Wall clock time and date at job start Wed Apr 1 2020 05:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.45108 * 2 1 4 4 C 1.53033 * 109.46080 * 240.03322 * 2 1 3 5 5 C 1.53194 * 109.31362 * 178.61862 * 4 2 1 6 6 N 1.46924 * 108.77722 * 54.63094 * 5 4 2 7 7 C 1.36939 * 120.62668 * 126.41477 * 6 5 4 8 8 H 1.08002 * 119.99837 * 207.67188 * 7 6 5 9 9 C 1.38814 * 120.00348 * 27.67325 * 7 6 5 10 10 N 1.31612 * 119.99931 * 17.36426 * 9 7 6 11 11 Si 1.86801 * 120.00047 * 197.36621 * 9 7 6 12 12 H 1.48501 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47119 * 119.99713 * 11 9 7 14 14 H 1.48497 * 109.46922 * 239.99906 * 11 9 7 15 15 C 1.46916 * 118.74104 * 306.39624 * 6 5 4 16 16 C 1.53046 * 109.45504 * 119.96466 * 2 1 3 17 17 H 1.08994 * 109.52502 * 61.42401 * 16 2 1 18 18 N 1.46494 * 109.49967 * 301.33261 * 16 2 1 19 19 C 1.34777 * 120.00022 * 155.16043 * 18 16 2 20 20 O 1.21674 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.46898 * 120.00200 * 180.02562 * 19 18 16 22 22 C 1.36383 * 126.76184 * 0.03225 * 21 19 18 23 23 N 1.35446 * 109.77427 * 179.97438 * 22 21 19 24 24 H 0.97002 * 124.79841 * 179.97438 * 23 22 21 25 25 C 1.38058 * 110.41357 * 359.97438 * 23 22 21 26 26 C 1.39116 * 133.15192 * 179.97438 * 25 23 22 27 27 C 1.37753 * 119.95872 * 180.02562 * 26 25 23 28 28 C 1.38945 * 120.61252 * 0.02562 * 27 26 25 29 29 F 1.35102 * 119.87514 * 179.97438 * 28 27 26 30 30 C 1.37949 * 120.24974 * 359.97438 * 28 27 26 31 31 C 1.39298 * 119.64487 * 359.69494 * 30 28 27 32 32 H 1.08999 * 109.47142 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47093 * 299.97184 * 1 2 3 34 34 H 1.09007 * 109.46855 * 59.96271 * 1 2 3 35 35 H 1.08999 * 109.50141 * 58.66605 * 4 2 1 36 36 H 1.09003 * 109.50007 * 298.56898 * 4 2 1 37 37 H 1.09007 * 109.58883 * 174.42340 * 5 4 2 38 38 H 1.08999 * 109.58260 * 294.69938 * 5 4 2 39 39 H 0.97000 * 120.00190 * 179.97438 * 10 9 7 40 40 H 1.08999 * 109.59316 * 173.39424 * 15 6 5 41 41 H 1.09007 * 109.58801 * 293.81953 * 15 6 5 42 42 H 0.96997 * 119.99970 * 335.16763 * 18 16 2 43 43 H 1.08004 * 125.11841 * 0.02562 * 22 21 19 44 44 H 1.07993 * 120.01997 * 0.02941 * 26 25 23 45 45 H 1.08001 * 119.69221 * 179.97438 * 27 26 25 46 46 H 1.07996 * 120.18183 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7207 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0001 7 6 4.9764 -2.2734 0.0001 8 1 5.0095 -2.9657 0.8284 9 6 5.8548 -2.4222 -1.0644 10 7 6.0606 -1.4204 -1.8927 11 14 6.7446 -4.0445 -1.3213 12 1 6.3420 -5.0032 -0.2612 13 1 6.3875 -4.5996 -2.6516 14 1 8.2111 -3.8204 -1.2559 15 6 3.5713 -0.6886 1.2643 16 6 2.0397 -0.7208 1.2502 17 1 1.6978 -1.7556 1.2390 18 7 1.5255 -0.0487 2.4460 19 6 1.4000 -0.7313 3.6013 20 8 1.7142 -1.9057 3.6511 21 6 0.8838 -0.0575 4.8002 22 6 0.4923 1.2451 4.8997 23 7 0.0746 1.5029 6.1621 24 1 -0.2505 2.3623 6.4729 25 6 0.1768 0.3697 6.9440 26 6 -0.1143 0.1050 8.2783 27 6 0.0974 -1.1557 8.7916 28 6 0.6015 -2.1712 7.9884 29 9 0.8039 -3.4020 8.5074 30 6 0.8960 -1.9274 6.6629 31 6 0.6795 -0.6583 6.1311 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5134 0.8903 34 1 -0.3633 0.5145 -0.8897 35 1 1.6573 -0.2207 -2.1398 36 1 1.6978 -1.7556 -1.2383 37 1 3.9417 -1.2846 -2.0983 38 1 3.9143 0.3406 -1.3699 39 1 6.6747 -1.5242 -2.6364 40 1 3.9416 -1.2845 2.0985 41 1 3.9143 0.3409 1.3674 42 1 1.2753 0.8876 2.4062 43 1 0.5116 1.9630 4.0930 44 1 -0.5062 0.8873 8.9113 45 1 -0.1297 -1.3563 9.8283 46 1 1.2874 -2.7177 6.0395 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968703065.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:08 Heat of formation + Delta-G solvation = -30.036238 kcal Electronic energy + Delta-G solvation = -29936.527726 eV Core-core repulsion = 25740.229651 eV Total energy + Delta-G solvation = -4196.298076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.85744 -42.47394 -40.73833 -38.97720 -37.73476 -36.13843 -34.45515 -33.15762 -33.00900 -31.04731 -30.14712 -29.70219 -28.80013 -25.95159 -24.75791 -24.18158 -23.12102 -22.89004 -22.62126 -21.25283 -20.43332 -19.32910 -18.73534 -18.37944 -17.51992 -17.16070 -17.06821 -16.64974 -16.57628 -16.20167 -16.10597 -15.57725 -15.43109 -15.21439 -15.02596 -14.76792 -14.68516 -14.43734 -14.19224 -14.07786 -13.74461 -13.64444 -13.53038 -13.17993 -13.13680 -12.76392 -12.63702 -12.39480 -12.28525 -12.05678 -12.00088 -11.95784 -11.63842 -11.41009 -11.22694 -10.87052 -10.85761 -10.60201 -10.06025 -9.29255 -8.86981 -8.68064 -7.91897 -5.36564 -0.15793 0.28917 0.95511 1.41340 1.43040 1.55079 1.98961 2.24581 2.38398 2.50542 2.75078 3.21683 3.24997 3.60735 3.69759 3.78164 3.83926 3.89803 4.04702 4.07447 4.15541 4.31262 4.40279 4.47282 4.52909 4.64186 4.65291 4.70701 4.78386 4.96075 4.98128 4.99707 5.06495 5.13726 5.15817 5.20092 5.23916 5.27550 5.42677 5.45288 5.48692 5.49459 5.62209 5.63343 5.79139 5.95108 6.36103 6.54041 6.76117 7.12349 7.44676 7.82490 8.31452 9.13579 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.002756 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.154517 B =10157.844687 C =11655.608413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.080 4.080 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.172 3.828 6 N -0.607 5.607 7 C -0.267 4.267 8 H 0.048 0.952 9 C -0.042 4.042 10 N -0.927 5.927 11 Si 0.963 3.037 12 H -0.278 1.278 13 H -0.282 1.282 14 H -0.286 1.286 15 C 0.145 3.855 16 C 0.153 3.847 17 H 0.048 0.952 18 N -0.700 5.700 19 C 0.580 3.420 20 O -0.600 6.600 21 C -0.275 4.275 22 C 0.166 3.834 23 N -0.549 5.549 24 H 0.447 0.553 25 C 0.073 3.927 26 C -0.071 4.071 27 C -0.136 4.136 28 C 0.063 3.937 29 F -0.154 7.154 30 C -0.138 4.138 31 C -0.067 4.067 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.008 0.992 39 H 0.253 0.747 40 H 0.022 0.978 41 H 0.025 0.975 42 H 0.414 0.586 43 H 0.234 0.766 44 H 0.181 0.819 45 H 0.169 0.831 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.880 15.237 17.685 30.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 H 0.105 0.895 4 C -0.164 4.164 5 C 0.047 3.953 6 N -0.331 5.331 7 C -0.398 4.398 8 H 0.066 0.934 9 C -0.238 4.238 10 N -0.573 5.573 11 Si 0.791 3.209 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.213 1.213 15 C 0.018 3.982 16 C 0.046 3.954 17 H 0.067 0.933 18 N -0.352 5.352 19 C 0.370 3.630 20 O -0.482 6.482 21 C -0.286 4.286 22 C 0.030 3.970 23 N -0.152 5.152 24 H 0.290 0.710 25 C -0.033 4.033 26 C -0.091 4.091 27 C -0.156 4.156 28 C 0.043 3.957 29 F -0.132 7.132 30 C -0.158 4.158 31 C -0.072 4.072 32 H 0.056 0.944 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.062 0.938 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.252 0.748 43 H 0.250 0.750 44 H 0.199 0.801 45 H 0.186 0.814 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -19.599 14.504 17.662 30.108 hybrid contribution 1.168 -1.245 -0.355 1.744 sum -18.431 13.259 17.308 28.549 Atomic orbital electron populations 1.21777 0.92804 1.01517 1.03090 1.21226 0.96999 0.99480 0.92241 0.89495 1.22093 0.96627 0.99723 0.97929 1.20718 0.90735 0.95504 0.88340 1.44220 1.48180 1.39740 1.00978 1.19393 1.10605 1.03724 1.06053 0.93434 1.25667 0.98085 1.00441 0.99605 1.70158 1.38413 1.30391 1.18299 0.85288 0.77917 0.80096 0.77647 1.20264 1.20795 1.21270 1.21230 0.93210 0.95719 0.88071 1.21179 0.93392 0.96178 0.84615 0.93323 1.45562 1.65979 1.14806 1.08807 1.17740 0.76648 0.85576 0.83001 1.90789 1.52973 1.18907 1.85482 1.19908 1.19532 0.96114 0.93022 1.22752 0.91205 0.94943 0.88112 1.41479 1.54213 1.11702 1.07811 0.70976 1.18351 1.04491 0.86812 0.93656 1.20315 1.00383 0.97321 0.91051 1.21101 1.01678 0.91495 1.01310 1.17725 1.04659 0.81212 0.92132 1.91452 1.93358 1.41464 1.86971 1.20516 1.03284 0.97716 0.94310 1.18731 1.01995 0.92992 0.93459 0.94390 0.90727 0.90732 0.89683 0.93983 0.92848 0.97399 0.93802 0.95889 0.95744 0.74805 0.75016 0.80140 0.81381 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.02 71.98 0.65 -2.26 16 2 C -0.08 -2.35 2.27 -10.77 -0.02 -2.37 16 3 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 4 C -0.12 -4.51 5.36 30.67 0.16 -4.35 16 5 C 0.17 8.33 5.31 86.36 0.46 8.79 16 6 N -0.61 -32.60 2.99 -699.09 -2.09 -34.70 16 7 C -0.27 -16.11 9.59 84.03 0.81 -15.30 16 8 H 0.05 2.97 7.89 -2.91 -0.02 2.95 16 9 C -0.04 -2.47 4.91 84.86 0.42 -2.06 16 10 N -0.93 -55.87 11.19 21.65 0.24 -55.63 16 11 Si 0.96 47.65 29.59 68.60 2.03 49.68 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 C 0.14 6.65 6.09 86.37 0.53 7.18 16 16 C 0.15 5.53 2.06 45.08 0.09 5.63 16 17 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 18 N -0.70 -18.96 4.36 -445.92 -1.94 -20.91 16 19 C 0.58 19.16 7.76 86.51 0.67 19.83 16 20 O -0.60 -27.34 15.82 -4.26 -0.07 -27.41 16 21 C -0.28 -6.65 6.27 -19.02 -0.12 -6.77 16 22 C 0.17 1.74 11.33 83.70 0.95 2.69 16 23 N -0.55 -4.00 5.99 -187.04 -1.12 -5.12 16 24 H 0.45 -0.92 8.96 -92.71 -0.83 -1.75 16 25 C 0.07 1.13 7.26 38.89 0.28 1.42 16 26 C -0.07 -0.81 10.07 22.37 0.23 -0.58 16 27 C -0.14 -2.19 9.99 22.32 0.22 -1.96 16 28 C 0.06 1.60 7.29 22.37 0.16 1.77 16 29 F -0.15 -4.34 17.26 44.97 0.78 -3.56 16 30 C -0.14 -4.28 9.83 22.46 0.22 -4.06 16 31 C -0.07 -1.75 6.27 -20.08 -0.13 -1.88 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 2.95 6.04 -2.38 -0.01 2.93 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 40 H 0.02 1.18 7.93 -2.39 -0.02 1.16 16 41 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.41 6.82 7.18 -92.71 -0.67 6.15 16 43 H 0.23 -0.03 7.38 -2.91 -0.02 -0.06 16 44 H 0.18 0.34 8.06 -2.91 -0.02 0.32 16 45 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.11 4.00 7.45 -2.91 -0.02 3.98 16 Total: -1.00 -89.28 378.36 2.94 -86.35 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -0.46 Total: 5.59 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: 5.58 Total: 5.71 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -4.92 Total: -116.36 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.07 Total: -27.41 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.56 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -89.28 2.94 -86.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968703065.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.310 kcal (2) G-P(sol) polarization free energy of solvation -89.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds