Wall clock time and date at job start Wed Apr 1 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.45211 * 2 1 4 4 C 1.53042 * 109.45996 * 119.96208 * 2 1 3 5 5 C 1.53189 * 109.31559 * 181.38817 * 4 2 1 6 6 N 1.46932 * 108.77328 * 305.36333 * 5 4 2 7 7 C 1.36933 * 120.63277 * 233.58554 * 6 5 4 8 8 H 1.07995 * 120.00560 * 152.67137 * 7 6 5 9 9 C 1.38819 * 119.99704 * 332.94837 * 7 6 5 10 10 N 1.31621 * 119.99889 * 159.01605 * 9 7 6 11 11 Si 1.86793 * 120.00166 * 339.01590 * 9 7 6 12 12 H 1.48498 * 109.47408 * 93.11402 * 11 9 7 13 13 H 1.48498 * 109.47421 * 213.11670 * 11 9 7 14 14 H 1.48510 * 109.47320 * 333.11387 * 11 9 7 15 15 C 1.46926 * 118.73546 * 53.86349 * 6 5 4 16 16 C 1.53038 * 109.46235 * 240.03122 * 2 1 3 17 17 H 1.09001 * 109.49925 * 298.59533 * 16 2 1 18 18 N 1.46496 * 109.50030 * 58.66489 * 16 2 1 19 19 C 1.34776 * 119.99989 * 205.00517 * 18 16 2 20 20 O 1.21644 * 120.00321 * 359.97438 * 19 18 16 21 21 C 1.47063 * 119.99498 * 179.97438 * 19 18 16 22 22 C 1.35875 * 125.42302 * 179.97438 * 21 19 18 23 23 C 1.41587 * 107.73733 * 179.97438 * 22 21 19 24 24 C 1.40126 * 133.34651 * 180.02562 * 23 22 21 25 25 C 1.36618 * 119.81016 * 180.02562 * 24 23 22 26 26 F 1.35095 * 119.72255 * 180.02562 * 25 24 23 27 27 C 1.39134 * 120.56098 * 359.96322 * 25 24 23 28 28 C 1.37657 * 120.62607 * 0.02562 * 27 25 24 29 29 C 1.39222 * 119.84436 * 0.02562 * 28 27 25 30 30 N 1.37573 * 133.15087 * 180.31831 * 29 28 27 31 31 H 0.97000 * 125.61146 * 359.96311 * 30 29 28 32 32 H 1.08996 * 109.47385 * 300.03937 * 1 2 3 33 33 H 1.08999 * 109.46801 * 60.03797 * 1 2 3 34 34 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 35 35 H 1.09003 * 109.49677 * 61.43440 * 4 2 1 36 36 H 1.09004 * 109.49884 * 301.33639 * 4 2 1 37 37 H 1.09005 * 109.59140 * 185.58219 * 5 4 2 38 38 H 1.08997 * 109.58961 * 65.15270 * 5 4 2 39 39 H 0.96996 * 120.00187 * 179.97438 * 10 9 7 40 40 H 1.08999 * 109.58782 * 65.92640 * 15 6 5 41 41 H 1.09007 * 109.58094 * 186.35251 * 15 6 5 42 42 H 0.97001 * 119.99614 * 24.99773 * 18 16 2 43 43 H 1.08003 * 126.13455 * 359.97433 * 22 21 19 44 44 H 1.07995 * 120.09729 * 359.97438 * 24 23 22 45 45 H 1.07996 * 119.68420 * 179.97438 * 27 25 24 46 46 H 1.08000 * 120.07808 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6885 1.2644 6 7 4.0679 -1.2489 0.0002 7 6 4.9764 -2.2734 0.0002 8 1 5.0134 -2.9625 -0.8305 9 6 5.8461 -2.4296 1.0708 10 7 6.4169 -3.5952 1.2903 11 14 6.2064 -0.9859 2.2000 12 1 5.2764 -1.0183 3.3572 13 1 7.6062 -1.0759 2.6873 14 1 6.0231 0.2845 1.4530 15 6 3.5757 -0.6848 -1.2641 16 6 2.0399 -0.7208 -1.2500 17 1 1.6974 -1.7555 -1.2385 18 7 1.5257 -0.0488 -2.4459 19 6 1.3972 -0.7325 -3.6003 20 8 1.7086 -1.9074 -3.6493 21 6 0.8805 -0.0580 -4.8006 22 6 0.7069 -0.6383 -6.0169 23 6 0.1924 0.3460 -6.8950 24 6 -0.1758 0.3311 -8.2469 25 6 -0.6522 1.4691 -8.8337 26 9 -1.0072 1.4526 -10.1371 27 6 -0.7762 2.6448 -8.1000 28 6 -0.4208 2.6826 -6.7707 29 6 0.0682 1.5356 -6.1514 30 7 0.4900 1.2651 -4.8701 31 1 0.5106 1.8995 -4.1365 32 1 -0.3634 0.5144 0.8896 33 1 -0.3633 0.5132 -0.8903 34 1 -0.3633 -1.0276 0.0005 35 1 1.6978 -1.7556 1.2384 36 1 1.6572 -0.2206 2.1399 37 1 3.9417 -1.2844 2.0986 38 1 3.9142 0.3410 1.3675 39 1 7.0249 -3.7043 2.0382 40 1 3.9189 0.3449 -1.3630 41 1 3.9488 -1.2785 -2.0987 42 1 1.2776 0.8881 -2.4069 43 1 0.9228 -1.6661 -6.2688 44 1 -0.0825 -0.5772 -8.8236 45 1 -1.1540 3.5363 -8.5783 46 1 -0.5210 3.5998 -6.2095 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967655710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:47 Heat of formation + Delta-G solvation = -22.002566 kcal Electronic energy + Delta-G solvation = -29647.950692 eV Core-core repulsion = 25452.000983 eV Total energy + Delta-G solvation = -4195.949709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.79026 -42.70597 -40.99936 -39.36448 -37.55548 -36.37762 -34.66941 -33.43187 -33.31622 -31.38018 -30.15502 -29.93794 -29.15005 -26.08181 -25.28155 -23.91667 -23.26322 -22.93720 -22.35811 -21.50493 -21.00311 -19.60805 -18.83734 -18.49376 -17.94632 -17.36372 -17.00543 -16.76761 -16.67207 -16.43252 -15.84322 -15.71983 -15.35459 -15.25925 -15.01652 -14.94258 -14.79397 -14.66613 -14.43053 -14.22323 -14.09552 -13.77680 -13.61584 -13.57952 -13.31706 -12.72911 -12.65812 -12.52970 -12.29489 -12.22591 -11.97642 -11.81944 -11.64729 -11.51444 -11.33573 -11.22793 -11.05646 -10.81365 -10.30595 -9.27238 -8.96063 -8.89333 -8.18690 -5.52759 -0.42337 0.35539 0.94543 1.28899 1.41006 1.51076 1.70887 1.95199 2.19259 2.39971 2.66215 3.03059 3.25970 3.35432 3.57514 3.63752 3.71057 3.88666 3.95349 3.96975 4.08123 4.25803 4.28583 4.31786 4.38367 4.49609 4.55033 4.58055 4.79958 4.81889 4.83470 4.92223 4.96129 4.97175 5.01365 5.08582 5.12663 5.17335 5.20155 5.26671 5.37189 5.38948 5.48631 5.53780 5.82880 5.92705 6.09430 6.30361 6.46971 6.87584 7.03758 7.58203 7.95421 9.01608 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002259 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.180702 B =12394.248537 C =12938.395511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.083 4.083 3 H 0.097 0.903 4 C -0.121 4.121 5 C 0.113 3.887 6 N -0.616 5.616 7 C -0.256 4.256 8 H 0.036 0.964 9 C -0.038 4.038 10 N -0.959 5.959 11 Si 0.959 3.041 12 H -0.267 1.267 13 H -0.312 1.312 14 H -0.255 1.255 15 C 0.143 3.857 16 C 0.146 3.854 17 H 0.058 0.942 18 N -0.696 5.696 19 C 0.580 3.420 20 O -0.564 6.564 21 C 0.027 3.973 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.110 4.110 25 C 0.058 3.942 26 F -0.150 7.150 27 C -0.118 4.118 28 C -0.087 4.087 29 C 0.102 3.898 30 N -0.554 5.554 31 H 0.436 0.564 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.413 0.587 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.167 0.833 46 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 20.904 -12.775 31.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.102 4.102 3 H 0.115 0.885 4 C -0.160 4.160 5 C -0.011 4.011 6 N -0.341 5.341 7 C -0.385 4.385 8 H 0.054 0.946 9 C -0.233 4.233 10 N -0.605 5.605 11 Si 0.786 3.214 12 H -0.193 1.193 13 H -0.241 1.241 14 H -0.179 1.179 15 C 0.017 3.983 16 C 0.040 3.960 17 H 0.076 0.924 18 N -0.348 5.348 19 C 0.366 3.634 20 O -0.442 6.442 21 C -0.084 4.084 22 C -0.151 4.151 23 C -0.119 4.119 24 C -0.130 4.130 25 C 0.038 3.962 26 F -0.129 7.129 27 C -0.138 4.138 28 C -0.107 4.107 29 C -0.009 4.009 30 N -0.161 5.161 31 H 0.278 0.722 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.251 0.749 43 H 0.167 0.833 44 H 0.159 0.841 45 H 0.185 0.815 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -19.761 20.043 -12.572 30.826 hybrid contribution 0.876 -0.092 0.474 1.001 sum -18.885 19.951 -12.097 30.017 Atomic orbital electron populations 1.21790 0.92768 1.01768 1.03151 1.21284 0.97138 0.99914 0.91870 0.88476 1.22005 0.94824 1.00639 0.98567 1.21561 0.94854 0.96887 0.87807 1.44347 1.48456 1.39848 1.01437 1.18769 1.10981 1.02985 1.05804 0.94620 1.26011 0.97514 0.99276 1.00487 1.70004 1.34295 1.24220 1.31960 0.85737 0.75671 0.81018 0.78934 1.19289 1.24110 1.17949 1.21387 0.92770 0.96711 0.87467 1.21450 0.93647 0.96696 0.84209 0.92404 1.45661 1.65245 1.14737 1.09137 1.17479 0.77582 0.85800 0.82500 1.90907 1.51326 1.17399 1.84528 1.19830 1.08047 0.85289 0.95259 1.21006 1.02966 1.00125 0.91022 1.17949 1.06073 0.94024 0.93894 1.20412 1.00191 0.98729 0.93633 1.17271 1.04260 0.95740 0.78899 1.91478 1.90172 1.97280 1.33967 1.21189 1.01189 0.97581 0.93870 1.20282 0.99929 0.96518 0.94015 1.18569 1.01509 0.96155 0.84664 1.41750 1.54870 1.09079 1.10355 0.72167 0.90371 0.91167 0.94128 0.93384 0.88402 0.93230 0.93658 0.92831 0.93650 0.94987 0.74918 0.83290 0.84116 0.81523 0.81072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.02 71.98 0.65 -1.71 16 2 C -0.08 -1.94 2.27 -10.77 -0.02 -1.96 16 3 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 4 C -0.12 -3.59 5.36 30.67 0.16 -3.42 16 5 C 0.11 4.48 4.20 86.36 0.36 4.85 16 6 N -0.62 -29.25 2.77 -698.23 -1.93 -31.18 16 7 C -0.26 -15.19 10.03 84.04 0.84 -14.35 16 8 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 9 C -0.04 -2.29 5.23 84.86 0.44 -1.85 16 10 N -0.96 -61.97 13.97 21.65 0.30 -61.67 16 11 Si 0.96 46.17 24.35 68.60 1.67 47.84 16 12 H -0.27 -11.82 6.62 99.48 0.66 -11.16 16 13 H -0.31 -15.38 7.11 99.48 0.71 -14.67 16 14 H -0.26 -11.48 6.64 99.48 0.66 -10.82 16 15 C 0.14 5.67 6.12 86.51 0.53 6.20 16 16 C 0.15 4.48 2.08 45.22 0.09 4.57 16 17 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 18 N -0.70 -15.66 4.36 -445.09 -1.94 -17.60 16 19 C 0.58 16.26 7.77 86.56 0.67 16.94 16 20 O -0.56 -22.22 16.50 -4.17 -0.07 -22.29 16 21 C 0.03 0.58 6.97 39.92 0.28 0.86 16 22 C -0.12 -2.90 10.53 22.55 0.24 -2.66 16 23 C -0.11 -2.27 6.16 -21.36 -0.13 -2.40 16 24 C -0.11 -2.01 10.03 22.35 0.22 -1.78 16 25 C 0.06 0.96 7.24 22.11 0.16 1.12 16 26 F -0.15 -2.75 17.25 44.97 0.78 -1.98 16 27 C -0.12 -1.30 9.99 22.35 0.22 -1.07 16 28 C -0.09 -0.83 10.07 22.37 0.23 -0.60 16 29 C 0.10 1.52 7.25 39.11 0.28 1.81 16 30 N -0.55 -7.42 6.08 -177.14 -1.08 -8.50 16 31 H 0.44 2.49 8.12 -92.71 -0.75 1.73 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 0.91 7.36 -2.39 -0.02 0.89 16 34 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.05 2.22 4.48 -2.38 -0.01 2.21 16 38 H 0.05 1.64 7.09 -2.39 -0.02 1.62 16 39 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.03 1.47 7.93 -2.38 -0.02 1.45 16 42 H 0.41 5.36 7.36 -92.71 -0.68 4.68 16 43 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 46 H 0.17 0.35 8.06 -2.91 -0.02 0.32 16 Total: -1.00 -81.36 373.33 2.47 -78.89 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.50 Total: 11.97 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 5.24 Total: 4.51 kcal Atomic # 7 Polarization: -114.30 SS G_CDS: -4.65 Total: -118.94 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.07 Total: -22.29 kcal Atomic # 9 Polarization: -2.75 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.67 Total: 47.84 kcal Total: -81.36 2.47 -78.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967655710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.892 kcal (2) G-P(sol) polarization free energy of solvation -81.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds