Wall clock time and date at job start Wed Apr 1 2020 05:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.45730 * 2 1 4 4 C 1.53034 * 109.46365 * 119.96090 * 2 1 3 5 5 C 1.53192 * 109.31220 * 181.38775 * 4 2 1 6 6 N 1.46921 * 108.77937 * 305.36320 * 5 4 2 7 7 C 1.36940 * 120.63125 * 233.59130 * 6 5 4 8 8 H 1.07995 * 120.00014 * 27.67379 * 7 6 5 9 9 C 1.38815 * 119.99852 * 207.67775 * 7 6 5 10 10 N 1.31621 * 119.99994 * 17.37076 * 9 7 6 11 11 Si 1.86797 * 120.00146 * 197.37891 * 9 7 6 12 12 H 1.48507 * 109.46823 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47487 * 119.99518 * 11 9 7 14 14 H 1.48495 * 109.47133 * 240.00070 * 11 9 7 15 15 C 1.46929 * 118.73840 * 53.60530 * 6 5 4 16 16 C 1.53049 * 109.46144 * 240.03212 * 2 1 3 17 17 H 1.09004 * 109.49337 * 298.59178 * 16 2 1 18 18 N 1.46495 * 109.49843 * 58.65556 * 16 2 1 19 19 C 1.34775 * 120.00089 * 205.00093 * 18 16 2 20 20 O 1.21673 * 120.00160 * 0.02562 * 19 18 16 21 21 C 1.46903 * 119.99959 * 180.02562 * 19 18 16 22 22 C 1.36384 * 126.76754 * 359.97438 * 21 19 18 23 23 N 1.35447 * 109.77652 * 180.02562 * 22 21 19 24 24 H 0.97000 * 124.79389 * 180.02562 * 23 22 21 25 25 C 1.38046 * 110.41463 * 0.02562 * 23 22 21 26 26 C 1.39113 * 133.16222 * 180.02562 * 25 23 22 27 27 C 1.37747 * 119.97082 * 180.23083 * 26 25 23 28 28 C 1.38952 * 120.61112 * 359.50876 * 27 26 25 29 29 F 1.35094 * 119.88264 * 180.22937 * 28 27 26 30 30 C 1.37956 * 120.23996 * 0.45592 * 28 27 26 31 31 C 1.39285 * 119.65320 * 359.79287 * 30 28 27 32 32 H 1.09002 * 109.46743 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47302 * 299.97119 * 1 2 3 34 34 H 1.09000 * 109.47765 * 59.97666 * 1 2 3 35 35 H 1.08999 * 109.49758 * 301.33886 * 4 2 1 36 36 H 1.08993 * 109.50356 * 61.43566 * 4 2 1 37 37 H 1.09001 * 109.59089 * 65.15302 * 5 4 2 38 38 H 1.09003 * 109.58632 * 185.42884 * 5 4 2 39 39 H 0.96998 * 119.99795 * 180.02562 * 10 9 7 40 40 H 1.08999 * 109.58559 * 186.60835 * 15 6 5 41 41 H 1.09007 * 109.58232 * 66.18158 * 15 6 5 42 42 H 0.97001 * 119.99773 * 25.00449 * 18 16 2 43 43 H 1.08000 * 125.10673 * 0.03559 * 22 21 19 44 44 H 1.08010 * 120.01457 * 359.95144 * 26 25 23 45 45 H 1.08004 * 119.70164 * 179.69591 * 27 26 25 46 46 H 1.08004 * 120.16701 * 179.81551 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7206 1.2501 5 6 3.5714 -0.6883 1.2642 6 7 4.0679 -1.2486 0.0000 7 6 4.9765 -2.2732 0.0001 8 1 5.0099 -2.9652 0.8285 9 6 5.8547 -2.4221 -1.0646 10 7 6.0604 -1.4203 -1.8931 11 14 6.7444 -4.0444 -1.3216 12 1 6.3428 -5.0027 -0.2605 13 1 6.3870 -4.5997 -2.6516 14 1 8.2109 -3.8205 -1.2563 15 6 3.5713 -0.6886 -1.2643 16 6 2.0398 -0.7208 -1.2501 17 1 1.6974 -1.7556 -1.2385 18 7 1.5255 -0.0489 -2.4460 19 6 1.3970 -0.7326 -3.6003 20 8 1.7078 -1.9079 -3.6492 21 6 0.8817 -0.0587 -4.7997 22 6 0.4939 1.2450 -4.9004 23 7 0.0758 1.5025 -6.1628 24 1 -0.2471 2.3625 -6.4743 25 6 0.1739 0.3681 -6.9433 26 6 -0.1191 0.1024 -8.2770 27 6 0.0835 -1.1608 -8.7877 28 6 0.5893 -2.1758 -7.9847 29 9 0.7866 -3.4081 -8.5020 30 6 0.8864 -1.9309 -6.6600 31 6 0.6809 -0.6588 -6.1314 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5134 0.8902 34 1 -0.3634 0.5142 -0.8897 35 1 1.6572 -0.2205 2.1398 36 1 1.6979 -1.7554 1.2385 37 1 3.9143 0.3412 1.3672 38 1 3.9417 -1.2820 2.0999 39 1 6.6737 -1.5246 -2.6373 40 1 3.9417 -1.2846 -2.0984 41 1 3.9142 0.3410 -1.3675 42 1 1.2774 0.8880 -2.4070 43 1 0.5169 1.9639 -4.0948 44 1 -0.5095 0.8851 -8.9107 45 1 -0.1501 -1.3635 -9.8225 46 1 1.2768 -2.7215 -6.0362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968703068.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:21 Heat of formation + Delta-G solvation = -30.625489 kcal Electronic energy + Delta-G solvation = -30340.424713 eV Core-core repulsion = 26144.101086 eV Total energy + Delta-G solvation = -4196.323627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -49.87955 -42.48059 -40.69815 -38.95089 -37.74739 -36.04628 -34.64638 -33.19333 -32.79193 -31.05441 -30.16074 -29.61073 -28.88911 -25.93390 -24.79702 -24.19690 -23.09914 -22.89573 -22.54833 -21.23824 -20.40729 -19.34776 -18.75861 -18.40454 -17.51579 -17.19258 -17.05487 -16.68340 -16.61008 -16.21714 -15.99373 -15.60680 -15.34324 -15.18010 -15.03927 -14.78567 -14.69232 -14.39891 -14.17087 -14.06062 -13.76122 -13.66102 -13.50134 -13.26115 -13.03610 -12.78201 -12.56844 -12.41037 -12.31640 -12.14404 -12.06319 -11.89901 -11.60416 -11.43394 -11.17341 -10.87811 -10.83210 -10.56052 -10.02196 -9.30421 -8.87494 -8.68556 -7.90780 -5.35564 -0.17168 0.27638 0.95518 1.36460 1.42534 1.49880 1.97885 2.28018 2.40578 2.48172 2.75229 3.23384 3.26129 3.59277 3.71806 3.81719 3.85633 3.91820 4.03609 4.06006 4.19923 4.30069 4.40316 4.50788 4.55766 4.63798 4.66885 4.72626 4.76535 4.95794 4.97101 5.01597 5.13771 5.15566 5.18559 5.21315 5.25613 5.33195 5.42003 5.43858 5.50124 5.52980 5.55935 5.62668 5.83618 5.93789 6.35648 6.54101 6.78908 7.11262 7.48692 7.85560 8.33268 9.13560 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010276 B = 0.003530 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.051629 B = 7929.972150 C = 9871.872015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.085 0.915 4 C -0.117 4.117 5 C 0.136 3.864 6 N -0.610 5.610 7 C -0.262 4.262 8 H 0.067 0.933 9 C -0.049 4.049 10 N -0.929 5.929 11 Si 0.956 3.044 12 H -0.262 1.262 13 H -0.303 1.303 14 H -0.283 1.283 15 C 0.179 3.821 16 C 0.143 3.857 17 H 0.041 0.959 18 N -0.700 5.700 19 C 0.576 3.424 20 O -0.602 6.602 21 C -0.276 4.276 22 C 0.165 3.835 23 N -0.548 5.548 24 H 0.448 0.552 25 C 0.074 3.926 26 C -0.070 4.070 27 C -0.135 4.135 28 C 0.063 3.937 29 F -0.154 7.154 30 C -0.141 4.141 31 C -0.069 4.069 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.025 0.975 38 H 0.053 0.947 39 H 0.246 0.754 40 H 0.038 0.962 41 H 0.003 0.997 42 H 0.412 0.588 43 H 0.233 0.767 44 H 0.184 0.816 45 H 0.171 0.829 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.006 15.253 -9.130 26.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.104 0.896 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.334 5.334 7 C -0.393 4.393 8 H 0.085 0.915 9 C -0.245 4.245 10 N -0.575 5.575 11 Si 0.784 3.216 12 H -0.186 1.186 13 H -0.230 1.230 14 H -0.209 1.209 15 C 0.052 3.948 16 C 0.037 3.963 17 H 0.060 0.940 18 N -0.351 5.351 19 C 0.367 3.633 20 O -0.483 6.483 21 C -0.287 4.287 22 C 0.029 3.971 23 N -0.151 5.151 24 H 0.291 0.709 25 C -0.032 4.032 26 C -0.089 4.089 27 C -0.154 4.154 28 C 0.043 3.957 29 F -0.132 7.132 30 C -0.161 4.161 31 C -0.073 4.073 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.064 0.936 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.249 0.751 43 H 0.249 0.751 44 H 0.201 0.799 45 H 0.189 0.811 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.722 14.516 -9.314 26.200 hybrid contribution 1.238 -1.275 -0.355 1.812 sum -18.484 13.241 -9.669 24.708 Atomic orbital electron populations 1.21769 0.92890 1.01459 1.03051 1.21263 0.96969 0.99501 0.92465 0.89638 1.21980 0.95647 1.00130 0.97887 1.21177 0.93646 0.96264 0.87809 1.44258 1.48078 1.39873 1.01209 1.19522 1.09545 1.04064 1.06138 0.91499 1.25726 0.98696 1.00124 0.99928 1.70163 1.38512 1.30691 1.18136 0.85371 0.78134 0.80771 0.77284 1.18609 1.23039 1.20913 1.20797 0.90012 0.94988 0.89015 1.21429 0.94560 0.95700 0.84648 0.94023 1.45549 1.65880 1.14536 1.09147 1.17791 0.76685 0.85675 0.83188 1.90788 1.52975 1.19135 1.85445 1.19970 1.19330 0.96290 0.93066 1.22710 0.91408 0.94784 0.88191 1.41434 1.54332 1.11583 1.07741 0.70897 1.18356 1.04390 0.86740 0.93731 1.20332 1.00360 0.97313 0.90914 1.21110 1.01618 0.91375 1.01331 1.17724 1.04721 0.81241 0.92026 1.91444 1.93446 1.41360 1.86989 1.20516 1.03407 0.97666 0.94503 1.18745 1.02018 0.93048 0.93520 0.94451 0.90221 0.91321 0.88366 0.93578 0.95737 0.92818 0.94538 0.94364 0.97934 0.75076 0.75052 0.79855 0.81116 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 9.02 71.98 0.65 -2.25 16 2 C -0.08 -2.41 2.27 -10.77 -0.02 -2.43 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.12 -3.70 5.36 30.67 0.16 -3.54 16 5 C 0.14 5.58 6.51 86.36 0.56 6.14 16 6 N -0.61 -32.38 3.00 -699.09 -2.09 -34.47 16 7 C -0.26 -15.57 9.59 84.03 0.81 -14.76 16 8 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 9 C -0.05 -3.00 4.91 84.86 0.42 -2.58 16 10 N -0.93 -59.72 11.19 21.65 0.24 -59.48 16 11 Si 0.96 49.71 29.59 68.60 2.03 51.74 16 12 H -0.26 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.30 -16.38 7.11 99.48 0.71 -15.67 16 14 H -0.28 -14.18 7.11 99.48 0.71 -13.48 16 15 C 0.18 9.24 4.89 86.36 0.42 9.67 16 16 C 0.14 5.70 2.07 45.07 0.09 5.79 16 17 H 0.04 2.01 7.58 -2.38 -0.02 1.99 16 18 N -0.70 -22.51 4.35 -445.91 -1.94 -24.45 16 19 C 0.58 22.38 7.76 86.51 0.67 23.05 16 20 O -0.60 -31.39 15.82 -4.26 -0.07 -31.45 16 21 C -0.28 -8.00 6.27 -19.01 -0.12 -8.12 16 22 C 0.16 2.38 11.33 83.70 0.95 3.33 16 23 N -0.55 -5.72 5.99 -187.05 -1.12 -6.84 16 24 H 0.45 0.24 8.96 -92.71 -0.83 -0.59 16 25 C 0.07 1.39 7.26 38.90 0.28 1.67 16 26 C -0.07 -0.97 10.06 22.36 0.23 -0.75 16 27 C -0.13 -2.52 9.99 22.32 0.22 -2.30 16 28 C 0.06 1.82 7.29 22.37 0.16 1.98 16 29 F -0.15 -4.82 17.26 44.97 0.78 -4.05 16 30 C -0.14 -4.98 9.83 22.45 0.22 -4.76 16 31 C -0.07 -2.09 6.26 -20.08 -0.13 -2.21 16 32 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.22 7.36 -2.39 -0.02 1.20 16 35 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.05 2.17 7.94 -2.39 -0.02 2.15 16 39 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 40 H 0.04 2.42 6.04 -2.39 -0.01 2.40 16 41 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.41 8.68 7.19 -92.71 -0.67 8.02 16 43 H 0.23 0.85 7.38 -2.91 -0.02 0.82 16 44 H 0.18 0.72 8.06 -2.91 -0.02 0.69 16 45 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.10 4.35 7.45 -2.91 -0.02 4.33 16 Total: -1.00 -94.37 378.38 2.94 -91.44 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -0.47 Total: 9.65 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.58 Total: 7.93 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -4.91 Total: -125.24 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.07 Total: -31.45 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.78 Total: -4.05 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.03 Total: 51.74 kcal Total: -94.37 2.94 -91.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968703068.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.810 kcal (2) G-P(sol) polarization free energy of solvation -94.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds