Wall clock time and date at job start Wed Apr 1 2020 05:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.45867 * 2 1 4 4 C 1.53042 * 109.46221 * 119.95636 * 2 1 3 5 5 C 1.53188 * 109.31428 * 181.38971 * 4 2 1 6 6 N 1.46920 * 108.77450 * 305.36356 * 5 4 2 7 7 C 1.36935 * 120.63245 * 233.63229 * 6 5 4 8 8 H 1.08001 * 120.00330 * 27.67147 * 7 6 5 9 9 C 1.38811 * 120.00409 * 207.66920 * 7 6 5 10 10 N 1.31627 * 119.99625 * 17.36198 * 9 7 6 11 11 Si 1.86796 * 120.00488 * 197.35964 * 9 7 6 12 12 H 1.48501 * 109.47123 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47001 * 120.00301 * 11 9 7 14 14 H 1.48503 * 109.47553 * 240.00063 * 11 9 7 15 15 C 1.46926 * 118.74108 * 53.61012 * 6 5 4 16 16 C 1.53034 * 109.46184 * 240.02664 * 2 1 3 17 17 H 1.09000 * 109.50001 * 58.62637 * 16 2 1 18 18 N 1.46507 * 109.49931 * 298.56271 * 16 2 1 19 19 C 1.34771 * 119.99843 * 154.99996 * 18 16 2 20 20 O 1.21641 * 120.00335 * 359.97438 * 19 18 16 21 21 C 1.47060 * 119.99468 * 180.02562 * 19 18 16 22 22 C 1.35878 * 125.42581 * 180.02562 * 21 19 18 23 23 C 1.41586 * 107.73774 * 179.97438 * 22 21 19 24 24 C 1.40124 * 133.34743 * 180.02562 * 23 22 21 25 25 C 1.36611 * 119.81369 * 179.97438 * 24 23 22 26 26 F 1.35102 * 119.71994 * 180.02562 * 25 24 23 27 27 C 1.39128 * 120.56224 * 359.97438 * 25 24 23 28 28 C 1.37665 * 120.62578 * 0.02562 * 27 25 24 29 29 C 1.39213 * 119.84072 * 0.27633 * 28 27 25 30 30 N 1.37579 * 133.15036 * 180.44707 * 29 28 27 31 31 H 0.96999 * 125.60761 * 359.24448 * 30 29 28 32 32 H 1.08998 * 109.46726 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47127 * 299.97162 * 1 2 3 34 34 H 1.08991 * 109.47318 * 59.97681 * 1 2 3 35 35 H 1.09006 * 109.49611 * 301.33971 * 4 2 1 36 36 H 1.08997 * 109.49502 * 61.43194 * 4 2 1 37 37 H 1.08996 * 109.58826 * 65.15267 * 5 4 2 38 38 H 1.09004 * 109.58572 * 185.43729 * 5 4 2 39 39 H 0.96999 * 120.00001 * 179.97438 * 10 9 7 40 40 H 1.08994 * 109.59151 * 186.60623 * 15 6 5 41 41 H 1.09002 * 109.58599 * 66.17293 * 15 6 5 42 42 H 0.97001 * 119.99506 * 335.00600 * 18 16 2 43 43 H 1.07994 * 126.13413 * 359.93103 * 22 21 19 44 44 H 1.08003 * 120.09241 * 359.97438 * 24 23 22 45 45 H 1.07996 * 119.68752 * 179.97438 * 27 25 24 46 46 H 1.07994 * 120.07751 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 1.2502 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2487 0.0003 7 6 4.9758 -2.2738 0.0004 8 1 5.0086 -2.9660 0.8288 9 6 5.8541 -2.4233 -1.0641 10 7 6.0604 -1.4216 -1.8926 11 14 6.7431 -4.0460 -1.3207 12 1 6.3401 -5.0043 -0.2603 13 1 6.3858 -4.6012 -2.6509 14 1 8.2098 -3.8227 -1.2553 15 6 3.5715 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6568 -0.2214 -2.1398 18 7 1.5802 -2.1119 -1.2339 19 6 1.4518 -2.7924 -2.3901 20 8 1.7170 -2.2516 -3.4469 21 6 0.9898 -4.1885 -2.3740 22 6 0.8218 -4.9752 -3.4690 23 6 0.3678 -6.2408 -3.0254 24 6 0.0321 -7.4288 -3.6883 25 6 -0.3847 -8.5132 -2.9696 26 9 -0.7075 -9.6578 -3.6107 27 6 -0.4786 -8.4493 -1.5830 28 6 -0.1539 -7.2926 -0.9107 29 6 0.2673 -6.1727 -1.6223 30 7 0.6580 -4.9092 -1.2433 31 1 0.6916 -4.5779 -0.3322 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8903 34 1 -0.3633 0.5141 -0.8897 35 1 1.6572 -0.2203 2.1399 36 1 1.6979 -1.7554 1.2386 37 1 3.9143 0.3412 1.3674 38 1 3.9417 -1.2820 2.1002 39 1 6.6744 -1.5259 -2.6363 40 1 3.9417 -1.2847 -2.0981 41 1 3.9143 0.3409 -1.3673 42 1 1.3683 -2.5429 -0.3912 43 1 1.0015 -4.6866 -4.4941 44 1 0.1026 -7.4869 -4.7645 45 1 -0.8101 -9.3149 -1.0288 46 1 -0.2296 -7.2530 0.1659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967655708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:44 Heat of formation + Delta-G solvation = -4.014077 kcal Electronic energy + Delta-G solvation = -30764.711926 eV Core-core repulsion = 26569.542256 eV Total energy + Delta-G solvation = -4195.169670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.87693 -41.63224 -39.57361 -37.69138 -36.53281 -34.26232 -33.03980 -32.31097 -31.11336 -29.86784 -29.17364 -28.71904 -27.39219 -24.53070 -23.92001 -22.41797 -22.23696 -21.44814 -21.19014 -20.12364 -18.86508 -18.61772 -17.53238 -17.00876 -16.74049 -15.83580 -15.68227 -15.31131 -15.14524 -14.79403 -14.57624 -14.13155 -14.00994 -13.82670 -13.71276 -13.66406 -13.36377 -13.23176 -13.19831 -12.98975 -12.69508 -12.61620 -12.04766 -11.69067 -11.52082 -11.36482 -11.19949 -11.11310 -10.98223 -10.77872 -10.60815 -10.27824 -10.08309 -10.02296 -9.86540 -9.68761 -9.57500 -8.60475 -8.51719 -8.24846 -7.92168 -6.72443 -5.82914 -3.26160 0.60107 1.27663 2.10631 2.80898 3.35043 3.40106 3.42303 3.44899 3.54028 3.69819 4.21460 4.42855 4.45468 4.73898 4.89215 5.04954 5.07444 5.12050 5.14179 5.23588 5.28893 5.35522 5.46557 5.51975 5.75510 5.77189 5.81573 5.87018 5.88965 6.02238 6.04129 6.07560 6.17473 6.24919 6.31975 6.39640 6.44910 6.52047 6.54737 6.64620 6.75395 6.84771 6.87958 7.23422 7.26074 7.59069 7.74385 7.87506 8.39966 8.51230 9.15287 9.79354 10.34445 11.24975 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.003774 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.636363 B = 7417.591578 C = 8784.442039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.128 4.128 5 C 0.141 3.859 6 N -0.587 5.587 7 C -0.258 4.258 8 H 0.063 0.937 9 C 0.010 3.990 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.289 1.289 15 C 0.159 3.841 16 C 0.126 3.874 17 H 0.080 0.920 18 N -0.692 5.692 19 C 0.578 3.422 20 O -0.523 6.523 21 C 0.048 3.952 22 C -0.121 4.121 23 C -0.090 4.090 24 C -0.099 4.099 25 C 0.067 3.933 26 F -0.145 7.145 27 C -0.128 4.128 28 C -0.096 4.096 29 C 0.098 3.902 30 N -0.571 5.571 31 H 0.420 0.580 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.019 0.981 38 H 0.053 0.947 39 H 0.255 0.745 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.390 0.610 43 H 0.158 0.842 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.684 -6.413 3.654 17.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.168 4.168 5 C 0.015 3.985 6 N -0.310 5.310 7 C -0.387 4.387 8 H 0.081 0.919 9 C -0.190 4.190 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.216 1.216 15 C 0.033 3.967 16 C 0.020 3.980 17 H 0.098 0.902 18 N -0.342 5.342 19 C 0.363 3.637 20 O -0.399 6.399 21 C -0.063 4.063 22 C -0.148 4.148 23 C -0.095 4.095 24 C -0.118 4.118 25 C 0.047 3.953 26 F -0.124 7.124 27 C -0.148 4.148 28 C -0.117 4.117 29 C -0.012 4.012 30 N -0.175 5.175 31 H 0.258 0.742 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.046 0.954 42 H 0.224 0.776 43 H 0.176 0.824 44 H 0.155 0.845 45 H 0.156 0.844 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.321 -5.896 2.866 16.665 hybrid contribution 0.513 -1.110 0.639 1.380 sum -14.809 -7.007 3.505 16.753 Atomic orbital electron populations 1.21852 0.95937 1.01208 1.01183 1.21331 0.94605 1.00081 0.95351 0.90134 1.22081 0.99378 0.99087 0.96215 1.20933 0.90577 0.96675 0.90335 1.43988 1.48324 1.39590 0.99088 1.19087 1.10292 1.03133 1.06217 0.91888 1.24993 0.97070 0.97153 0.99759 1.70001 1.37294 1.28898 1.17672 0.86359 0.79326 0.83914 0.77965 1.20416 1.21374 1.21614 1.21224 0.86431 0.98014 0.91081 1.21892 0.99175 0.79693 0.97223 0.90188 1.45741 1.66463 1.14482 1.07476 1.17051 0.78351 0.83451 0.84843 1.90841 1.50445 1.68027 1.30560 1.20515 1.05886 0.93582 0.86302 1.20849 1.04061 0.91064 0.98804 1.17879 1.05067 0.94521 0.92025 1.20272 1.00244 0.90817 1.00508 1.16990 1.04986 0.82874 0.90500 1.91479 1.90902 1.48021 1.82012 1.20771 1.02959 0.98705 0.92410 1.19888 1.02104 0.90147 0.99530 1.18325 1.02411 0.86469 0.94039 1.41990 1.56864 1.10031 1.08625 0.74174 0.93314 0.93026 0.92918 0.92636 0.93136 0.96323 0.92814 0.93532 0.88346 0.95430 0.77563 0.82405 0.84530 0.84443 0.84953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.05 37.16 0.34 -1.34 16 2 C -0.09 -1.35 2.48 -90.58 -0.22 -1.58 16 3 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 4 C -0.13 -1.84 5.20 -26.61 -0.14 -1.98 16 5 C 0.14 2.65 6.51 -3.72 -0.02 2.62 16 6 N -0.59 -13.52 2.91 -172.32 -0.50 -14.02 16 7 C -0.26 -6.74 9.59 -15.06 -0.14 -6.88 16 8 H 0.06 1.63 7.89 -52.49 -0.41 1.21 16 9 C 0.01 0.27 4.91 -17.43 -0.09 0.18 16 10 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 11 Si 0.89 21.91 29.59 -169.99 -5.03 16.88 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.16 3.63 4.91 -3.71 -0.02 3.61 16 16 C 0.13 2.22 2.24 -67.81 -0.15 2.07 16 17 H 0.08 1.46 7.57 -51.93 -0.39 1.07 16 18 N -0.69 -11.33 4.25 -54.88 -0.23 -11.57 16 19 C 0.58 10.45 7.77 -12.69 -0.10 10.35 16 20 O -0.52 -11.27 16.50 5.24 0.09 -11.18 16 21 C 0.05 0.74 6.97 -82.30 -0.57 0.17 16 22 C -0.12 -1.83 10.53 -39.15 -0.41 -2.24 16 23 C -0.09 -1.23 6.16 -106.93 -0.66 -1.88 16 24 C -0.10 -1.21 10.03 -39.46 -0.40 -1.60 16 25 C 0.07 0.78 7.24 -39.84 -0.29 0.49 16 26 F -0.15 -1.75 17.25 2.25 0.04 -1.71 16 27 C -0.13 -1.29 9.99 -39.46 -0.39 -1.69 16 28 C -0.10 -0.97 10.07 -39.43 -0.40 -1.37 16 29 C 0.10 1.23 7.25 -83.94 -0.61 0.62 16 30 N -0.57 -7.14 6.08 -7.34 -0.04 -7.18 16 31 H 0.42 4.17 8.12 -40.82 -0.33 3.84 16 32 H 0.05 0.54 7.54 -51.93 -0.39 0.15 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.70 6.40 -51.93 -0.33 0.36 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 1.00 7.94 -51.93 -0.41 0.58 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.10 2.68 6.03 -51.93 -0.31 2.37 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 5.53 5.70 -40.82 -0.23 5.30 16 43 H 0.16 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 376.57 15.07 5.67 5.67 Total: -1.00 -31.50 376.57 -9.85 -41.35 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.18 Total: 7.49 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -4.28 Total: -0.46 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -0.16 Total: -58.05 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.50 -9.85 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967655708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.337 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds