Wall clock time and date at job start Wed Apr 1 2020 05:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.45730 * 2 1 4 4 C 1.53034 * 109.46365 * 119.96090 * 2 1 3 5 5 C 1.53192 * 109.31220 * 181.38775 * 4 2 1 6 6 N 1.46921 * 108.77937 * 305.36320 * 5 4 2 7 7 C 1.36940 * 120.63125 * 233.59130 * 6 5 4 8 8 H 1.07995 * 120.00014 * 27.67379 * 7 6 5 9 9 C 1.38815 * 119.99852 * 207.67775 * 7 6 5 10 10 N 1.31621 * 119.99994 * 17.37076 * 9 7 6 11 11 Si 1.86797 * 120.00146 * 197.37891 * 9 7 6 12 12 H 1.48507 * 109.46823 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47487 * 119.99518 * 11 9 7 14 14 H 1.48495 * 109.47133 * 240.00070 * 11 9 7 15 15 C 1.46929 * 118.73840 * 53.60530 * 6 5 4 16 16 C 1.53049 * 109.46144 * 240.03212 * 2 1 3 17 17 H 1.09004 * 109.49337 * 298.59178 * 16 2 1 18 18 N 1.46495 * 109.49843 * 58.65556 * 16 2 1 19 19 C 1.34775 * 120.00089 * 205.00093 * 18 16 2 20 20 O 1.21673 * 120.00160 * 0.02562 * 19 18 16 21 21 C 1.46903 * 119.99959 * 180.02562 * 19 18 16 22 22 C 1.36384 * 126.76754 * 359.97438 * 21 19 18 23 23 N 1.35447 * 109.77652 * 180.02562 * 22 21 19 24 24 H 0.97000 * 124.79389 * 180.02562 * 23 22 21 25 25 C 1.38046 * 110.41463 * 0.02562 * 23 22 21 26 26 C 1.39113 * 133.16222 * 180.02562 * 25 23 22 27 27 C 1.37747 * 119.97082 * 180.23083 * 26 25 23 28 28 C 1.38952 * 120.61112 * 359.50876 * 27 26 25 29 29 F 1.35094 * 119.88264 * 180.22937 * 28 27 26 30 30 C 1.37956 * 120.23996 * 0.45592 * 28 27 26 31 31 C 1.39285 * 119.65320 * 359.79287 * 30 28 27 32 32 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47302 * 299.97119 * 1 2 3 34 34 H 1.09000 * 109.47765 * 59.97666 * 1 2 3 35 35 H 1.08999 * 109.49758 * 301.33886 * 4 2 1 36 36 H 1.08993 * 109.50356 * 61.43566 * 4 2 1 37 37 H 1.09001 * 109.59089 * 65.15302 * 5 4 2 38 38 H 1.09003 * 109.58632 * 185.42884 * 5 4 2 39 39 H 0.96998 * 119.99795 * 180.02562 * 10 9 7 40 40 H 1.08999 * 109.58559 * 186.60835 * 15 6 5 41 41 H 1.09007 * 109.58232 * 66.18158 * 15 6 5 42 42 H 0.97001 * 119.99773 * 25.00449 * 18 16 2 43 43 H 1.08000 * 125.10673 * 0.03559 * 22 21 19 44 44 H 1.08010 * 120.01457 * 359.95144 * 26 25 23 45 45 H 1.08004 * 119.70164 * 179.69591 * 27 26 25 46 46 H 1.08004 * 120.16701 * 179.81551 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2642 6 7 4.0679 -1.2486 0.0000 7 6 4.9765 -2.2732 0.0001 8 1 5.0099 -2.9652 0.8285 9 6 5.8547 -2.4221 -1.0646 10 7 6.0604 -1.4203 -1.8931 11 14 6.7444 -4.0444 -1.3216 12 1 6.3428 -5.0027 -0.2605 13 1 6.3870 -4.5997 -2.6516 14 1 8.2109 -3.8205 -1.2563 15 6 3.5713 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2501 17 1 1.6974 -1.7556 -1.2385 18 7 1.5255 -0.0489 -2.4460 19 6 1.3970 -0.7326 -3.6003 20 8 1.7078 -1.9079 -3.6492 21 6 0.8817 -0.0587 -4.7997 22 6 0.4939 1.2450 -4.9004 23 7 0.0758 1.5025 -6.1628 24 1 -0.2471 2.3625 -6.4743 25 6 0.1739 0.3681 -6.9433 26 6 -0.1191 0.1024 -8.2770 27 6 0.0835 -1.1608 -8.7877 28 6 0.5893 -2.1758 -7.9847 29 9 0.7866 -3.4081 -8.5020 30 6 0.8864 -1.9309 -6.6600 31 6 0.6809 -0.6588 -6.1314 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8902 34 1 -0.3634 0.5142 -0.8897 35 1 1.6572 -0.2205 2.1398 36 1 1.6979 -1.7554 1.2385 37 1 3.9143 0.3412 1.3672 38 1 3.9417 -1.2820 2.0999 39 1 6.6737 -1.5246 -2.6373 40 1 3.9417 -1.2846 -2.0984 41 1 3.9142 0.3410 -1.3675 42 1 1.2774 0.8880 -2.4070 43 1 0.5169 1.9639 -4.0948 44 1 -0.5095 0.8851 -8.9107 45 1 -0.1501 -1.3635 -9.8225 46 1 1.2768 -2.7215 -6.0362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968703068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:22 Heat of formation + Delta-G solvation = -5.248737 kcal Electronic energy + Delta-G solvation = -30339.324295 eV Core-core repulsion = 26144.101086 eV Total energy + Delta-G solvation = -4195.223209 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.77371 -41.58074 -39.23955 -37.38947 -36.84761 -34.26429 -33.06039 -32.20843 -30.93578 -29.75944 -29.23775 -28.31296 -27.24662 -24.10932 -23.45243 -23.26694 -22.07210 -21.58376 -20.93585 -19.69630 -19.12569 -18.38905 -17.39644 -16.74502 -16.47412 -16.08016 -15.59715 -15.50054 -15.22218 -14.92317 -14.65690 -14.10245 -13.90791 -13.70433 -13.66552 -13.42224 -13.26352 -13.24654 -12.99202 -12.86076 -12.64353 -12.36399 -11.95698 -11.61924 -11.55855 -11.51211 -11.10427 -10.85898 -10.66492 -10.59329 -10.40328 -10.10214 -9.94388 -9.88454 -9.84694 -9.46204 -9.33162 -8.47394 -8.39967 -8.37052 -7.91707 -6.60597 -5.70327 -3.13265 0.74289 1.21377 1.95639 2.72452 3.43646 3.46947 3.55537 3.56618 3.61400 3.92501 4.17840 4.42108 4.57141 4.59475 4.78951 4.91304 5.13459 5.19885 5.22395 5.28601 5.43478 5.50084 5.51896 5.60680 5.67816 5.81922 5.94485 6.02357 6.03340 6.06484 6.11338 6.15380 6.27572 6.35863 6.41540 6.45081 6.49536 6.58598 6.77448 6.80106 6.86895 7.00096 7.02609 7.12116 7.36646 7.79438 7.89319 8.04609 8.53530 8.79257 9.28599 9.92695 10.47049 11.37623 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.003530 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.051629 B = 7929.972150 C = 9871.872015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.126 4.126 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.066 0.934 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.900 3.100 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.291 1.291 15 C 0.166 3.834 16 C 0.126 3.874 17 H 0.083 0.917 18 N -0.717 5.717 19 C 0.582 3.418 20 O -0.531 6.531 21 C -0.211 4.211 22 C 0.107 3.893 23 N -0.578 5.578 24 H 0.420 0.580 25 C 0.075 3.925 26 C -0.099 4.099 27 C -0.133 4.133 28 C 0.073 3.927 29 F -0.141 7.141 30 C -0.093 4.093 31 C -0.038 4.038 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.017 0.983 38 H 0.055 0.945 39 H 0.253 0.747 40 H 0.096 0.904 41 H 0.016 0.984 42 H 0.387 0.613 43 H 0.181 0.819 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.853 10.756 -8.805 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.386 4.386 8 H 0.084 0.916 9 C -0.192 4.192 10 N -0.542 5.542 11 Si 0.730 3.270 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.218 1.218 15 C 0.039 3.961 16 C 0.021 3.979 17 H 0.101 0.899 18 N -0.367 5.367 19 C 0.369 3.631 20 O -0.407 6.407 21 C -0.222 4.222 22 C -0.025 4.025 23 N -0.180 5.180 24 H 0.258 0.742 25 C -0.031 4.031 26 C -0.120 4.120 27 C -0.153 4.153 28 C 0.053 3.947 29 F -0.119 7.119 30 C -0.112 4.112 31 C -0.043 4.043 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.034 0.966 42 H 0.220 0.780 43 H 0.198 0.802 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.515 9.935 -9.000 21.270 hybrid contribution 0.290 0.040 -0.443 0.531 sum -16.225 9.974 -9.443 21.258 Atomic orbital electron populations 1.21844 0.96061 1.01613 1.00564 1.21302 0.94499 0.99604 0.95684 0.91599 1.22069 0.98969 1.00075 0.95421 1.20948 0.90818 0.96409 0.90229 1.43970 1.48083 1.39871 0.99186 1.19177 1.09755 1.03232 1.06391 0.91605 1.25009 0.97158 0.97358 0.99633 1.70020 1.37500 1.29038 1.17683 0.86269 0.78858 0.83869 0.78049 1.20202 1.21366 1.21819 1.21107 0.86558 0.97385 0.91000 1.21968 0.98241 0.96419 0.81252 0.89922 1.45861 1.66661 1.13572 1.10577 1.17109 0.77890 0.86293 0.81827 1.90826 1.49761 1.15830 1.84322 1.20241 1.13906 0.93674 0.94340 1.22119 0.96823 0.96578 0.86997 1.41446 1.56404 1.11322 1.08817 0.74228 1.18232 1.04742 0.86885 0.93211 1.19768 1.03670 0.96972 0.91547 1.20744 1.02321 0.91902 1.00314 1.17375 1.04279 0.80761 0.92280 1.91490 1.93249 1.40208 1.86991 1.20689 0.99695 0.97350 0.93473 1.18451 1.01144 0.92503 0.92222 0.92904 0.93244 0.93293 0.92697 0.92087 0.96528 0.92670 0.93730 0.88614 0.96630 0.77997 0.80184 0.85118 0.84403 0.83352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.02 37.15 0.34 -1.47 16 2 C -0.09 -1.43 2.27 -90.58 -0.21 -1.63 16 3 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 4 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 5 C 0.14 2.94 6.51 -3.71 -0.02 2.92 16 6 N -0.59 -14.99 3.00 -172.32 -0.52 -15.50 16 7 C -0.26 -7.26 9.59 -15.06 -0.14 -7.41 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 9 C 0.01 0.22 4.91 -17.43 -0.09 0.13 16 10 N -0.90 -27.16 11.19 55.49 0.62 -26.54 16 11 Si 0.90 22.93 29.59 -169.99 -5.03 17.90 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 14 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 15 C 0.17 4.06 4.89 -3.71 -0.02 4.04 16 16 C 0.13 2.43 2.07 -67.81 -0.14 2.29 16 17 H 0.08 1.85 7.58 -51.93 -0.39 1.45 16 18 N -0.72 -11.39 4.35 -54.93 -0.24 -11.63 16 19 C 0.58 10.54 7.76 -12.75 -0.10 10.44 16 20 O -0.53 -12.24 15.82 5.21 0.08 -12.16 16 21 C -0.21 -3.03 6.27 -103.31 -0.65 -3.68 16 22 C 0.11 0.99 11.33 -16.62 -0.19 0.80 16 23 N -0.58 -4.51 5.99 -10.47 -0.06 -4.57 16 24 H 0.42 1.59 8.96 -40.82 -0.37 1.22 16 25 C 0.07 0.82 7.26 -83.94 -0.61 0.21 16 26 C -0.10 -0.91 10.06 -39.44 -0.40 -1.30 16 27 C -0.13 -1.38 9.99 -39.50 -0.39 -1.77 16 28 C 0.07 0.99 7.29 -39.42 -0.29 0.71 16 29 F -0.14 -2.02 17.26 2.25 0.04 -1.98 16 30 C -0.09 -1.45 9.83 -39.30 -0.39 -1.83 16 31 C -0.04 -0.56 6.26 -104.95 -0.66 -1.22 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.54 7.36 -51.93 -0.38 0.16 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.10 2.79 6.04 -51.93 -0.31 2.47 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.39 4.57 7.19 -40.82 -0.29 4.28 16 43 H 0.18 0.94 7.38 -52.49 -0.39 0.55 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 45 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 46 H 0.15 2.61 7.45 -52.48 -0.39 2.21 16 LS Contribution 378.38 15.07 5.70 5.70 Total: -1.00 -36.12 378.38 -9.79 -45.91 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.29 Total: 3.91 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -4.09 Total: -1.03 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.20 Total: -58.24 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.16 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.12 -9.79 -45.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968703068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.663 kcal (2) G-P(sol) polarization free energy of solvation -36.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds