Wall clock time and date at job start Wed Apr 1 2020 05:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45108 * 2 1 4 4 C 1.53033 * 109.46080 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31362 * 178.61862 * 4 2 1 6 6 N 1.46924 * 108.77722 * 54.63094 * 5 4 2 7 7 C 1.36939 * 120.62668 * 126.41477 * 6 5 4 8 8 H 1.08002 * 119.99837 * 207.67188 * 7 6 5 9 9 C 1.38814 * 120.00348 * 27.67325 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.36426 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.36621 * 9 7 6 12 12 H 1.48501 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47119 * 119.99713 * 11 9 7 14 14 H 1.48497 * 109.46922 * 239.99906 * 11 9 7 15 15 C 1.46916 * 118.74104 * 306.39624 * 6 5 4 16 16 C 1.53046 * 109.45504 * 119.96466 * 2 1 3 17 17 H 1.08994 * 109.52502 * 61.42401 * 16 2 1 18 18 N 1.46494 * 109.49967 * 301.33261 * 16 2 1 19 19 C 1.34777 * 120.00022 * 155.16043 * 18 16 2 20 20 O 1.21674 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.46898 * 120.00200 * 180.02562 * 19 18 16 22 22 C 1.36383 * 126.76184 * 0.03225 * 21 19 18 23 23 N 1.35446 * 109.77427 * 179.97438 * 22 21 19 24 24 H 0.97002 * 124.79841 * 179.97438 * 23 22 21 25 25 C 1.38058 * 110.41357 * 359.97438 * 23 22 21 26 26 C 1.39116 * 133.15192 * 179.97438 * 25 23 22 27 27 C 1.37753 * 119.95872 * 180.02562 * 26 25 23 28 28 C 1.38945 * 120.61252 * 0.02562 * 27 26 25 29 29 F 1.35102 * 119.87514 * 179.97438 * 28 27 26 30 30 C 1.37949 * 120.24974 * 359.97438 * 28 27 26 31 31 C 1.39298 * 119.64487 * 359.69494 * 30 28 27 32 32 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47093 * 299.97184 * 1 2 3 34 34 H 1.09007 * 109.46855 * 59.96271 * 1 2 3 35 35 H 1.08999 * 109.50141 * 58.66605 * 4 2 1 36 36 H 1.09003 * 109.50007 * 298.56898 * 4 2 1 37 37 H 1.09007 * 109.58883 * 174.42340 * 5 4 2 38 38 H 1.08999 * 109.58260 * 294.69938 * 5 4 2 39 39 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 40 40 H 1.08999 * 109.59316 * 173.39424 * 15 6 5 41 41 H 1.09007 * 109.58801 * 293.81953 * 15 6 5 42 42 H 0.96997 * 119.99970 * 335.16763 * 18 16 2 43 43 H 1.08004 * 125.11841 * 0.02562 * 22 21 19 44 44 H 1.07993 * 120.01997 * 0.02941 * 26 25 23 45 45 H 1.08001 * 119.69221 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.18183 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 5.0095 -2.9657 0.8284 9 6 5.8548 -2.4222 -1.0644 10 7 6.0606 -1.4204 -1.8927 11 14 6.7446 -4.0445 -1.3213 12 1 6.3420 -5.0032 -0.2612 13 1 6.3875 -4.5996 -2.6516 14 1 8.2111 -3.8204 -1.2559 15 6 3.5713 -0.6886 1.2643 16 6 2.0397 -0.7208 1.2502 17 1 1.6978 -1.7556 1.2390 18 7 1.5255 -0.0487 2.4460 19 6 1.4000 -0.7313 3.6013 20 8 1.7142 -1.9057 3.6511 21 6 0.8838 -0.0575 4.8002 22 6 0.4923 1.2451 4.8997 23 7 0.0746 1.5029 6.1621 24 1 -0.2505 2.3623 6.4729 25 6 0.1768 0.3697 6.9440 26 6 -0.1143 0.1050 8.2783 27 6 0.0974 -1.1557 8.7916 28 6 0.6015 -2.1712 7.9884 29 9 0.8039 -3.4020 8.5074 30 6 0.8960 -1.9274 6.6629 31 6 0.6795 -0.6583 6.1311 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5134 0.8903 34 1 -0.3633 0.5145 -0.8897 35 1 1.6573 -0.2207 -2.1398 36 1 1.6978 -1.7556 -1.2383 37 1 3.9417 -1.2846 -2.0983 38 1 3.9143 0.3406 -1.3699 39 1 6.6747 -1.5242 -2.6364 40 1 3.9416 -1.2845 2.0985 41 1 3.9143 0.3409 1.3674 42 1 1.2753 0.8876 2.4062 43 1 0.5116 1.9630 4.0930 44 1 -0.5062 0.8873 8.9113 45 1 -0.1297 -1.3563 9.8283 46 1 1.2874 -2.7177 6.0395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968703065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:09 Heat of formation + Delta-G solvation = -6.218684 kcal Electronic energy + Delta-G solvation = -29935.494920 eV Core-core repulsion = 25740.229651 eV Total energy + Delta-G solvation = -4195.265269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.88040 -41.71005 -39.40039 -37.46431 -36.96831 -34.40720 -32.99657 -32.30822 -31.06330 -29.83654 -29.35365 -28.47790 -27.18843 -24.17641 -23.50085 -23.35878 -22.18756 -21.66391 -20.97869 -19.83005 -19.20523 -18.48878 -17.51196 -16.75454 -16.59011 -16.20936 -15.71265 -15.58458 -15.34690 -15.01009 -14.66377 -14.23537 -14.20578 -13.73230 -13.67617 -13.40820 -13.32882 -13.30340 -13.14239 -12.97859 -12.77522 -12.42655 -11.98323 -11.62984 -11.61313 -11.47618 -11.22361 -10.99956 -10.77427 -10.62533 -10.23155 -10.11092 -10.03167 -9.89575 -9.80725 -9.58681 -9.43499 -8.75017 -8.53082 -8.36011 -8.04526 -6.62881 -5.74273 -3.15723 0.61982 1.09787 1.81130 2.60583 3.30323 3.42211 3.43608 3.50680 3.55695 3.74191 4.05987 4.31042 4.45168 4.56147 4.67689 4.78456 5.02442 5.09871 5.13911 5.30966 5.38017 5.41506 5.44698 5.51816 5.65233 5.70909 5.91239 5.93228 5.99166 5.99886 6.10592 6.20557 6.23436 6.25881 6.30907 6.32136 6.59620 6.66913 6.73500 6.75651 6.78230 6.88761 6.98747 7.07838 7.39052 7.68376 7.85222 7.88585 8.49155 8.59459 9.26925 9.89327 10.44635 11.34509 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002756 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.154517 B =10157.844687 C =11655.608413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 H 0.066 0.934 4 C -0.134 4.134 5 C 0.167 3.833 6 N -0.588 5.588 7 C -0.247 4.247 8 H 0.067 0.933 9 C 0.001 3.999 10 N -0.905 5.905 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.291 1.291 15 C 0.142 3.858 16 C 0.135 3.865 17 H 0.087 0.913 18 N -0.718 5.718 19 C 0.583 3.417 20 O -0.535 6.535 21 C -0.215 4.215 22 C 0.110 3.890 23 N -0.577 5.577 24 H 0.421 0.579 25 C 0.074 3.926 26 C -0.098 4.098 27 C -0.133 4.133 28 C 0.075 3.925 29 F -0.140 7.140 30 C -0.094 4.094 31 C -0.039 4.039 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.390 0.610 43 H 0.182 0.818 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 10.833 16.333 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.084 0.916 4 C -0.173 4.173 5 C 0.041 3.959 6 N -0.310 5.310 7 C -0.377 4.377 8 H 0.085 0.915 9 C -0.197 4.197 10 N -0.550 5.550 11 Si 0.731 3.269 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.218 1.218 15 C 0.014 3.986 16 C 0.030 3.970 17 H 0.105 0.895 18 N -0.369 5.369 19 C 0.370 3.630 20 O -0.412 6.412 21 C -0.226 4.226 22 C -0.022 4.022 23 N -0.179 5.179 24 H 0.259 0.741 25 C -0.031 4.031 26 C -0.118 4.118 27 C -0.153 4.153 28 C 0.055 3.945 29 F -0.119 7.119 30 C -0.114 4.114 31 C -0.043 4.043 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.036 0.964 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.223 0.777 43 H 0.199 0.801 44 H 0.149 0.851 45 H 0.157 0.843 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.672 10.012 16.270 25.356 hybrid contribution 0.266 0.046 -0.023 0.271 sum -16.405 10.058 16.247 25.185 Atomic orbital electron populations 1.21852 0.96057 1.01623 1.00563 1.21301 0.94491 0.99598 0.95572 0.91573 1.22247 1.00676 0.99589 0.94828 1.20836 0.87315 0.97283 0.90422 1.44003 1.48058 1.39810 0.99150 1.19283 1.09530 1.02772 1.06116 0.91479 1.25007 0.97267 0.97514 0.99899 1.70045 1.37887 1.28993 1.18047 0.86229 0.79064 0.83817 0.77793 1.20114 1.21581 1.21782 1.21199 0.90176 0.96571 0.90644 1.21742 0.96607 0.96993 0.81695 0.89491 1.45928 1.66619 1.13881 1.10443 1.17143 0.77818 0.86205 0.81844 1.90817 1.50054 1.15823 1.84481 1.20191 1.14409 0.93686 0.94332 1.22144 0.96479 0.96604 0.87023 1.41474 1.56173 1.11488 1.08763 0.74134 1.18237 1.04815 0.86848 0.93189 1.19789 1.03447 0.97050 0.91547 1.20764 1.02217 0.91913 1.00362 1.17381 1.04099 0.80809 0.92251 1.91498 1.93143 1.40303 1.86933 1.20669 0.99931 0.97335 0.93434 1.18444 1.01222 0.92527 0.92149 0.92889 0.93469 0.93064 0.92787 0.92394 0.89278 0.96397 0.93780 0.92291 0.96604 0.77729 0.80122 0.85050 0.84335 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.02 37.16 0.34 -1.46 16 2 C -0.09 -1.40 2.27 -90.58 -0.21 -1.61 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 5 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 6 N -0.59 -14.97 2.99 -172.32 -0.52 -15.49 16 7 C -0.25 -7.02 9.59 -15.06 -0.14 -7.17 16 8 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 9 C 0.00 0.03 4.91 -17.43 -0.09 -0.05 16 10 N -0.90 -26.44 11.19 55.49 0.62 -25.82 16 11 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 C 0.14 3.10 6.09 -3.71 -0.02 3.07 16 16 C 0.13 2.38 2.06 -67.81 -0.14 2.24 16 17 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 18 N -0.72 -9.99 4.36 -54.93 -0.24 -10.23 16 19 C 0.58 9.22 7.76 -12.76 -0.10 9.12 16 20 O -0.53 -10.94 15.82 5.21 0.08 -10.85 16 21 C -0.22 -2.68 6.27 -103.31 -0.65 -3.33 16 22 C 0.11 0.84 11.33 -16.62 -0.19 0.65 16 23 N -0.58 -3.69 5.99 -10.47 -0.06 -3.75 16 24 H 0.42 1.08 8.96 -40.82 -0.37 0.71 16 25 C 0.07 0.70 7.26 -83.93 -0.61 0.09 16 26 C -0.10 -0.77 10.07 -39.43 -0.40 -1.16 16 27 C -0.13 -1.20 9.99 -39.50 -0.39 -1.60 16 28 C 0.07 0.90 7.29 -39.43 -0.29 0.61 16 29 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 30 C -0.09 -1.30 9.83 -39.29 -0.39 -1.69 16 31 C -0.04 -0.50 6.27 -104.95 -0.66 -1.15 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 40 H 0.06 1.40 7.93 -51.93 -0.41 0.99 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.39 3.92 7.18 -40.82 -0.29 3.62 16 43 H 0.18 0.66 7.38 -52.48 -0.39 0.28 16 44 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 45 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.15 2.30 7.45 -52.49 -0.39 1.90 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -35.07 378.36 -9.79 -44.86 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -6.29 Total: 2.19 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.09 Total: -2.12 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.20 Total: -55.29 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.07 -9.79 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968703065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.643 kcal (2) G-P(sol) polarization free energy of solvation -35.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds