Wall clock time and date at job start Wed Apr 1 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 110.00206 * 2 1 4 4 C 1.54328 * 109.87685 * 238.90365 * 2 1 3 5 5 H 1.09006 * 110.86343 * 144.34523 * 4 2 1 6 6 N 1.46496 * 110.71942 * 21.14305 * 4 2 1 7 7 C 1.36945 * 119.99718 * 160.02194 * 6 4 2 8 8 H 1.07997 * 119.99756 * 359.97438 * 7 6 4 9 9 C 1.38805 * 119.99878 * 179.97438 * 7 6 4 10 10 N 1.31624 * 120.00257 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99929 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47187 * 179.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 300.00154 * 11 9 7 14 14 H 1.48498 * 109.47018 * 60.00200 * 11 9 7 15 15 C 1.55157 * 102.94124 * 262.77564 * 4 2 1 16 16 C 1.54907 * 101.58315 * 324.50162 * 15 4 2 17 17 N 1.47022 * 109.88002 * 121.10128 * 2 1 3 18 18 C 1.34783 * 125.64548 * 300.43215 * 17 2 1 19 19 O 1.21488 * 119.99904 * 0.02562 * 18 17 2 20 20 C 1.48352 * 119.99707 * 180.02562 * 18 17 2 21 21 C 1.41885 * 126.83853 * 179.71317 * 20 18 17 22 22 C 1.36739 * 103.81489 * 179.86193 * 21 20 18 23 23 C 1.47852 * 126.81758 * 180.09506 * 22 21 20 24 24 C 1.41038 * 126.06318 * 180.34296 * 23 22 21 25 25 C 1.35012 * 107.84192 * 179.97438 * 24 23 22 26 26 N 1.35087 * 108.03494 * 0.02562 * 25 24 23 27 27 C 1.46495 * 125.91406 * 180.02562 * 26 25 24 28 28 N 1.31818 * 126.06799 * 0.02682 * 23 22 21 29 29 O 1.34460 * 106.36203 * 0.39811 * 22 21 20 30 30 N 1.20876 * 111.73799 * 359.72882 * 29 22 21 31 31 H 1.08991 * 109.47376 * 181.09476 * 1 2 3 32 32 H 1.09004 * 109.46838 * 301.09832 * 1 2 3 33 33 H 1.08997 * 109.47235 * 61.08835 * 1 2 3 34 34 H 0.96996 * 120.00499 * 340.01924 * 6 4 2 35 35 H 0.97001 * 119.99885 * 179.97438 * 10 9 7 36 36 H 1.08999 * 111.00148 * 82.57800 * 15 4 2 37 37 H 1.08997 * 111.00067 * 206.38814 * 15 4 2 38 38 H 1.09004 * 110.36391 * 155.84646 * 16 15 4 39 39 H 1.08999 * 110.36376 * 278.16831 * 16 15 4 40 40 H 1.07995 * 128.09782 * 359.96391 * 21 20 18 41 41 H 1.07997 * 126.08517 * 359.95831 * 24 23 22 42 42 H 1.08007 * 125.98038 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.47603 * 89.99114 * 27 26 25 44 44 H 1.09000 * 109.47348 * 209.99789 * 27 26 25 45 45 H 1.09009 * 109.47037 * 329.99289 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2428 5 1 2.9651 -0.2844 -1.6211 6 7 1.0291 -0.8025 -2.2875 7 6 1.3876 -1.0416 -3.5874 8 1 2.4264 -1.1906 -3.8423 9 6 0.4158 -1.0923 -4.5772 10 7 -0.8502 -0.9101 -4.2665 11 14 0.9049 -1.4176 -6.3505 12 1 -0.3090 -1.4227 -7.2058 13 1 1.8315 -0.3529 -6.8117 14 1 1.5808 -2.7366 -6.4435 15 6 2.3517 -2.1696 -0.6924 16 6 2.8567 -1.8499 0.7367 17 7 2.0300 -0.7142 1.1839 18 6 1.7754 -0.3846 2.4657 19 8 1.0774 0.5772 2.7185 20 6 2.3474 -1.1962 3.5679 21 6 2.1796 -0.9790 4.9600 22 6 2.8958 -1.9908 5.5370 23 6 3.0616 -2.2456 6.9839 24 6 3.8105 -3.2915 7.5623 25 6 3.7120 -3.1779 8.9040 26 7 2.9344 -2.1076 9.1772 27 6 2.5715 -1.6275 10.5128 28 7 2.5406 -1.5322 7.9623 29 8 3.4248 -2.7040 4.5274 30 7 3.1134 -2.2536 3.4498 31 1 -0.3633 -1.0274 0.0196 32 1 -0.3633 0.5308 0.8800 33 1 -0.3633 0.4968 -0.8995 34 1 0.0962 -0.6683 -2.0586 35 1 -1.5292 -0.9452 -4.9583 36 1 1.4450 -2.7736 -0.6605 37 1 3.1264 -2.6621 -1.2801 38 1 2.7086 -2.7082 1.3921 39 1 3.9091 -1.5669 0.7127 40 1 1.6164 -0.1982 5.4494 41 1 4.3641 -4.0488 7.0272 42 1 4.1741 -3.8288 9.6316 43 1 3.3141 -0.9061 10.8539 44 1 1.5924 -1.1502 10.4738 45 1 2.5380 -2.4692 11.2048 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986324687.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:14 Heat of formation + Delta-G solvation = 125.321175 kcal Electronic energy + Delta-G solvation = -29248.502670 eV Core-core repulsion = 25078.861359 eV Total energy + Delta-G solvation = -4169.641311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.25815 -42.12886 -41.41387 -39.05115 -36.05725 -35.42381 -34.96240 -33.45612 -32.54732 -32.19676 -31.15973 -30.69317 -27.71444 -26.85699 -26.46682 -25.15478 -24.45889 -23.76573 -22.54582 -21.82757 -20.92871 -19.93338 -19.44610 -19.04471 -18.82984 -18.20814 -17.44898 -17.04947 -16.87751 -16.45370 -16.38363 -15.99934 -15.54467 -15.46449 -15.02987 -14.82036 -14.65216 -14.60305 -14.05983 -13.78732 -13.72881 -13.67559 -13.38891 -13.27476 -13.21200 -12.96507 -12.90578 -12.78323 -12.45849 -12.13601 -12.09361 -11.85456 -11.71534 -11.66239 -11.60615 -11.52144 -11.35617 -10.91106 -10.08474 -9.88780 -9.51759 -9.02579 -7.93084 -5.22766 -0.35435 0.14597 1.04675 1.09141 1.49045 1.52475 1.53407 1.58962 1.84764 1.97835 2.00800 2.57191 2.63540 3.14999 3.38027 3.58559 3.61483 3.67154 3.70445 3.88468 3.93306 4.10618 4.12108 4.17604 4.28249 4.34395 4.48291 4.48983 4.58782 4.63041 4.65574 4.75193 4.75899 4.79828 4.81252 4.93805 4.98628 5.14016 5.18365 5.21554 5.37831 5.42034 5.54779 6.05609 6.23277 6.28006 6.44218 6.66981 6.87927 7.35494 8.07236 8.32029 9.30203 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.034391 B = 0.001895 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.977725 B =14770.666747 C =15293.780019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.135 3.865 3 H 0.077 0.923 4 C 0.168 3.832 5 H 0.073 0.927 6 N -0.731 5.731 7 C -0.241 4.241 8 H 0.082 0.918 9 C -0.075 4.075 10 N -0.970 5.970 11 Si 0.975 3.025 12 H -0.300 1.300 13 H -0.278 1.278 14 H -0.277 1.277 15 C -0.142 4.142 16 C 0.106 3.894 17 N -0.594 5.594 18 C 0.606 3.394 19 O -0.553 6.553 20 C -0.030 4.030 21 C -0.153 4.153 22 C 0.055 3.945 23 C 0.111 3.889 24 C -0.260 4.260 25 C 0.075 3.925 26 N -0.362 5.362 27 C 0.088 3.912 28 N -0.300 5.300 29 O 0.152 5.848 30 N -0.321 5.321 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.381 0.619 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.187 0.813 41 H 0.175 0.825 42 H 0.230 0.770 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.049 -6.834 33.287 36.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.095 0.905 4 C 0.058 3.942 5 H 0.091 0.909 6 N -0.373 5.373 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.804 3.196 12 H -0.226 1.226 13 H -0.204 1.204 14 H -0.203 1.203 15 C -0.183 4.183 16 C -0.016 4.016 17 N -0.326 5.326 18 C 0.393 3.607 19 O -0.431 6.431 20 C -0.187 4.187 21 C -0.178 4.178 22 C -0.010 4.010 23 C -0.051 4.051 24 C -0.289 4.289 25 C -0.070 4.070 26 N -0.146 5.146 27 C -0.051 4.051 28 N -0.128 5.128 29 O 0.072 5.928 30 N -0.019 5.019 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.218 0.782 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.204 0.796 41 H 0.192 0.808 42 H 0.247 0.753 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.456 -5.885 32.642 35.430 hybrid contribution -0.562 -0.030 -0.960 1.112 sum 11.894 -5.915 31.682 34.355 Atomic orbital electron populations 1.21853 0.95149 1.01596 1.01877 1.21729 0.94776 0.96004 0.84358 0.90457 1.21372 0.92357 0.93818 0.86651 0.90925 1.42831 1.05687 1.85462 1.03357 1.19618 0.93409 1.39196 0.85011 0.90004 1.25567 0.95365 1.03616 1.02152 1.69821 1.00314 1.58484 1.33436 0.85193 0.76286 0.78263 0.79870 1.22621 1.20393 1.20284 1.23386 1.01508 0.99126 0.94306 1.22609 0.94922 0.88336 0.95773 1.48455 1.49376 1.30730 1.04049 1.16703 0.80151 0.83253 0.80590 1.90761 1.39716 1.29224 1.83391 1.23082 1.02954 0.97248 0.95423 1.22659 1.03194 1.01586 0.90354 1.20949 0.98514 0.92958 0.88593 1.18864 1.01417 0.97800 0.87051 1.21900 1.09219 1.03585 0.94168 1.23291 0.94701 0.91352 0.97668 1.48973 1.37697 1.21954 1.05986 1.22373 1.03266 1.03266 0.76185 1.77613 1.23513 1.21449 0.90212 1.84866 1.54177 1.44462 1.09277 1.74260 1.13542 1.10882 1.03170 0.93411 0.92111 0.91610 0.78246 0.94092 0.92506 0.88933 0.89049 0.89294 0.79557 0.80799 0.75344 0.89036 0.89422 0.85406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.89 7.95 71.98 0.57 -5.32 16 2 C 0.13 5.04 3.48 45.34 0.16 5.20 16 3 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 4 C 0.17 6.60 3.46 46.18 0.16 6.76 16 5 H 0.07 2.76 8.12 -2.38 -0.02 2.74 16 6 N -0.73 -36.24 5.02 -317.32 -1.59 -37.83 16 7 C -0.24 -13.01 9.98 84.03 0.84 -12.18 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 9 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -59.25 13.06 21.65 0.28 -58.96 16 11 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 12 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 C -0.14 -4.83 6.77 31.99 0.22 -4.62 16 16 C 0.11 3.09 6.17 86.86 0.54 3.63 16 17 N -0.59 -20.16 3.08 -790.85 -2.44 -22.59 16 18 C 0.61 21.27 7.66 86.94 0.67 21.93 16 19 O -0.55 -22.24 15.85 -3.68 -0.06 -22.30 16 20 C -0.03 -0.90 7.00 42.85 0.30 -0.60 16 21 C -0.15 -4.00 10.94 22.82 0.25 -3.75 16 22 C 0.05 1.24 7.35 24.47 0.18 1.42 16 23 C 0.11 2.17 7.11 42.38 0.30 2.47 16 24 C -0.26 -3.25 10.77 22.21 0.24 -3.01 16 25 C 0.08 0.53 11.46 83.45 0.96 1.48 16 26 N -0.36 -3.99 4.01 -369.69 -1.48 -5.48 16 27 C 0.09 0.17 11.46 127.77 1.46 1.64 16 28 N -0.30 -5.96 12.60 -48.36 -0.61 -6.57 16 29 O 0.15 3.44 11.20 67.64 0.76 4.20 16 30 N -0.32 -8.51 9.27 -48.99 -0.45 -8.97 16 31 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 32 H 0.06 2.42 6.77 -2.38 -0.02 2.41 16 33 H 0.07 2.86 6.67 -2.39 -0.02 2.85 16 34 H 0.38 20.34 4.92 -92.71 -0.46 19.89 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.09 2.56 6.23 -2.38 -0.01 2.55 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.19 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.23 -0.78 8.06 -2.91 -0.02 -0.81 16 43 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.13 -0.63 8.14 -2.38 -0.02 -0.65 16 Total: -1.00 -75.31 380.13 4.32 -70.99 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.58 Total: 28.48 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 7.30 Total: 11.27 kcal Atomic # 7 Polarization: -134.11 SS G_CDS: -6.29 Total: -140.41 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.70 Total: -18.10 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -75.31 4.32 -70.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986324687.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.312 kcal (2) G-P(sol) polarization free energy of solvation -75.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds