Wall clock time and date at job start Wed Apr 1 2020 05:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.87708 * 2 1 4 4 C 1.54323 * 109.88078 * 121.17488 * 2 1 3 5 5 H 1.09006 * 110.72474 * 23.24072 * 4 2 1 6 6 N 1.46498 * 110.71901 * 259.96909 * 4 2 1 7 7 C 1.36942 * 120.00214 * 155.00035 * 6 4 2 8 8 H 1.08003 * 119.99882 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00355 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99935 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46665 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47210 * 119.99529 * 11 9 7 14 14 H 1.48494 * 109.47353 * 240.00359 * 11 9 7 15 15 C 1.55155 * 102.94410 * 141.60995 * 4 2 1 16 16 C 1.55136 * 101.48406 * 324.32962 * 15 4 2 17 17 N 1.47019 * 109.88216 * 238.97894 * 2 1 3 18 18 C 1.34775 * 125.64749 * 61.60653 * 17 2 1 19 19 O 1.21493 * 120.00248 * 0.02562 * 18 17 2 20 20 C 1.48352 * 120.00307 * 179.97438 * 18 17 2 21 21 C 1.41886 * 126.84716 * 180.32155 * 20 18 17 22 22 C 1.36727 * 103.82244 * 180.13951 * 21 20 18 23 23 C 1.47855 * 126.82233 * 179.87849 * 22 21 20 24 24 C 1.41039 * 126.06716 * 179.97438 * 23 22 21 25 25 C 1.35006 * 107.84327 * 180.15137 * 24 23 22 26 26 N 1.35088 * 108.03300 * 359.61995 * 25 24 23 27 27 C 1.46505 * 125.91093 * 180.20596 * 26 25 24 28 28 N 1.31821 * 126.06476 * 359.68544 * 23 22 21 29 29 O 1.34457 * 106.36093 * 359.62202 * 22 21 20 30 30 N 1.20877 * 111.73562 * 0.25737 * 29 22 21 31 31 H 1.08994 * 109.47471 * 179.56738 * 1 2 3 32 32 H 1.09006 * 109.46543 * 299.56851 * 1 2 3 33 33 H 1.08998 * 109.47022 * 59.56372 * 1 2 3 34 34 H 0.96993 * 120.00274 * 335.00009 * 6 4 2 35 35 H 0.97001 * 120.00060 * 180.02562 * 10 9 7 36 36 H 1.08997 * 111.01016 * 82.57002 * 15 4 2 37 37 H 1.09005 * 111.00585 * 206.42342 * 15 4 2 38 38 H 1.09001 * 110.49692 * 278.45825 * 16 15 4 39 39 H 1.09002 * 110.34128 * 156.06162 * 16 15 4 40 40 H 1.08002 * 128.08938 * 0.02602 * 21 20 18 41 41 H 1.08003 * 126.08033 * 0.05163 * 24 23 22 42 42 H 1.08002 * 125.98607 * 179.88817 * 25 24 23 43 43 H 1.08998 * 109.46935 * 90.00059 * 27 26 25 44 44 H 1.09004 * 109.46998 * 209.99818 * 27 26 25 45 45 H 1.08997 * 109.47349 * 329.99928 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 1.3050 -1.4481 1.6164 6 7 2.4555 0.1929 2.2877 7 6 2.4583 -0.1994 3.5997 8 1 2.1646 -1.2047 3.8634 9 6 2.8374 0.6953 4.5909 10 7 3.1938 1.9210 4.2698 11 14 2.8405 0.1604 6.3807 12 1 2.4004 -1.2548 6.4750 13 1 4.2124 0.2906 6.9339 14 1 1.9104 1.0202 7.1559 15 6 3.2876 -1.5152 0.6904 16 6 2.8098 -1.8816 -0.7394 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4661 19 8 1.1425 0.6264 -2.7176 20 6 2.3752 -1.1718 -3.5695 21 6 2.2386 -0.9311 -4.9611 22 6 2.9353 -1.9555 -5.5397 23 6 3.1190 -2.1959 -6.9870 24 6 3.8422 -3.2588 -7.5669 25 6 3.7747 -3.1218 -8.9083 26 7 3.0342 -2.0251 -9.1799 27 6 2.7090 -1.5168 -10.5149 28 7 2.6315 -1.4577 -7.9643 29 8 3.4249 -2.6977 -4.5311 30 7 3.1076 -2.2528 -3.4529 31 1 -0.3634 -1.0276 -0.0078 32 1 -0.3632 0.5072 0.8939 33 1 -0.3633 0.5206 -0.8860 34 1 2.7189 1.0959 2.0510 35 1 3.4591 2.5461 4.9624 36 1 4.1654 -0.8699 0.6592 37 1 3.4851 -2.4129 1.2764 38 1 2.1800 -2.7709 -0.7152 39 1 3.6655 -2.0395 -1.3960 40 1 1.7069 -0.1277 -5.4493 41 1 4.3595 -4.0422 -7.0329 42 1 4.2292 -3.7769 -9.6368 43 1 1.7783 -1.9679 -10.8587 44 1 2.5941 -0.4336 -10.4732 45 1 3.5128 -1.7706 -11.2060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986324690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:27 Heat of formation + Delta-G solvation = 139.849930 kcal Electronic energy + Delta-G solvation = -29138.734433 eV Core-core repulsion = 24969.723136 eV Total energy + Delta-G solvation = -4169.011297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.21762 -41.60369 -39.93476 -37.46920 -34.62357 -34.33205 -33.90050 -32.03422 -31.36987 -30.85976 -30.60166 -29.13749 -27.25123 -25.20223 -25.09067 -23.60029 -23.00342 -22.57550 -21.45376 -21.23854 -20.04800 -18.87565 -18.01011 -17.92696 -17.27991 -17.04360 -16.60237 -15.99434 -15.92268 -15.12496 -14.95938 -14.63501 -14.26952 -14.15186 -13.92430 -13.61969 -13.40731 -13.36077 -13.16222 -12.98691 -12.93887 -12.74727 -12.19166 -12.04224 -11.85287 -11.42837 -11.27245 -11.11999 -11.03638 -10.83754 -10.82171 -10.61114 -10.58205 -10.20922 -10.10776 -9.93270 -9.71960 -9.43829 -8.94748 -8.91583 -8.46553 -7.03044 -5.81226 -3.11732 0.54291 1.23661 1.56991 1.68490 2.60641 2.65206 2.89181 3.20899 3.41714 3.47417 3.49698 3.80056 4.03200 4.05880 4.37277 4.55279 4.59526 4.70520 4.74511 4.87522 4.88915 5.07656 5.11922 5.25259 5.26278 5.40435 5.45630 5.55103 5.63782 5.67616 5.72383 5.83382 5.91988 5.99526 6.08892 6.16194 6.32953 6.40185 6.45966 6.60117 6.61751 6.69232 6.92521 7.01678 7.60109 7.67075 7.77333 8.16947 8.35911 9.47587 10.01595 10.36584 11.40958 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.001883 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.071966 B =14862.433534 C =15309.960988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.082 0.918 4 C 0.177 3.823 5 H 0.069 0.931 6 N -0.713 5.713 7 C -0.244 4.244 8 H 0.073 0.927 9 C -0.010 4.010 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.096 3.904 17 N -0.592 5.592 18 C 0.607 3.393 19 O -0.525 6.525 20 C -0.014 4.014 21 C -0.140 4.140 22 C 0.034 3.966 23 C 0.140 3.860 24 C -0.244 4.244 25 C 0.058 3.942 26 N -0.365 5.365 27 C 0.099 3.901 28 N -0.260 5.260 29 O 0.135 5.865 30 N -0.317 5.317 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.386 0.614 35 H 0.256 0.744 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.186 0.814 41 H 0.160 0.840 42 H 0.182 0.818 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.847 -12.219 -30.870 33.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.100 0.900 4 C 0.065 3.935 5 H 0.087 0.913 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.091 0.909 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.027 4.027 17 N -0.325 5.325 18 C 0.392 3.608 19 O -0.400 6.400 20 C -0.172 4.172 21 C -0.164 4.164 22 C -0.030 4.030 23 C -0.024 4.024 24 C -0.273 4.273 25 C -0.087 4.087 26 N -0.149 5.149 27 C -0.042 4.042 28 N -0.086 5.086 29 O 0.058 5.942 30 N -0.016 5.016 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.203 0.797 41 H 0.177 0.823 42 H 0.200 0.800 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.157 -11.306 -30.212 32.259 hybrid contribution 0.387 -0.222 0.471 0.649 sum 0.544 -11.529 -29.741 31.902 Atomic orbital electron populations 1.22060 0.94601 1.01760 1.02913 1.22076 0.94669 0.97037 0.83942 0.90030 1.21254 0.93676 0.91580 0.86988 0.91266 1.42349 1.79230 1.11866 1.01908 1.19269 1.38352 0.96973 0.82858 0.90871 1.24770 1.01915 0.95858 0.98132 1.69677 1.51165 1.04642 1.32217 0.86101 0.77200 0.77637 0.85119 1.20477 1.21837 1.21824 1.23635 1.01285 1.01800 0.92957 1.22635 0.95294 0.87540 0.97233 1.48416 1.51136 1.28528 1.04393 1.16428 0.80597 0.83526 0.80261 1.90789 1.39958 1.26360 1.82919 1.23412 1.02126 0.96005 0.95620 1.22639 1.02142 1.00599 0.91040 1.20754 1.00731 0.93667 0.87888 1.18798 0.99803 0.95883 0.87936 1.21575 1.09511 1.03226 0.93033 1.22554 0.97185 0.91437 0.97535 1.48556 1.39745 1.20773 1.05846 1.21980 1.02486 1.02061 0.77650 1.77699 1.21905 1.20242 0.88755 1.84896 1.55886 1.43935 1.09485 1.74308 1.13335 1.11656 1.02319 0.92995 0.90804 0.91929 0.77959 0.93422 0.90611 0.90373 0.91482 0.89963 0.79681 0.82273 0.80047 0.90246 0.88862 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.10 37.16 0.34 -2.34 16 2 C 0.13 2.33 3.21 -66.95 -0.21 2.12 16 3 H 0.08 1.67 7.72 -51.93 -0.40 1.27 16 4 C 0.18 3.48 3.14 -66.10 -0.21 3.28 16 5 H 0.07 1.35 7.80 -51.93 -0.41 0.95 16 6 N -0.71 -17.51 5.22 -51.65 -0.27 -17.78 16 7 C -0.24 -6.58 9.96 -15.06 -0.15 -6.73 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 11 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 C -0.16 -2.70 6.78 -24.46 -0.17 -2.87 16 16 C 0.10 1.47 6.19 -2.41 -0.01 1.45 16 17 N -0.59 -10.13 3.06 -163.79 -0.50 -10.63 16 18 C 0.61 10.58 7.67 -12.10 -0.09 10.48 16 19 O -0.52 -10.33 15.98 5.37 0.09 -10.25 16 20 C -0.01 -0.20 7.00 -82.62 -0.58 -0.78 16 21 C -0.14 -1.81 10.94 -38.73 -0.42 -2.23 16 22 C 0.03 0.40 7.35 -36.19 -0.27 0.13 16 23 C 0.14 1.44 7.11 -82.88 -0.59 0.85 16 24 C -0.24 -1.83 10.77 -39.67 -0.43 -2.25 16 25 C 0.06 0.31 11.46 -17.27 -0.20 0.11 16 26 N -0.37 -2.48 4.01 -68.20 -0.27 -2.75 16 27 C 0.10 0.24 11.46 59.85 0.69 0.93 16 28 N -0.26 -2.70 12.60 33.36 0.42 -2.28 16 29 O 0.13 1.61 11.20 16.07 0.18 1.79 16 30 N -0.32 -4.36 9.27 33.35 0.31 -4.05 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 1.10 6.88 -51.93 -0.36 0.75 16 34 H 0.39 10.21 7.57 -40.82 -0.31 9.91 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.21 6.21 -51.93 -0.32 0.89 16 40 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 41 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 42 H 0.18 0.20 8.06 -52.49 -0.42 -0.23 16 43 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 44 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -34.02 384.55 -6.94 -40.96 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.99 Total: 7.44 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -2.40 Total: 1.75 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.41 Total: -64.57 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.27 Total: -8.46 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.02 -6.94 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986324690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.811 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds