Wall clock time and date at job start Wed Apr 1 2020 05:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.87708 * 2 1 4 4 C 1.54323 * 109.88078 * 121.17488 * 2 1 3 5 5 H 1.09006 * 110.72474 * 23.24072 * 4 2 1 6 6 N 1.46498 * 110.71901 * 259.96909 * 4 2 1 7 7 C 1.36942 * 120.00214 * 155.00035 * 6 4 2 8 8 H 1.08003 * 119.99882 * 359.97438 * 7 6 4 9 9 C 1.38807 * 120.00355 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99935 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46665 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47210 * 119.99529 * 11 9 7 14 14 H 1.48494 * 109.47353 * 240.00359 * 11 9 7 15 15 C 1.55155 * 102.94410 * 141.60995 * 4 2 1 16 16 C 1.55136 * 101.48406 * 324.32962 * 15 4 2 17 17 N 1.47019 * 109.88216 * 238.97894 * 2 1 3 18 18 C 1.34775 * 125.64749 * 61.60653 * 17 2 1 19 19 O 1.21493 * 120.00248 * 0.02562 * 18 17 2 20 20 C 1.48352 * 120.00307 * 179.97438 * 18 17 2 21 21 C 1.41886 * 126.84716 * 180.32155 * 20 18 17 22 22 C 1.36727 * 103.82244 * 180.13951 * 21 20 18 23 23 C 1.47855 * 126.82233 * 179.87849 * 22 21 20 24 24 C 1.41039 * 126.06716 * 179.97438 * 23 22 21 25 25 C 1.35006 * 107.84327 * 180.15137 * 24 23 22 26 26 N 1.35088 * 108.03300 * 359.61995 * 25 24 23 27 27 C 1.46505 * 125.91093 * 180.20596 * 26 25 24 28 28 N 1.31821 * 126.06476 * 359.68544 * 23 22 21 29 29 O 1.34457 * 106.36093 * 359.62202 * 22 21 20 30 30 N 1.20877 * 111.73562 * 0.25737 * 29 22 21 31 31 H 1.08994 * 109.47471 * 179.56738 * 1 2 3 32 32 H 1.09006 * 109.46543 * 299.56851 * 1 2 3 33 33 H 1.08998 * 109.47022 * 59.56372 * 1 2 3 34 34 H 0.96993 * 120.00274 * 335.00009 * 6 4 2 35 35 H 0.97001 * 120.00060 * 180.02562 * 10 9 7 36 36 H 1.08997 * 111.01016 * 82.57002 * 15 4 2 37 37 H 1.09005 * 111.00585 * 206.42342 * 15 4 2 38 38 H 1.09001 * 110.49692 * 278.45825 * 16 15 4 39 39 H 1.09002 * 110.34128 * 156.06162 * 16 15 4 40 40 H 1.08002 * 128.08938 * 0.02602 * 21 20 18 41 41 H 1.08003 * 126.08033 * 0.05163 * 24 23 22 42 42 H 1.08002 * 125.98607 * 179.88817 * 25 24 23 43 43 H 1.08998 * 109.46935 * 90.00059 * 27 26 25 44 44 H 1.09004 * 109.46998 * 209.99818 * 27 26 25 45 45 H 1.08997 * 109.47349 * 329.99928 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0548 -0.7512 1.2417 5 1 1.3050 -1.4481 1.6164 6 7 2.4555 0.1929 2.2877 7 6 2.4583 -0.1994 3.5997 8 1 2.1646 -1.2047 3.8634 9 6 2.8374 0.6953 4.5909 10 7 3.1938 1.9210 4.2698 11 14 2.8405 0.1604 6.3807 12 1 2.4004 -1.2548 6.4750 13 1 4.2124 0.2906 6.9339 14 1 1.9104 1.0202 7.1559 15 6 3.2876 -1.5152 0.6904 16 6 2.8098 -1.8816 -0.7394 17 7 2.0300 -0.7125 -1.1848 18 6 1.8074 -0.3588 -2.4661 19 8 1.1425 0.6264 -2.7176 20 6 2.3752 -1.1718 -3.5695 21 6 2.2386 -0.9311 -4.9611 22 6 2.9353 -1.9555 -5.5397 23 6 3.1190 -2.1959 -6.9870 24 6 3.8422 -3.2588 -7.5669 25 6 3.7747 -3.1218 -8.9083 26 7 3.0342 -2.0251 -9.1799 27 6 2.7090 -1.5168 -10.5149 28 7 2.6315 -1.4577 -7.9643 29 8 3.4249 -2.6977 -4.5311 30 7 3.1076 -2.2528 -3.4529 31 1 -0.3634 -1.0276 -0.0078 32 1 -0.3632 0.5072 0.8939 33 1 -0.3633 0.5206 -0.8860 34 1 2.7189 1.0959 2.0510 35 1 3.4591 2.5461 4.9624 36 1 4.1654 -0.8699 0.6592 37 1 3.4851 -2.4129 1.2764 38 1 2.1800 -2.7709 -0.7152 39 1 3.6655 -2.0395 -1.3960 40 1 1.7069 -0.1277 -5.4493 41 1 4.3595 -4.0422 -7.0329 42 1 4.2292 -3.7769 -9.6368 43 1 1.7783 -1.9679 -10.8587 44 1 2.5941 -0.4336 -10.4732 45 1 3.5128 -1.7706 -11.2060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986324690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:26 Heat of formation + Delta-G solvation = 117.389118 kcal Electronic energy + Delta-G solvation = -29139.708407 eV Core-core repulsion = 24969.723136 eV Total energy + Delta-G solvation = -4169.985271 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.26342 -42.13045 -41.36528 -38.97201 -36.03034 -35.43439 -34.98134 -33.40728 -32.59239 -32.26130 -31.16202 -30.85738 -27.71548 -26.92179 -26.32736 -24.86707 -24.41677 -23.70256 -22.47439 -21.82869 -21.55338 -20.03373 -19.18308 -19.04794 -18.79437 -18.21248 -17.43024 -17.37730 -16.63802 -16.44085 -16.36022 -15.80477 -15.52413 -15.41313 -15.00473 -14.86333 -14.64524 -14.60790 -14.19607 -13.79245 -13.72938 -13.70246 -13.43613 -13.30137 -13.23313 -13.00890 -12.84224 -12.65589 -12.51203 -12.20937 -12.07064 -11.85625 -11.76223 -11.73169 -11.62164 -11.52415 -11.41112 -10.93657 -10.08692 -9.88780 -9.51945 -9.05129 -7.94607 -5.25143 -0.35789 0.14089 1.04530 1.08933 1.48433 1.50344 1.52929 1.60569 1.84228 1.97524 2.00468 2.55902 2.63113 3.14740 3.37245 3.57895 3.60666 3.65622 3.69884 3.86544 3.97694 4.10173 4.13444 4.17614 4.26716 4.35385 4.44796 4.48890 4.60044 4.62807 4.64831 4.71775 4.75624 4.79810 4.86805 4.93786 4.97963 5.15862 5.16627 5.22195 5.37289 5.37788 5.54241 6.05500 6.22483 6.26071 6.44085 6.66540 6.87430 7.32063 8.02236 8.26998 9.28967 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.032322 B = 0.001883 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.071966 B =14862.433534 C =15309.960988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.131 3.869 3 H 0.054 0.946 4 C 0.174 3.826 5 H 0.078 0.922 6 N -0.726 5.726 7 C -0.238 4.238 8 H 0.085 0.915 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.261 1.261 13 H -0.296 1.296 14 H -0.297 1.297 15 C -0.146 4.146 16 C 0.106 3.894 17 N -0.594 5.594 18 C 0.605 3.395 19 O -0.555 6.555 20 C -0.030 4.030 21 C -0.154 4.154 22 C 0.055 3.945 23 C 0.111 3.889 24 C -0.259 4.259 25 C 0.075 3.925 26 N -0.362 5.362 27 C 0.088 3.912 28 N -0.300 5.300 29 O 0.152 5.848 30 N -0.321 5.321 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.372 0.628 35 H 0.250 0.750 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.187 0.813 41 H 0.175 0.825 42 H 0.230 0.770 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.357 -15.363 -33.193 36.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 H 0.073 0.927 4 C 0.064 3.936 5 H 0.096 0.904 6 N -0.365 5.365 7 C -0.369 4.369 8 H 0.103 0.897 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.804 3.196 12 H -0.185 1.185 13 H -0.223 1.223 14 H -0.224 1.224 15 C -0.187 4.187 16 C -0.016 4.016 17 N -0.326 5.326 18 C 0.392 3.608 19 O -0.433 6.433 20 C -0.187 4.187 21 C -0.178 4.178 22 C -0.010 4.010 23 C -0.051 4.051 24 C -0.288 4.288 25 C -0.070 4.070 26 N -0.146 5.146 27 C -0.051 4.051 28 N -0.128 5.128 29 O 0.073 5.927 30 N -0.018 5.018 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.204 0.796 41 H 0.192 0.808 42 H 0.247 0.753 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.650 -14.504 -32.544 35.636 hybrid contribution 0.249 0.684 0.910 1.165 sum 0.899 -13.821 -31.634 34.533 Atomic orbital electron populations 1.21959 0.93563 1.02632 1.02188 1.21835 0.95406 0.95681 0.84341 0.92749 1.21417 0.94852 0.91065 0.86292 0.90378 1.42498 1.79569 1.12063 1.02393 1.19684 1.36231 0.97144 0.83845 0.89720 1.25587 1.02848 0.96061 1.02234 1.69843 1.53316 1.05896 1.33060 0.85056 0.76538 0.77927 0.80108 1.18545 1.22329 1.22418 1.23461 0.99243 1.01584 0.94381 1.22668 0.95783 0.87400 0.95760 1.48438 1.51262 1.28865 1.04056 1.16724 0.80099 0.83327 0.80651 1.90763 1.41344 1.27733 1.83440 1.23073 1.03502 0.96707 0.95411 1.22655 1.03285 1.01547 0.90351 1.20942 0.98996 0.92417 0.88611 1.18865 1.01677 0.97562 0.87039 1.21900 1.09739 1.03056 0.94154 1.23290 0.95326 0.90702 0.97690 1.48975 1.38849 1.20811 1.05975 1.22373 1.04583 1.01922 0.76209 1.77615 1.23287 1.21698 0.90202 1.84866 1.55184 1.43428 1.09272 1.74254 1.13183 1.11251 1.03139 0.91246 0.91499 0.92625 0.79609 0.94100 0.92442 0.88797 0.89267 0.89022 0.79593 0.80781 0.75337 0.89010 0.89435 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.10 71.98 0.66 -4.39 16 2 C 0.13 4.94 3.21 45.34 0.15 5.08 16 3 H 0.05 2.35 7.72 -2.39 -0.02 2.33 16 4 C 0.17 6.79 3.14 46.18 0.14 6.94 16 5 H 0.08 2.94 7.80 -2.38 -0.02 2.92 16 6 N -0.73 -36.20 5.22 -317.33 -1.66 -37.86 16 7 C -0.24 -12.81 9.96 84.03 0.84 -11.97 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 10 N -0.97 -59.62 13.06 21.65 0.28 -59.33 16 11 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 12 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 13 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 14 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 15 C -0.15 -4.93 6.78 32.07 0.22 -4.71 16 16 C 0.11 3.10 6.19 86.94 0.54 3.63 16 17 N -0.59 -20.31 3.06 -790.42 -2.42 -22.73 16 18 C 0.61 21.43 7.67 86.94 0.67 22.10 16 19 O -0.56 -22.63 15.98 -3.69 -0.06 -22.69 16 20 C -0.03 -0.90 7.00 42.85 0.30 -0.60 16 21 C -0.15 -4.03 10.94 22.82 0.25 -3.79 16 22 C 0.06 1.25 7.35 24.46 0.18 1.43 16 23 C 0.11 2.17 7.11 42.38 0.30 2.47 16 24 C -0.26 -3.24 10.77 22.21 0.24 -3.01 16 25 C 0.08 0.53 11.46 83.45 0.96 1.48 16 26 N -0.36 -4.00 4.01 -369.70 -1.48 -5.48 16 27 C 0.09 0.18 11.46 127.77 1.46 1.64 16 28 N -0.30 -5.98 12.60 -48.36 -0.61 -6.59 16 29 O 0.15 3.45 11.20 67.67 0.76 4.21 16 30 N -0.32 -8.52 9.27 -48.99 -0.45 -8.97 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.05 2.00 6.88 -2.39 -0.02 1.99 16 34 H 0.37 20.46 7.57 -92.71 -0.70 19.76 16 35 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.09 2.56 6.21 -2.39 -0.01 2.55 16 40 H 0.19 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.23 -0.79 8.06 -2.91 -0.02 -0.81 16 43 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 44 H 0.09 0.30 8.14 -2.39 -0.02 0.29 16 45 H 0.13 -0.63 8.14 -2.39 -0.02 -0.65 16 Total: -1.00 -75.84 384.55 4.08 -71.77 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.33 Total: 27.44 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 7.36 Total: 12.52 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -6.34 Total: -140.97 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.70 Total: -18.48 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -75.84 4.08 -71.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986324690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.155 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds