Wall clock time and date at job start Wed Apr 1 2020 05:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.45867 * 2 1 4 4 C 1.53042 * 109.46221 * 119.95636 * 2 1 3 5 5 C 1.53188 * 109.31428 * 181.38971 * 4 2 1 6 6 N 1.46920 * 108.77450 * 305.36356 * 5 4 2 7 7 C 1.36935 * 120.63245 * 233.63229 * 6 5 4 8 8 H 1.08001 * 120.00330 * 27.67147 * 7 6 5 9 9 C 1.38811 * 120.00409 * 207.66920 * 7 6 5 10 10 N 1.31627 * 119.99625 * 17.36198 * 9 7 6 11 11 Si 1.86796 * 120.00488 * 197.35964 * 9 7 6 12 12 H 1.48501 * 109.47123 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47001 * 120.00301 * 11 9 7 14 14 H 1.48503 * 109.47553 * 240.00063 * 11 9 7 15 15 C 1.46926 * 118.74108 * 53.61012 * 6 5 4 16 16 C 1.53034 * 109.46184 * 240.02664 * 2 1 3 17 17 H 1.09000 * 109.50001 * 58.62637 * 16 2 1 18 18 N 1.46507 * 109.49931 * 298.56271 * 16 2 1 19 19 C 1.34771 * 119.99843 * 154.99996 * 18 16 2 20 20 O 1.21641 * 120.00335 * 359.97438 * 19 18 16 21 21 C 1.47060 * 119.99468 * 180.02562 * 19 18 16 22 22 C 1.35878 * 125.42581 * 180.02562 * 21 19 18 23 23 C 1.41586 * 107.73774 * 179.97438 * 22 21 19 24 24 C 1.40124 * 133.34743 * 180.02562 * 23 22 21 25 25 C 1.36611 * 119.81369 * 179.97438 * 24 23 22 26 26 F 1.35102 * 119.71994 * 180.02562 * 25 24 23 27 27 C 1.39128 * 120.56224 * 359.97438 * 25 24 23 28 28 C 1.37665 * 120.62578 * 0.02562 * 27 25 24 29 29 C 1.39213 * 119.84072 * 0.27633 * 28 27 25 30 30 N 1.37579 * 133.15036 * 180.44707 * 29 28 27 31 31 H 0.96999 * 125.60761 * 359.24448 * 30 29 28 32 32 H 1.08998 * 109.46726 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47127 * 299.97162 * 1 2 3 34 34 H 1.08991 * 109.47318 * 59.97681 * 1 2 3 35 35 H 1.09006 * 109.49611 * 301.33971 * 4 2 1 36 36 H 1.08997 * 109.49502 * 61.43194 * 4 2 1 37 37 H 1.08996 * 109.58826 * 65.15267 * 5 4 2 38 38 H 1.09004 * 109.58572 * 185.43729 * 5 4 2 39 39 H 0.96999 * 120.00001 * 179.97438 * 10 9 7 40 40 H 1.08994 * 109.59151 * 186.60623 * 15 6 5 41 41 H 1.09002 * 109.58599 * 66.17293 * 15 6 5 42 42 H 0.97001 * 119.99506 * 335.00600 * 18 16 2 43 43 H 1.07994 * 126.13413 * 359.93103 * 22 21 19 44 44 H 1.08003 * 120.09241 * 359.97438 * 24 23 22 45 45 H 1.07996 * 119.68752 * 179.97438 * 27 25 24 46 46 H 1.07994 * 120.07751 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7205 1.2502 5 6 3.5714 -0.6883 1.2644 6 7 4.0679 -1.2487 0.0003 7 6 4.9758 -2.2738 0.0004 8 1 5.0086 -2.9660 0.8288 9 6 5.8541 -2.4233 -1.0641 10 7 6.0604 -1.4216 -1.8926 11 14 6.7431 -4.0460 -1.3207 12 1 6.3401 -5.0043 -0.2603 13 1 6.3858 -4.6012 -2.6509 14 1 8.2098 -3.8227 -1.2553 15 6 3.5715 -0.6887 -1.2641 16 6 2.0399 -0.7209 -1.2499 17 1 1.6568 -0.2214 -2.1398 18 7 1.5802 -2.1119 -1.2339 19 6 1.4518 -2.7924 -2.3901 20 8 1.7170 -2.2516 -3.4469 21 6 0.9898 -4.1885 -2.3740 22 6 0.8218 -4.9752 -3.4690 23 6 0.3678 -6.2408 -3.0254 24 6 0.0321 -7.4288 -3.6883 25 6 -0.3847 -8.5132 -2.9696 26 9 -0.7075 -9.6578 -3.6107 27 6 -0.4786 -8.4493 -1.5830 28 6 -0.1539 -7.2926 -0.9107 29 6 0.2673 -6.1727 -1.6223 30 7 0.6580 -4.9092 -1.2433 31 1 0.6916 -4.5779 -0.3322 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8903 34 1 -0.3633 0.5141 -0.8897 35 1 1.6572 -0.2203 2.1399 36 1 1.6979 -1.7554 1.2386 37 1 3.9143 0.3412 1.3674 38 1 3.9417 -1.2820 2.1002 39 1 6.6744 -1.5259 -2.6363 40 1 3.9417 -1.2847 -2.0981 41 1 3.9143 0.3409 -1.3673 42 1 1.3683 -2.5429 -0.3912 43 1 1.0015 -4.6866 -4.4941 44 1 0.1026 -7.4869 -4.7645 45 1 -0.8101 -9.3149 -1.0288 46 1 -0.2296 -7.2530 0.1659 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967655708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:43 Heat of formation + Delta-G solvation = -22.751466 kcal Electronic energy + Delta-G solvation = -30765.524440 eV Core-core repulsion = 26569.542256 eV Total energy + Delta-G solvation = -4195.982184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.79514 -42.68065 -40.96996 -39.12556 -37.53419 -35.98720 -34.46260 -33.31242 -32.85589 -31.26476 -30.14884 -29.89547 -28.90814 -26.06000 -25.27428 -23.72603 -23.29744 -22.77060 -22.50127 -21.31499 -20.37515 -19.74459 -18.75733 -18.38707 -17.97237 -16.97205 -16.84965 -16.71358 -16.55287 -16.17584 -15.83212 -15.62860 -15.23518 -15.14277 -14.94525 -14.90183 -14.67074 -14.51381 -14.27400 -14.10299 -14.07848 -13.63445 -13.56054 -13.17799 -13.01787 -12.78469 -12.66115 -12.51946 -12.28932 -12.22377 -11.98408 -11.96263 -11.58499 -11.40674 -11.18358 -11.09299 -11.05414 -10.57160 -10.10813 -9.24913 -8.90761 -8.66535 -7.88841 -5.32745 -0.39785 0.35718 0.98593 1.36785 1.41307 1.47959 1.77243 2.09646 2.32767 2.45869 2.66089 3.27677 3.29350 3.56966 3.65874 3.70635 3.86249 3.95627 3.97146 4.08247 4.10552 4.27914 4.31098 4.49399 4.58145 4.65504 4.69622 4.78614 4.82457 4.87018 4.94748 4.96358 5.06548 5.16103 5.16988 5.18265 5.22641 5.24499 5.39360 5.44748 5.47619 5.50402 5.57471 5.65411 5.71042 5.93016 6.32275 6.37164 6.54273 7.12753 7.13978 7.86282 8.36359 9.16162 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010458 B = 0.003774 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.636363 B = 7417.591578 C = 8784.442039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.115 4.115 5 C 0.134 3.866 6 N -0.599 5.599 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.047 4.047 10 N -0.932 5.932 11 Si 0.947 3.053 12 H -0.260 1.260 13 H -0.304 1.304 14 H -0.292 1.292 15 C 0.169 3.831 16 C 0.137 3.863 17 H 0.069 0.931 18 N -0.679 5.679 19 C 0.575 3.425 20 O -0.570 6.570 21 C 0.026 3.974 22 C -0.130 4.130 23 C -0.113 4.113 24 C -0.109 4.109 25 C 0.060 3.940 26 F -0.148 7.148 27 C -0.117 4.117 28 C -0.089 4.089 29 C 0.098 3.902 30 N -0.557 5.557 31 H 0.432 0.568 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.013 0.987 38 H 0.058 0.942 39 H 0.245 0.755 40 H 0.049 0.951 41 H 0.000 1.000 42 H 0.404 0.596 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.170 0.830 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.281 -8.304 7.073 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.154 4.154 5 C 0.009 3.991 6 N -0.323 5.323 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.243 4.243 10 N -0.578 5.578 11 Si 0.776 3.224 12 H -0.184 1.184 13 H -0.232 1.232 14 H -0.219 1.219 15 C 0.042 3.958 16 C 0.031 3.969 17 H 0.087 0.913 18 N -0.329 5.329 19 C 0.362 3.638 20 O -0.449 6.449 21 C -0.085 4.085 22 C -0.157 4.157 23 C -0.118 4.118 24 C -0.129 4.129 25 C 0.040 3.960 26 F -0.127 7.127 27 C -0.137 4.137 28 C -0.109 4.109 29 C -0.013 4.013 30 N -0.162 5.162 31 H 0.273 0.727 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.018 0.982 42 H 0.240 0.760 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.187 0.813 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.953 -7.798 6.378 20.587 hybrid contribution 1.295 -0.582 -0.405 1.476 sum -16.658 -8.380 5.973 19.581 Atomic orbital electron populations 1.21769 0.92981 1.02135 1.02405 1.21289 0.96879 0.99295 0.93199 0.90323 1.21965 0.95512 1.00421 0.97528 1.21162 0.93771 0.95982 0.88149 1.44179 1.48069 1.39406 1.00633 1.19437 1.09337 1.03494 1.05511 0.91104 1.25634 0.98746 0.99453 1.00422 1.70161 1.38623 1.30654 1.18367 0.85509 0.78150 0.81421 0.77289 1.18422 1.23195 1.21926 1.20895 0.89943 0.95240 0.89721 1.21574 0.95335 0.80928 0.99111 0.91327 1.45568 1.65647 1.13938 1.07763 1.17437 0.77527 0.84392 0.84473 1.90809 1.52558 1.69364 1.32212 1.20048 1.08098 0.92600 0.87712 1.20970 1.03910 0.92128 0.98663 1.17954 1.06391 0.94333 0.93107 1.20392 1.00553 0.90783 1.01175 1.17208 1.04871 0.82495 0.91422 1.91476 1.90900 1.48053 1.82262 1.21169 1.01216 0.99695 0.91654 1.20286 1.00597 0.88771 1.01255 1.18645 1.02043 0.86862 0.93783 1.41812 1.56286 1.09768 1.08378 0.72664 0.92530 0.90433 0.93146 0.88905 0.91865 0.96921 0.92349 0.94616 0.93275 0.98249 0.75950 0.83217 0.83924 0.81273 0.81295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.05 71.98 0.65 -2.01 16 2 C -0.09 -2.31 2.48 -10.77 -0.03 -2.34 16 3 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 4 C -0.12 -2.90 5.20 30.67 0.16 -2.74 16 5 C 0.13 4.80 6.51 86.36 0.56 5.36 16 6 N -0.60 -27.76 2.91 -699.11 -2.04 -29.80 16 7 C -0.25 -12.97 9.59 84.03 0.81 -12.16 16 8 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 9 C -0.05 -2.64 4.91 84.86 0.42 -2.22 16 10 N -0.93 -56.74 11.19 21.65 0.24 -56.50 16 11 Si 0.95 46.10 29.59 68.60 2.03 48.12 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 14 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 15 C 0.17 8.06 4.91 86.36 0.42 8.48 16 16 C 0.14 4.87 2.24 45.07 0.10 4.97 16 17 H 0.07 2.62 7.57 -2.39 -0.02 2.60 16 18 N -0.68 -22.04 4.25 -445.77 -1.89 -23.93 16 19 C 0.58 21.42 7.77 86.56 0.67 22.09 16 20 O -0.57 -26.19 16.50 -4.16 -0.07 -26.26 16 21 C 0.03 0.82 6.97 39.92 0.28 1.10 16 22 C -0.13 -4.02 10.53 22.55 0.24 -3.79 16 23 C -0.11 -3.01 6.16 -21.36 -0.13 -3.15 16 24 C -0.11 -2.58 10.03 22.35 0.22 -2.35 16 25 C 0.06 1.27 7.24 22.10 0.16 1.43 16 26 F -0.15 -3.26 17.25 44.97 0.78 -2.48 16 27 C -0.12 -1.89 9.99 22.35 0.22 -1.67 16 28 C -0.09 -1.43 10.07 22.37 0.23 -1.20 16 29 C 0.10 2.21 7.25 39.11 0.28 2.49 16 30 N -0.56 -12.90 6.08 -177.14 -1.08 -13.98 16 31 H 0.43 7.33 8.12 -92.71 -0.75 6.58 16 32 H 0.06 1.04 7.54 -2.39 -0.02 1.02 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.06 1.46 6.40 -2.39 -0.02 1.44 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 2.02 7.94 -2.38 -0.02 2.00 16 39 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 40 H 0.05 2.85 6.03 -2.39 -0.01 2.83 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.40 10.63 5.70 -92.71 -0.53 10.10 16 43 H 0.15 4.68 8.06 -2.91 -0.02 4.66 16 44 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 45 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 46 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.49 376.57 2.99 -70.50 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -0.25 Total: 22.02 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 5.27 Total: 12.30 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -4.76 Total: -124.20 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.07 Total: -26.26 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.78 Total: -2.48 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -73.49 2.99 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967655708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.747 kcal (2) G-P(sol) polarization free energy of solvation -73.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds