Wall clock time and date at job start Wed Apr 1 2020 05:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46476 * 2 1 4 4 C 1.53040 * 109.46197 * 240.03793 * 2 1 3 5 5 C 1.53189 * 109.31364 * 178.61697 * 4 2 1 6 6 N 1.46922 * 108.77878 * 54.63983 * 5 4 2 7 7 C 1.36930 * 120.63295 * 126.36846 * 6 5 4 8 8 H 1.07994 * 120.00236 * 331.83099 * 7 6 5 9 9 C 1.38819 * 119.99911 * 151.83309 * 7 6 5 10 10 N 1.31615 * 120.00149 * 343.08690 * 9 7 6 11 11 Si 1.86799 * 119.99644 * 163.08111 * 9 7 6 12 12 H 1.48499 * 109.46834 * 90.00606 * 11 9 7 13 13 H 1.48504 * 109.46934 * 209.99728 * 11 9 7 14 14 H 1.48497 * 109.47475 * 330.00322 * 11 9 7 15 15 C 1.46926 * 118.73498 * 306.39202 * 6 5 4 16 16 C 1.53042 * 109.45621 * 119.97646 * 2 1 3 17 17 H 1.09002 * 109.49648 * 301.36806 * 16 2 1 18 18 N 1.46501 * 109.50203 * 61.43386 * 16 2 1 19 19 C 1.34772 * 119.99871 * 204.99830 * 18 16 2 20 20 O 1.21637 * 120.00564 * 0.02562 * 19 18 16 21 21 C 1.47205 * 119.99881 * 179.97438 * 19 18 16 22 22 C 1.38848 * 120.90086 * 0.02562 * 21 19 18 23 23 C 1.39936 * 119.42931 * 179.97438 * 22 21 19 24 24 C 1.35010 * 121.27272 * 359.97438 * 23 22 21 25 25 N 1.36259 * 121.58168 * 359.97438 * 24 23 22 26 26 C 1.36365 * 133.88082 * 179.97438 * 25 24 23 27 27 O 1.35714 * 126.33264 * 359.97438 * 26 25 24 28 28 N 1.31106 * 107.33185 * 180.25965 * 26 25 24 29 29 N 1.28689 * 110.31067 * 359.59550 * 28 26 25 30 30 C 1.31476 * 109.67112 * 0.41385 * 29 28 26 31 31 H 1.08998 * 109.46913 * 300.02937 * 1 2 3 32 32 H 1.09004 * 109.46331 * 60.02914 * 1 2 3 33 33 H 1.08994 * 109.47121 * 180.02562 * 1 2 3 34 34 H 1.08996 * 109.50285 * 298.57111 * 4 2 1 35 35 H 1.09005 * 109.49637 * 58.66765 * 4 2 1 36 36 H 1.09003 * 109.58548 * 174.42712 * 5 4 2 37 37 H 1.09000 * 109.58828 * 294.70762 * 5 4 2 38 38 H 0.96998 * 120.00128 * 179.97438 * 10 9 7 39 39 H 1.08995 * 109.58977 * 293.82193 * 15 6 5 40 40 H 1.09001 * 109.58583 * 173.39243 * 15 6 5 41 41 H 0.96996 * 119.99910 * 24.99927 * 18 16 2 42 42 H 1.08004 * 120.28168 * 0.02562 * 22 21 19 43 43 H 1.08001 * 119.36128 * 179.97438 * 23 22 21 44 44 H 1.08001 * 119.21025 * 179.97438 * 24 23 22 45 45 H 0.96700 * 114.00061 * 90.00012 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7206 -1.2501 5 6 3.5714 -0.6885 -1.2642 6 7 4.0679 -1.2490 -0.0001 7 6 4.9757 -2.2741 -0.0002 8 1 5.0031 -2.9711 -0.8247 9 6 5.8609 -2.4175 1.0595 10 7 6.0660 -1.4140 1.8860 11 14 6.7608 -4.0348 1.3124 12 1 8.0451 -4.0082 0.5675 13 1 7.0319 -4.2293 2.7594 14 1 5.9209 -5.1522 0.8114 15 6 3.5714 -0.6889 1.2642 16 6 2.0398 -0.7210 1.2500 17 1 1.6567 -0.2214 2.1398 18 7 1.5801 -2.1119 1.2340 19 6 1.4515 -2.7925 2.3901 20 8 1.7167 -2.2518 3.4470 21 6 0.9890 -4.1899 2.3741 22 6 0.6807 -4.8252 1.1787 23 6 0.2442 -6.1546 1.1992 24 6 0.1174 -6.8328 2.3597 25 7 0.4081 -6.2553 3.5591 26 6 0.3721 -6.6902 4.8511 27 8 -0.0011 -7.9246 5.2738 28 7 0.7587 -5.6933 5.6097 29 7 1.0430 -4.6667 4.8877 30 6 0.8443 -4.9491 3.6191 31 1 -0.3633 0.5143 0.8897 32 1 -0.3632 0.5134 -0.8903 33 1 -0.3633 -1.0276 0.0005 34 1 1.6979 -1.7555 -1.2386 35 1 1.6573 -0.2205 -2.1399 36 1 3.9417 -1.2843 -2.0985 37 1 3.9144 0.3407 -1.3697 38 1 6.6842 -1.5143 2.6267 39 1 3.9142 0.3406 1.3675 40 1 3.9416 -1.2849 2.0983 41 1 1.3682 -2.5430 0.3913 42 1 0.7776 -4.2982 0.2410 43 1 0.0042 -6.6477 0.2687 44 1 -0.2227 -7.8576 2.3368 45 1 0.7268 -8.5591 5.3265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968538042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:59 Heat of formation + Delta-G solvation = 43.103652 kcal Electronic energy + Delta-G solvation = -31446.577254 eV Core-core repulsion = 27273.370723 eV Total energy + Delta-G solvation = -4173.206530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.65700 -41.17713 -39.41193 -38.77165 -38.72940 -35.91531 -35.00580 -34.10467 -32.79814 -32.22569 -30.98500 -29.86582 -28.85441 -26.30487 -25.68196 -24.63188 -24.22755 -23.54151 -22.71687 -22.13232 -20.38307 -20.28593 -19.27571 -18.67442 -18.45343 -18.25821 -17.59115 -16.83995 -16.56403 -16.30503 -16.02459 -15.71274 -15.64944 -15.44577 -14.97789 -14.74021 -14.56600 -14.11612 -14.01722 -13.74009 -13.70830 -13.54249 -13.26916 -13.09439 -12.97575 -12.89651 -12.71780 -12.58125 -12.45100 -12.25355 -12.09951 -11.92591 -11.57512 -11.50828 -11.26606 -11.01907 -10.92306 -10.74565 -10.51753 -9.96848 -9.24658 -8.61644 -7.84437 -5.28844 -0.84755 -0.10425 0.69518 1.37311 1.39980 1.40914 1.48384 1.63564 2.16903 2.48318 2.50899 2.54207 2.98558 3.17804 3.32781 3.58774 3.71929 3.74038 3.80350 3.93173 4.04726 4.17722 4.31470 4.44732 4.57139 4.67964 4.71908 4.72265 4.77996 4.85974 4.88629 4.95682 5.02166 5.13892 5.14727 5.23761 5.30857 5.31941 5.52534 5.56536 5.57081 5.63650 5.74053 5.76228 6.27409 6.41169 6.67395 7.16408 7.29786 7.37371 7.91099 8.42142 9.20581 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010237 B = 0.004465 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.415743 B = 6269.500615 C = 7615.784523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.599 5.599 7 C -0.242 4.242 8 H 0.079 0.921 9 C -0.054 4.054 10 N -0.936 5.936 11 Si 0.947 3.053 12 H -0.280 1.280 13 H -0.315 1.315 14 H -0.260 1.260 15 C 0.171 3.829 16 C 0.140 3.860 17 H 0.058 0.942 18 N -0.675 5.675 19 C 0.552 3.448 20 O -0.572 6.572 21 C -0.135 4.135 22 C 0.000 4.000 23 C -0.133 4.133 24 C 0.091 3.909 25 N -0.406 5.406 26 C 0.327 3.673 27 O -0.418 6.418 28 N -0.291 5.291 29 N -0.311 5.311 30 C 0.224 3.776 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.241 0.759 39 H -0.006 1.006 40 H 0.043 0.957 41 H 0.408 0.592 42 H 0.186 0.814 43 H 0.224 0.776 44 H 0.223 0.777 45 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.433 -13.523 -11.140 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 H 0.092 0.908 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.322 5.322 7 C -0.372 4.372 8 H 0.096 0.904 9 C -0.249 4.249 10 N -0.583 5.583 11 Si 0.777 3.223 12 H -0.206 1.206 13 H -0.243 1.243 14 H -0.184 1.184 15 C 0.044 3.956 16 C 0.033 3.967 17 H 0.076 0.924 18 N -0.328 5.328 19 C 0.339 3.661 20 O -0.452 6.452 21 C -0.142 4.142 22 C -0.025 4.025 23 C -0.154 4.154 24 C -0.030 4.030 25 N -0.099 5.099 26 C 0.025 3.975 27 O -0.221 6.221 28 N -0.139 5.139 29 N -0.156 5.156 30 C -0.030 4.030 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.027 0.973 38 H 0.050 0.950 39 H 0.012 0.988 40 H 0.062 0.938 41 H 0.247 0.753 42 H 0.203 0.797 43 H 0.240 0.760 44 H 0.240 0.760 45 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -18.363 -12.310 -8.752 23.777 hybrid contribution 1.521 -1.381 -0.002 2.054 sum -16.843 -13.691 -8.754 23.404 Atomic orbital electron populations 1.21774 0.92912 1.02472 1.02138 1.21281 0.96956 0.99071 0.93304 0.90832 1.21968 0.95315 1.00823 0.97193 1.21182 0.93942 0.95857 0.88069 1.44183 1.48067 1.39405 1.00552 1.19460 1.08614 1.03339 1.05837 0.90351 1.25726 0.99027 0.99503 1.00634 1.70166 1.38519 1.30968 1.18622 0.85568 0.79362 0.81779 0.75638 1.20631 1.24267 1.18399 1.20841 0.90179 0.94844 0.89772 1.21472 0.95063 0.81331 0.98819 0.92357 1.45421 1.66162 1.13459 1.07712 1.17936 0.78052 0.85741 0.84408 1.90856 1.51531 1.70380 1.32423 1.20108 1.10073 0.94434 0.89594 1.22431 0.88180 0.95456 0.96428 1.21509 1.00931 0.93308 0.99628 1.22869 0.97281 1.01919 0.80947 1.44200 1.44867 1.12301 1.08492 1.21704 1.05648 0.91362 0.78769 1.84981 1.37884 1.14662 1.84558 1.74517 1.15402 0.97438 1.26583 1.74906 1.22031 1.18929 0.99722 1.22831 1.00993 0.83940 0.95256 0.93756 0.90298 0.91901 0.91073 0.88787 0.91900 0.97311 0.94966 0.98827 0.93801 0.75275 0.79689 0.75963 0.76020 0.70895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.05 71.98 0.65 -2.08 16 2 C -0.09 -2.37 2.48 -10.77 -0.03 -2.40 16 3 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.11 -2.80 5.20 30.67 0.16 -2.64 16 5 C 0.13 4.77 6.52 86.36 0.56 5.33 16 6 N -0.60 -28.04 2.91 -699.10 -2.03 -30.07 16 7 C -0.24 -12.66 9.58 84.04 0.81 -11.86 16 8 H 0.08 3.81 7.88 -2.91 -0.02 3.79 16 9 C -0.05 -3.08 4.92 84.86 0.42 -2.66 16 10 N -0.94 -59.09 11.20 21.65 0.24 -58.84 16 11 Si 0.95 46.40 29.59 68.60 2.03 48.43 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.31 -16.61 7.11 99.48 0.71 -15.91 16 14 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.17 8.51 4.91 86.37 0.42 8.93 16 16 C 0.14 5.26 2.24 45.07 0.10 5.36 16 17 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 18 N -0.68 -22.56 4.20 -445.62 -1.87 -24.43 16 19 C 0.55 22.13 7.74 86.60 0.67 22.80 16 20 O -0.57 -29.86 15.94 -4.15 -0.07 -29.93 16 21 C -0.13 -4.25 6.06 -18.61 -0.11 -4.37 16 22 C 0.00 -0.01 9.63 22.83 0.22 0.21 16 23 C -0.13 -1.14 9.91 21.94 0.22 -0.92 16 24 C 0.09 1.07 10.93 83.26 0.91 1.98 16 25 N -0.41 -10.08 2.97 -462.36 -1.37 -11.45 16 26 C 0.33 8.96 9.41 179.66 1.69 10.65 16 27 O -0.42 -7.06 13.65 -90.35 -1.23 -8.30 16 28 N -0.29 -11.23 12.20 -173.35 -2.11 -13.35 16 29 N -0.31 -13.81 11.75 -51.50 -0.61 -14.42 16 30 C 0.22 8.02 7.75 135.68 1.05 9.08 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.06 1.12 7.54 -2.39 -0.02 1.11 16 34 H 0.07 1.52 6.40 -2.39 -0.02 1.50 16 35 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 37 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 39 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 40 H 0.04 2.68 6.06 -2.39 -0.01 2.66 16 41 H 0.41 10.25 4.74 -92.71 -0.44 9.81 16 42 H 0.19 1.88 6.48 -2.91 -0.02 1.87 16 43 H 0.22 -0.65 8.06 -2.91 -0.02 -0.67 16 44 H 0.22 0.27 8.06 -2.91 -0.02 0.25 16 45 H 0.43 2.35 9.06 -74.06 -0.67 1.68 16 Total: -1.00 -98.03 369.01 0.66 -97.37 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -0.05 Total: 7.59 kcal Atomic # 6 Polarization: 29.66 SS G_CDS: 7.74 Total: 37.41 kcal Atomic # 7 Polarization: -144.81 SS G_CDS: -7.76 Total: -152.57 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -1.30 Total: -38.22 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -98.03 0.66 -97.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968538042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.475 kcal (2) G-P(sol) polarization free energy of solvation -98.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds