Wall clock time and date at job start Wed Apr 1 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.87651 * 2 1 4 4 C 1.54325 * 109.88242 * 238.97825 * 2 1 3 5 5 H 1.09003 * 110.71408 * 99.87488 * 4 2 1 6 6 N 1.46493 * 110.87407 * 336.67370 * 4 2 1 7 7 C 1.36933 * 120.00093 * 159.93159 * 6 4 2 8 8 H 1.08001 * 120.00060 * 0.02562 * 7 6 4 9 9 C 1.38818 * 120.00063 * 179.97438 * 7 6 4 10 10 N 1.31612 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99787 * 180.02562 * 9 7 6 12 12 H 1.48493 * 109.47301 * 60.00214 * 11 9 7 13 13 H 1.48500 * 109.46929 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47341 * 299.99732 * 11 9 7 15 15 C 1.55158 * 102.94260 * 218.23504 * 4 2 1 16 16 C 1.54903 * 101.58284 * 35.50646 * 15 4 2 17 17 N 1.47030 * 110.01182 * 121.09679 * 2 1 3 18 18 C 1.34775 * 125.64686 * 298.47048 * 17 2 1 19 19 O 1.21541 * 119.99972 * 354.84855 * 18 17 2 20 20 C 1.47904 * 119.99908 * 174.85911 * 18 17 2 21 21 C 1.39606 * 121.00752 * 316.36353 * 20 18 17 22 22 C 1.39087 * 119.23114 * 179.73494 * 21 20 18 23 23 O 1.35730 * 119.27308 * 180.27576 * 22 21 20 24 24 N 1.31864 * 121.45253 * 0.55517 * 22 21 20 25 25 C 1.33081 * 121.83280 * 359.71614 * 24 22 21 26 26 N 1.35726 * 133.21246 * 180.02562 * 25 24 22 27 27 C 1.30208 * 109.68385 * 179.97438 * 26 25 24 28 28 N 1.35964 * 110.07564 * 0.02562 * 27 26 25 29 29 C 1.46497 * 126.36268 * 179.97438 * 28 27 26 30 30 C 1.37609 * 107.27041 * 359.97438 * 28 27 26 31 31 H 1.08999 * 109.46944 * 181.01688 * 1 2 3 32 32 H 1.08996 * 109.47191 * 301.01865 * 1 2 3 33 33 H 1.08998 * 109.46999 * 61.01615 * 1 2 3 34 34 H 0.97003 * 120.00349 * 339.92916 * 6 4 2 35 35 H 0.97001 * 119.99617 * 180.02562 * 10 9 7 36 36 H 1.09008 * 111.00402 * 277.42782 * 15 4 2 37 37 H 1.09002 * 111.00295 * 153.58151 * 15 4 2 38 38 H 1.09002 * 110.36647 * 81.82710 * 16 15 4 39 39 H 1.09001 * 110.36908 * 204.15204 * 16 15 4 40 40 H 1.07998 * 120.38644 * 359.97438 * 21 20 18 41 41 H 0.96694 * 113.99744 * 270.27680 * 23 22 21 42 42 H 1.07995 * 124.95865 * 180.02562 * 27 26 25 43 43 H 1.09006 * 109.47071 * 263.83479 * 29 28 27 44 44 H 1.09002 * 109.47207 * 23.84097 * 29 28 27 45 45 H 1.09004 * 109.47338 * 143.83983 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7479 -1.2437 5 1 2.3504 -0.0433 -2.0211 6 7 1.0503 -1.6857 -1.7513 7 6 1.1260 -2.1378 -3.0417 8 1 1.9265 -1.8034 -3.6850 9 6 0.1745 -3.0268 -3.5225 10 7 -0.8007 -3.4347 -2.7384 11 14 0.2782 -3.6442 -5.2825 12 1 1.5666 -4.3548 -5.4828 13 1 -0.8470 -4.5764 -5.5472 14 1 0.1976 -2.4926 -6.2166 15 6 3.2900 -1.5102 -0.6953 16 6 2.8195 -1.8770 0.7343 17 7 2.0331 -0.7135 1.1830 18 6 1.8113 -0.3626 2.4652 19 8 1.2242 0.6708 2.7196 20 6 2.2826 -1.2348 3.5628 21 6 2.1165 -2.6197 3.5027 22 6 2.5787 -3.4054 4.5532 23 8 2.4227 -4.7524 4.4931 24 7 3.1603 -2.8701 5.6087 25 6 3.3394 -1.5562 5.7205 26 7 3.8958 -0.7723 6.6788 27 6 3.8303 0.4766 6.3164 28 7 3.2275 0.5792 5.1020 29 6 2.9699 1.8170 4.3620 30 6 2.9042 -0.6957 4.6974 31 1 -0.3633 -1.0275 0.0182 32 1 -0.3633 0.5295 0.8807 33 1 -0.3633 0.4980 -0.8989 34 1 0.3316 -1.9864 -1.1735 35 1 -1.4653 -4.0562 -3.0744 36 1 4.1665 -0.8628 -0.6642 37 1 3.4888 -2.4063 -1.2832 38 1 2.1955 -2.7704 0.7107 39 1 3.6778 -2.0298 1.3886 40 1 1.6381 -3.0760 2.6487 41 1 1.5912 -5.0692 4.8716 42 1 4.2008 1.3093 6.8958 43 1 1.9504 2.1507 4.5557 44 1 3.6715 2.5861 4.6850 45 1 3.0961 1.6353 3.2947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986350523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:50 Heat of formation + Delta-G solvation = 29.416920 kcal Electronic energy + Delta-G solvation = -31073.386021 eV Core-core repulsion = 26899.585990 eV Total energy + Delta-G solvation = -4173.800032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.61947 -41.45708 -40.32614 -39.02881 -37.36137 -35.81443 -35.39306 -33.82001 -32.84638 -32.25487 -30.55370 -30.34401 -28.03168 -26.85426 -26.18059 -25.46725 -24.15683 -23.93118 -22.50120 -21.07992 -20.39203 -19.54860 -19.34823 -19.10798 -18.27115 -18.13752 -17.66184 -17.20865 -16.60846 -16.40475 -16.01686 -15.91779 -15.65544 -15.49979 -15.18177 -14.85787 -14.68025 -14.40147 -14.36658 -14.13939 -13.87528 -13.37061 -13.21442 -12.98987 -12.91459 -12.85692 -12.84083 -12.55803 -12.42996 -12.27390 -12.09786 -12.00927 -11.85980 -11.66910 -11.46381 -11.37408 -10.89872 -10.38230 -9.94505 -9.77845 -9.60351 -8.98001 -7.90379 -5.18061 -0.76240 -0.11046 1.19013 1.43092 1.52318 1.52955 1.58827 1.63712 1.74609 2.16511 2.52486 2.59315 2.96330 3.24269 3.30782 3.42478 3.64317 3.68414 3.82916 3.91388 3.92480 4.04425 4.08958 4.21375 4.24417 4.34830 4.39058 4.45340 4.51518 4.60457 4.68111 4.74589 4.80802 4.90077 4.98770 5.03505 5.13659 5.17398 5.29268 5.33245 5.41857 5.59283 5.92550 6.30332 6.30901 6.31762 6.63134 6.81362 6.82417 7.39417 8.12513 8.35828 9.32454 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.016428 B = 0.003115 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.949262 B = 8987.623068 C =10028.676986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.136 3.864 3 H 0.093 0.907 4 C 0.165 3.835 5 H 0.076 0.924 6 N -0.724 5.724 7 C -0.235 4.235 8 H 0.080 0.920 9 C -0.070 4.070 10 N -0.967 5.967 11 Si 0.966 3.034 12 H -0.279 1.279 13 H -0.303 1.303 14 H -0.280 1.280 15 C -0.147 4.147 16 C 0.107 3.893 17 N -0.592 5.592 18 C 0.575 3.425 19 O -0.549 6.549 20 C -0.052 4.052 21 C -0.136 4.136 22 C 0.332 3.668 23 O -0.479 6.479 24 N -0.484 5.484 25 C 0.251 3.749 26 N -0.527 5.527 27 C 0.314 3.686 28 N -0.479 5.479 29 C 0.084 3.916 30 C 0.013 3.987 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.378 0.622 35 H 0.249 0.751 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.164 0.836 41 H 0.423 0.577 42 H 0.283 0.717 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.679 10.568 15.452 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.033 3.967 3 H 0.111 0.889 4 C 0.055 3.945 5 H 0.094 0.906 6 N -0.366 5.366 7 C -0.367 4.367 8 H 0.098 0.902 9 C -0.262 4.262 10 N -0.617 5.617 11 Si 0.796 3.204 12 H -0.205 1.205 13 H -0.229 1.229 14 H -0.207 1.207 15 C -0.188 4.188 16 C -0.015 4.015 17 N -0.324 5.324 18 C 0.363 3.637 19 O -0.428 6.428 20 C -0.066 4.066 21 C -0.159 4.159 22 C 0.141 3.859 23 O -0.288 6.288 24 N -0.206 5.206 25 C 0.008 3.992 26 N -0.249 5.249 27 C 0.027 3.973 28 N -0.167 5.167 29 C -0.056 4.056 30 C -0.103 4.103 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.213 0.787 35 H 0.058 0.942 36 H 0.108 0.892 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.181 0.819 41 H 0.285 0.715 42 H 0.298 0.702 43 H 0.098 0.902 44 H 0.152 0.848 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.528 10.387 16.518 22.172 hybrid contribution -1.764 -0.379 -1.982 2.680 sum 8.764 10.008 14.536 19.705 Atomic orbital electron populations 1.21785 0.95156 1.01257 1.01531 1.21895 0.94375 0.96422 0.83991 0.88914 1.21403 0.89079 0.91330 0.92714 0.90620 1.42688 1.30344 1.52253 1.11346 1.19549 1.07964 1.19530 0.89632 0.90207 1.25425 0.97967 1.01429 1.01403 1.69789 1.16961 1.38065 1.36921 0.85329 0.76538 0.77663 0.80886 1.20511 1.22947 1.20665 1.23389 0.98978 1.02072 0.94383 1.22431 0.94740 0.87896 0.96468 1.48546 1.50771 1.28756 1.04280 1.17690 0.79663 0.84920 0.81417 1.90749 1.43277 1.25289 1.83512 1.19055 1.00766 0.93585 0.93212 1.22260 1.01038 0.91176 1.01404 1.18555 0.94137 0.85125 0.88049 1.84802 1.46891 1.14729 1.82421 1.65857 1.16073 1.12210 1.26508 1.19207 1.00341 0.88115 0.91557 1.70371 1.24967 1.01694 1.27848 1.26793 0.90963 0.96258 0.83245 1.45443 1.47109 1.05702 1.18412 1.22368 1.04429 0.82311 0.96532 1.19515 1.04876 0.88335 0.97573 0.93919 0.92656 0.91767 0.78683 0.94246 0.89153 0.90520 0.91783 0.89782 0.81856 0.71518 0.70194 0.90182 0.84789 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.74 8.47 71.98 0.61 -4.13 16 2 C 0.14 4.11 3.40 45.34 0.15 4.26 16 3 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 4 C 0.16 5.51 3.45 46.18 0.16 5.67 16 5 H 0.08 2.46 8.12 -2.39 -0.02 2.44 16 6 N -0.72 -32.08 4.67 -317.33 -1.48 -33.56 16 7 C -0.23 -11.78 9.98 84.04 0.84 -10.94 16 8 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 9 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 10 N -0.97 -55.97 13.06 21.65 0.28 -55.68 16 11 Si 0.97 43.81 29.55 68.60 2.03 45.83 16 12 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 13 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 C -0.15 -4.17 6.77 31.98 0.22 -3.96 16 16 C 0.11 2.90 5.38 86.85 0.47 3.37 16 17 N -0.59 -16.72 3.07 -791.35 -2.43 -19.15 16 18 C 0.57 16.52 6.35 86.80 0.55 17.08 16 19 O -0.55 -17.11 13.07 -3.84 -0.05 -17.16 16 20 C -0.05 -1.43 5.24 -19.92 -0.10 -1.53 16 21 C -0.14 -3.51 8.39 22.80 0.19 -3.31 16 22 C 0.33 8.92 7.71 84.89 0.65 9.58 16 23 O -0.48 -10.79 13.55 -90.54 -1.23 -12.02 16 24 N -0.48 -15.09 10.41 -307.36 -3.20 -18.29 16 25 C 0.25 7.44 8.37 134.30 1.12 8.57 16 26 N -0.53 -13.49 11.27 -196.93 -2.22 -15.71 16 27 C 0.31 4.81 12.49 180.05 2.25 7.06 16 28 N -0.48 -9.13 3.19 -542.68 -1.73 -10.86 16 29 C 0.08 1.16 9.44 127.77 1.21 2.37 16 30 C 0.01 0.34 6.77 39.28 0.27 0.60 16 31 H 0.04 1.67 6.20 -2.39 -0.01 1.66 16 32 H 0.05 1.84 7.08 -2.39 -0.02 1.83 16 33 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.38 18.37 5.49 -92.71 -0.51 17.86 16 35 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.06 1.94 7.23 -2.39 -0.02 1.92 16 39 H 0.08 2.02 7.51 -2.39 -0.02 2.00 16 40 H 0.16 4.00 6.60 -2.91 -0.02 3.98 16 41 H 0.42 5.16 9.06 -74.06 -0.67 4.49 16 42 H 0.28 0.48 8.06 -2.91 -0.02 0.45 16 43 H 0.08 1.26 7.80 -2.38 -0.02 1.24 16 44 H 0.13 0.56 8.13 -2.39 -0.02 0.54 16 45 H 0.07 1.26 6.22 -2.38 -0.01 1.24 16 Total: -1.00 -74.59 367.09 -1.09 -75.68 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.11 Total: 29.51 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 9.05 Total: 31.41 kcal Atomic # 7 Polarization: -142.48 SS G_CDS: -10.78 Total: -153.26 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.28 Total: -29.18 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -74.59 -1.09 -75.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986350523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.099 kcal (2) G-P(sol) polarization free energy of solvation -74.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds