.11 16.50 -4.20 -0.07 -26.18 16
21 C 0.03 0.82 6.97 39.91 0.28 1.10 16
22 C -0.13 -3.99 10.53 22.55 0.24 -3.76 16
23 C -0.11 -3.01 6.16 -21.36 -0.13 -3.14 16
24 C -0.11 -2.56 10.03 22.35 0.22 -2.34 16
25 C 0.06 1.26 7.24 22.10 0.16 1.42 16
26 F -0.15 -3.26 17.25 44.97 0.78 -2.48 16
27 C -0.12 -1.90 9.99 22.35 0.22 -1.68 16
28 C -0.09 -1.44 10.07 22.37 0.23 -1.22 16
29 C 0.10 2.21 7.25 39.11 0.28 2.49 16
30 N -0.56 -12.95 6.08 -177.15 -1.08 -14.02 16
31 H 0.43 7.37 8.12 -92.71 -0.75 6.62 16
32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16
33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
34 H 0.06 1.04 7.54 -2.39 -0.02 1.02 16
35 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16
36 H 0.06 1.46 6.40 -2.39 -0.02 1.45 16
37 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16
38 H 0.06 2.02 7.93 -2.39 -0.02 2.00 16
39 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16
40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16
41 H 0.05 2.82 6.06 -2.38 -0.01 2.80 16
42 H 0.40 10.64 5.68 -92.70 -0.53 10.12 16
43 H 0.15 4.67 8.06 -2.91 -0.02 4.65 16
44 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16
45 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16
46 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16
Total: -1.00 -73.33 376.59 2.99 -70.34
By element:
Atomic # 1 Polarization: 22.51 SS G_CDS: -0.25 Total: 22.27 kcal
Atomic # 6 Polarization: 6.96 SS G_CDS: 5.27 Total: 12.22 kcal
Atomic # 7 Polarization: -119.55 SS G_CDS: -4.76 Total: -124.31 kcal
Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.18 kcal
Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal
Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal
Total: -73.33 2.99 -70.34 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000967655704.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.575 kcal
(2) G-P(sol) polarization free energy of solvation -73.332 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.766 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds