Wall clock time and date at job start Wed Apr 1 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.44835 * 2 1 4 4 C 1.53038 * 109.46168 * 119.96586 * 2 1 3 5 5 C 1.53192 * 109.31446 * 181.38675 * 4 2 1 6 6 N 1.46924 * 108.77232 * 305.36933 * 5 4 2 7 7 C 1.36942 * 120.62880 * 233.60667 * 6 5 4 8 8 H 1.08002 * 119.99616 * 27.67736 * 7 6 5 9 9 C 1.38809 * 120.00208 * 207.67891 * 7 6 5 10 10 N 1.31615 * 120.00038 * 17.36544 * 9 7 6 11 11 Si 1.86804 * 119.99902 * 197.36285 * 9 7 6 12 12 H 1.48499 * 109.47237 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47084 * 120.00146 * 11 9 7 14 14 H 1.48505 * 109.47029 * 240.00028 * 11 9 7 15 15 C 1.46927 * 118.76985 * 53.58539 * 6 5 4 16 16 C 1.53036 * 109.46177 * 240.03863 * 2 1 3 17 17 H 1.09003 * 109.49524 * 298.59891 * 16 2 1 18 18 N 1.46497 * 109.50124 * 58.65788 * 16 2 1 19 19 C 1.34776 * 120.00253 * 204.66276 * 18 16 2 20 20 O 1.21558 * 120.00265 * 0.27778 * 19 18 16 21 21 C 1.47854 * 120.00025 * 180.27732 * 19 18 16 22 22 C 1.39721 * 119.43870 * 179.72735 * 21 19 18 23 23 C 1.37003 * 119.59070 * 179.76373 * 22 21 19 24 24 C 1.39887 * 118.37125 * 0.49733 * 23 22 21 25 25 N 1.35420 * 133.68958 * 179.74491 * 24 23 22 26 26 C 1.30932 * 109.57589 * 180.02562 * 25 24 23 27 27 O 1.35173 * 124.99974 * 179.97438 * 26 25 24 28 28 N 1.36392 * 110.00155 * 0.02562 * 26 25 24 29 29 H 0.96994 * 126.31761 * 180.02562 * 28 26 25 30 30 C 1.38252 * 107.35839 * 0.02562 * 28 26 25 31 31 N 1.31773 * 133.71148 * 180.02562 * 30 28 26 32 32 H 1.08994 * 109.46865 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47150 * 299.96524 * 1 2 3 34 34 H 1.08999 * 109.47159 * 59.96272 * 1 2 3 35 35 H 1.08995 * 109.49568 * 301.34053 * 4 2 1 36 36 H 1.08997 * 109.49454 * 61.43458 * 4 2 1 37 37 H 1.09002 * 109.58490 * 65.14901 * 5 4 2 38 38 H 1.08995 * 109.58555 * 185.43667 * 5 4 2 39 39 H 0.96999 * 120.00178 * 179.97438 * 10 9 7 40 40 H 1.09000 * 109.61709 * 186.63916 * 15 6 5 41 41 H 1.09003 * 109.56419 * 66.21398 * 15 6 5 42 42 H 0.97000 * 119.99909 * 24.93936 * 18 16 2 43 43 H 1.08002 * 120.19975 * 359.97438 * 22 21 19 44 44 H 1.08006 * 120.81075 * 180.22650 * 23 22 21 45 45 H 0.96699 * 114.00169 * 270.02428 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5715 -0.6885 1.2642 6 7 4.0679 -1.2487 -0.0001 7 6 4.9762 -2.2735 -0.0001 8 1 5.0092 -2.9658 0.8282 9 6 5.8544 -2.4226 -1.0647 10 7 6.0605 -1.4208 -1.8930 11 14 6.7438 -4.0451 -1.3216 12 1 6.3411 -5.0037 -0.2614 13 1 6.3866 -4.6002 -2.6519 14 1 8.2105 -3.8213 -1.2563 15 6 3.5714 -0.6892 -1.2647 16 6 2.0399 -0.7206 -1.2501 17 1 1.6974 -1.7554 -1.2387 18 7 1.5256 -0.0486 -2.4459 19 6 1.4036 -0.7303 -3.6021 20 8 1.7156 -1.9042 -3.6515 21 6 0.8903 -0.0504 -4.8106 22 6 0.7740 -0.7669 -6.0045 23 6 0.2942 -0.1413 -7.1249 24 6 -0.0557 1.2100 -7.0333 25 7 -0.5431 2.1121 -7.9180 26 6 -0.7030 3.2676 -7.3232 27 8 -1.1721 4.3872 -7.9177 28 7 -0.3255 3.1755 -6.0158 29 1 -0.3471 3.8897 -5.3599 30 6 0.0937 1.8761 -5.7980 31 7 0.5553 1.2326 -4.7448 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5133 0.8903 34 1 -0.3633 0.5144 -0.8896 35 1 1.6573 -0.2207 2.1398 36 1 1.6979 -1.7556 1.2382 37 1 3.9143 0.3410 1.3673 38 1 3.9417 -1.2824 2.0999 39 1 6.6744 -1.5248 -2.6367 40 1 3.9413 -1.2854 -2.0988 41 1 3.9147 0.3402 -1.3681 42 1 1.2767 0.8881 -2.4066 43 1 1.0574 -1.8083 -6.0429 44 1 0.1927 -0.6772 -8.0571 45 1 -0.4843 4.9408 -8.3122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968034998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:17 Heat of formation + Delta-G solvation = 10.361070 kcal Electronic energy + Delta-G solvation = -30243.388572 eV Core-core repulsion = 26068.762217 eV Total energy + Delta-G solvation = -4174.626355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.56232 -41.32228 -39.91977 -39.00643 -37.83908 -36.12953 -35.08459 -34.61525 -32.84627 -32.49296 -31.26933 -30.01161 -28.95155 -26.10938 -25.61297 -24.62171 -23.67314 -22.92695 -22.66245 -21.75233 -21.06117 -20.38402 -19.38551 -18.78285 -18.61840 -18.47138 -17.27804 -17.11097 -16.75315 -16.25019 -16.12499 -15.71873 -15.59613 -15.30890 -15.17838 -14.92238 -14.51376 -14.41395 -14.31900 -14.06445 -13.54423 -13.38002 -13.24754 -13.22797 -13.05251 -12.74956 -12.56379 -12.47685 -12.31767 -12.26844 -12.13751 -11.89160 -11.63261 -11.57102 -11.20377 -11.16357 -10.54988 -10.49672 -10.16137 -10.12343 -9.61796 -8.68589 -7.87893 -5.33485 -0.81699 0.01588 0.89680 1.18535 1.42460 1.47095 1.55662 1.79165 2.02963 2.40331 2.50939 2.69915 3.03174 3.27170 3.31468 3.68812 3.74494 3.81093 3.87470 3.88935 4.00911 4.17058 4.46823 4.48979 4.50521 4.59060 4.66549 4.74197 4.85591 4.89507 4.92646 4.98828 5.12606 5.18023 5.21239 5.28435 5.30554 5.42724 5.45087 5.54215 5.62770 5.65361 5.78324 6.23860 6.36520 6.38114 6.54138 6.65380 7.11623 7.18826 7.85678 8.35207 9.17181 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013386 B = 0.002932 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.162436 B = 9548.839777 C =10778.999826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.085 4.085 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.608 5.608 7 C -0.262 4.262 8 H 0.069 0.931 9 C -0.051 4.051 10 N -0.931 5.931 11 Si 0.962 3.038 12 H -0.263 1.263 13 H -0.296 1.296 14 H -0.288 1.288 15 C 0.180 3.820 16 C 0.138 3.862 17 H 0.058 0.942 18 N -0.686 5.686 19 C 0.565 3.435 20 O -0.564 6.564 21 C 0.108 3.892 22 C -0.120 4.120 23 C -0.020 4.020 24 C 0.029 3.971 25 N -0.509 5.509 26 C 0.499 3.501 27 O -0.432 6.432 28 N -0.573 5.573 29 H 0.444 0.556 30 C 0.233 3.767 31 N -0.452 5.452 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.247 0.753 40 H 0.047 0.953 41 H -0.004 1.004 42 H 0.414 0.586 43 H 0.161 0.839 44 H 0.180 0.820 45 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.197 13.626 -8.112 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.154 4.154 5 C 0.010 3.990 6 N -0.332 5.332 7 C -0.392 4.392 8 H 0.087 0.913 9 C -0.246 4.246 10 N -0.577 5.577 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.223 1.223 14 H -0.214 1.214 15 C 0.052 3.948 16 C 0.032 3.968 17 H 0.076 0.924 18 N -0.336 5.336 19 C 0.350 3.650 20 O -0.442 6.442 21 C -0.039 4.039 22 C -0.144 4.144 23 C -0.048 4.048 24 C -0.093 4.093 25 N -0.242 5.242 26 C 0.194 3.806 27 O -0.238 6.238 28 N -0.202 5.202 29 H 0.288 0.712 30 C -0.006 4.006 31 N -0.169 5.169 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.014 0.986 42 H 0.251 0.749 43 H 0.179 0.821 44 H 0.197 0.803 45 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges -17.531 13.013 -8.189 23.318 hybrid contribution 1.407 0.072 -0.171 1.419 sum -16.123 13.085 -8.359 22.385 Atomic orbital electron populations 1.21763 0.93080 1.01781 1.02565 1.21266 0.96866 0.99305 0.92986 0.90567 1.21963 0.95676 1.00360 0.97387 1.21178 0.93590 0.96151 0.88044 1.44244 1.48128 1.39888 1.00950 1.19528 1.09594 1.03883 1.06217 0.91310 1.25788 0.98630 1.00316 0.99907 1.70180 1.38466 1.30769 1.18240 0.85290 0.77765 0.80418 0.77531 1.18744 1.22339 1.21433 1.20779 0.89546 0.94958 0.89476 1.21627 0.94999 0.96134 0.84063 0.92409 1.45757 1.63561 1.15124 1.09170 1.18064 0.77877 0.85790 0.83256 1.90827 1.51387 1.17190 1.84763 1.20700 1.00161 0.88494 0.94504 1.21679 0.98902 1.02713 0.91088 1.20699 0.93990 0.90117 0.99950 1.19913 1.02778 0.95977 0.90637 1.70663 1.23276 0.99460 1.30839 1.20292 0.91864 0.88907 0.79578 1.84808 1.36366 1.30315 1.72320 1.42968 1.54711 1.09659 1.12877 0.71191 1.18596 1.02333 0.87406 0.92270 1.66059 1.11998 1.08434 1.30381 0.93512 0.90308 0.92444 0.88535 0.92822 0.96207 0.92435 0.94425 0.93481 0.98557 0.74856 0.82096 0.80308 0.69297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 9.02 71.98 0.65 -2.54 16 2 C -0.09 -2.61 2.27 -10.77 -0.02 -2.63 16 3 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 4 C -0.11 -3.61 5.36 30.67 0.16 -3.45 16 5 C 0.14 5.51 6.51 86.36 0.56 6.08 16 6 N -0.61 -31.60 3.00 -699.11 -2.09 -33.69 16 7 C -0.26 -15.05 9.59 84.03 0.81 -14.24 16 8 H 0.07 3.82 7.89 -2.91 -0.02 3.80 16 9 C -0.05 -3.00 4.91 84.86 0.42 -2.59 16 10 N -0.93 -58.04 11.19 21.65 0.24 -57.80 16 11 Si 0.96 47.63 29.59 68.60 2.03 49.66 16 12 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 14 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 15 C 0.18 9.15 4.88 86.36 0.42 9.57 16 16 C 0.14 5.48 2.06 45.07 0.09 5.58 16 17 H 0.06 2.63 7.58 -2.39 -0.02 2.61 16 18 N -0.69 -23.92 4.36 -445.04 -1.94 -25.86 16 19 C 0.57 21.28 7.76 86.79 0.67 21.96 16 20 O -0.56 -25.87 15.95 -3.90 -0.06 -25.93 16 21 C 0.11 3.31 6.74 41.91 0.28 3.59 16 22 C -0.12 -3.15 9.55 22.34 0.21 -2.93 16 23 C -0.02 -0.44 10.16 22.38 0.23 -0.21 16 24 C 0.03 0.67 7.24 39.70 0.29 0.96 16 25 N -0.51 -10.86 11.30 -306.04 -3.46 -14.31 16 26 C 0.50 7.48 9.39 179.70 1.69 9.17 16 27 O -0.43 -3.22 13.62 -84.52 -1.15 -4.37 16 28 N -0.57 -8.54 6.25 -307.03 -1.92 -10.46 16 29 H 0.44 3.80 8.96 -92.71 -0.83 2.97 16 30 C 0.23 5.38 8.46 134.00 1.13 6.51 16 31 N -0.45 -12.15 9.54 -181.67 -1.73 -13.89 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.06 1.29 7.36 -2.39 -0.02 1.27 16 35 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 2.28 7.94 -2.39 -0.02 2.27 16 39 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.05 2.86 6.04 -2.39 -0.01 2.85 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.41 12.19 7.61 -92.71 -0.71 11.49 16 43 H 0.16 4.13 7.61 -2.91 -0.02 4.11 16 44 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 45 H 0.44 -1.75 9.06 -74.06 -0.67 -2.42 16 Total: -1.00 -81.94 373.42 -3.62 -85.56 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -1.13 Total: 16.28 kcal Atomic # 6 Polarization: 27.22 SS G_CDS: 7.59 Total: 34.81 kcal Atomic # 7 Polarization: -145.11 SS G_CDS: -10.90 Total: -156.01 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.21 Total: -30.30 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -81.94 -3.62 -85.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968034998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.922 kcal (2) G-P(sol) polarization free energy of solvation -81.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds