Wall clock time and date at job start Wed Apr 1 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.86942 * 2 1 4 4 C 1.54317 * 110.00938 * 238.90117 * 2 1 3 5 5 H 1.09007 * 110.71797 * 144.34170 * 4 2 1 6 6 N 1.46498 * 110.72405 * 21.24109 * 4 2 1 7 7 C 1.36940 * 120.00188 * 154.99506 * 6 4 2 8 8 H 1.08004 * 119.99776 * 0.02562 * 7 6 4 9 9 C 1.38808 * 120.00263 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99806 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00120 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46829 * 90.00934 * 11 9 7 13 13 H 1.48503 * 109.47464 * 210.00134 * 11 9 7 14 14 H 1.48496 * 109.47457 * 330.00895 * 11 9 7 15 15 C 1.55158 * 102.94266 * 262.70026 * 4 2 1 16 16 C 1.55130 * 101.48564 * 324.33290 * 15 4 2 17 17 N 1.47016 * 109.88239 * 121.01160 * 2 1 3 18 18 C 1.34778 * 125.65442 * 300.60007 * 17 2 1 19 19 O 1.21702 * 119.99455 * 359.97438 * 18 17 2 20 20 C 1.46648 * 120.00461 * 179.97438 * 18 17 2 21 21 C 1.36548 * 125.99061 * 179.97438 * 20 18 17 22 22 C 1.40360 * 106.70846 * 180.19236 * 21 20 18 23 23 C 1.35135 * 107.11904 * 359.63470 * 22 21 20 24 24 C 1.50694 * 125.62112 * 180.15963 * 23 22 21 25 25 N 1.46499 * 109.47438 * 90.26959 * 24 23 22 26 26 C 1.35314 * 125.86249 * 125.00198 * 25 24 23 27 27 C 1.35348 * 106.17190 * 180.02562 * 26 25 24 28 28 N 1.33778 * 106.49791 * 359.97438 * 27 26 25 29 29 N 1.28635 * 108.87938 * 359.74135 * 28 27 26 30 30 O 1.33936 * 108.76005 * 0.36846 * 23 22 21 31 31 H 1.08996 * 109.47126 * 300.43643 * 1 2 3 32 32 H 1.09002 * 109.47224 * 60.44028 * 1 2 3 33 33 H 1.09001 * 109.46634 * 180.43773 * 1 2 3 34 34 H 0.96997 * 119.99718 * 335.00422 * 6 4 2 35 35 H 0.97006 * 120.00168 * 179.97438 * 10 9 7 36 36 H 1.08994 * 111.00356 * 82.57646 * 15 4 2 37 37 H 1.09003 * 111.00101 * 206.38995 * 15 4 2 38 38 H 1.09001 * 110.49936 * 278.45582 * 16 15 4 39 39 H 1.09004 * 110.34216 * 156.05537 * 16 15 4 40 40 H 1.08002 * 126.64113 * 359.92504 * 21 20 18 41 41 H 1.07998 * 126.43957 * 179.77000 * 22 21 20 42 42 H 1.09000 * 109.46928 * 210.27862 * 24 23 22 43 43 H 1.09007 * 109.46505 * 330.27040 * 24 23 22 44 44 H 1.07997 * 126.91349 * 0.02562 * 26 25 24 45 45 H 1.07998 * 126.75402 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 1 2.9684 -0.2808 -1.6162 6 7 1.0354 -0.8012 -2.2893 7 6 1.4052 -0.9367 -3.6009 8 1 2.4507 -1.0054 -3.8629 9 6 0.4362 -0.9867 -4.5936 10 7 -0.8379 -0.9035 -4.2742 11 14 0.9405 -1.1722 -6.3826 12 1 1.0150 -2.6144 -6.7289 13 1 -0.0626 -0.5058 -7.2514 14 1 2.2701 -0.5441 -6.5898 15 6 2.3575 -2.1680 -0.6902 16 6 2.8644 -1.8432 0.7395 17 7 2.0300 -0.7123 1.1849 18 6 1.7730 -0.3827 2.4662 19 8 1.0719 0.5797 2.7180 20 6 2.3379 -1.1837 3.5570 21 6 2.1584 -0.9613 4.8922 22 6 2.8774 -1.9595 5.5679 23 6 3.4505 -2.7426 4.6275 24 6 4.3166 -3.9461 4.8963 25 7 3.4780 -5.1453 4.9674 26 6 3.6372 -6.2688 4.2303 27 6 2.6525 -7.1143 4.6143 28 7 1.9487 -6.4752 5.5556 29 7 2.4669 -5.3133 5.7458 30 8 3.1256 -2.2701 3.4171 31 1 -0.3633 0.5206 0.8860 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3632 -1.0277 0.0079 34 1 0.0965 -0.7397 -2.0540 35 1 -1.5151 -0.9381 -4.9679 36 1 1.4522 -2.7741 -0.6591 37 1 3.1341 -2.6591 -1.2766 38 1 3.9149 -1.5532 0.7153 39 1 2.7219 -2.7015 1.3962 40 1 1.5791 -0.1681 5.3413 41 1 2.9560 -2.0804 6.6382 42 1 5.0431 -4.0580 4.0914 43 1 4.8406 -3.8125 5.8427 44 1 4.3970 -6.4537 3.4855 45 1 2.4711 -8.1094 4.2360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986599379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:31 Heat of formation + Delta-G solvation = 117.498400 kcal Electronic energy + Delta-G solvation = -30025.110363 eV Core-core repulsion = 25855.129831 eV Total energy + Delta-G solvation = -4169.980532 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.63297 -42.99656 -39.95917 -37.62336 -35.62733 -34.32784 -33.40292 -31.92684 -31.37307 -31.01383 -30.76946 -29.13903 -27.39596 -25.29116 -24.08246 -23.23474 -23.00038 -22.44003 -22.12301 -21.25058 -20.19945 -19.02484 -18.28458 -17.83540 -17.39493 -17.06253 -16.56921 -15.93694 -15.60653 -15.45607 -15.10728 -14.65260 -14.61548 -14.27450 -14.03845 -13.77163 -13.59607 -13.37581 -13.33620 -13.01709 -12.74403 -12.44620 -12.19169 -11.99253 -11.87051 -11.60676 -11.29820 -11.26056 -11.01275 -10.87092 -10.64945 -10.53611 -10.37377 -10.32264 -10.12252 -10.00696 -9.72129 -9.70880 -9.07088 -9.00647 -8.53551 -7.09010 -5.86542 -3.17052 0.59449 1.20978 1.68890 2.15874 2.29395 2.34057 2.95697 3.10705 3.37689 3.43051 3.45075 3.85351 3.89596 4.18921 4.38758 4.50079 4.52535 4.58891 4.71521 4.89625 4.94424 5.11535 5.24503 5.27079 5.30033 5.36845 5.45561 5.50431 5.55811 5.61370 5.75376 5.82015 5.94819 5.98641 6.03163 6.11828 6.14995 6.23837 6.43697 6.47113 6.49552 6.64333 6.76438 6.90230 7.50856 7.61040 8.02938 8.17652 8.31438 9.43242 9.97139 10.32221 11.35713 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.002617 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.369874 B =10698.618122 C =12034.028763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.076 0.924 4 C 0.175 3.825 5 H 0.068 0.932 6 N -0.715 5.715 7 C -0.247 4.247 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.154 4.154 16 C 0.097 3.903 17 N -0.596 5.596 18 C 0.608 3.392 19 O -0.518 6.518 20 C -0.037 4.037 21 C -0.133 4.133 22 C -0.161 4.161 23 C -0.040 4.040 24 C 0.203 3.797 25 N -0.297 5.297 26 C -0.045 4.045 27 C -0.050 4.050 28 N -0.269 5.269 29 N -0.076 5.076 30 O -0.151 6.151 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.391 0.609 35 H 0.257 0.743 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.194 0.806 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.609 -7.629 19.797 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.094 0.906 4 C 0.063 3.937 5 H 0.086 0.914 6 N -0.358 5.358 7 C -0.378 4.378 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.195 4.195 16 C -0.026 4.026 17 N -0.328 5.328 18 C 0.395 3.605 19 O -0.396 6.396 20 C -0.090 4.090 21 C -0.153 4.153 22 C -0.181 4.181 23 C -0.093 4.093 24 C 0.083 3.917 25 N -0.092 5.092 26 C -0.195 4.195 27 C -0.207 4.207 28 N -0.135 5.135 29 N -0.056 5.056 30 O -0.046 6.046 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.229 0.771 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.211 0.789 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 13.492 -6.569 20.570 25.462 hybrid contribution 0.703 -0.647 -1.695 1.946 sum 14.194 -7.217 18.875 24.695 Atomic orbital electron populations 1.22022 0.94204 1.02584 1.03005 1.22004 0.95702 0.95934 0.83995 0.90558 1.21175 0.93372 0.91935 0.87243 0.91427 1.42648 1.04490 1.86956 1.01725 1.19237 0.92582 1.43004 0.83016 0.91013 1.24767 0.95224 1.02433 0.98154 1.69658 0.98970 1.56677 1.32402 0.86169 0.77358 0.77622 0.84863 1.21653 1.21711 1.20690 1.23622 1.01757 1.01463 0.92660 1.22551 0.94275 0.88404 0.97329 1.48517 1.48962 1.30688 1.04681 1.16186 0.80740 0.83406 0.80135 1.90883 1.38476 1.27598 1.82671 1.22361 0.99810 0.90687 0.96166 1.21981 1.01200 1.00868 0.91272 1.21653 0.99755 0.95904 1.00801 1.22118 1.04857 0.99016 0.83290 1.20289 0.88791 0.76131 1.06489 1.47557 1.22210 1.13041 1.26343 1.23778 1.05307 0.87758 1.02667 1.23688 0.95180 1.02542 0.99282 1.75165 1.22798 0.99701 1.15848 1.78364 0.98834 1.13976 1.14384 1.84150 1.53071 1.36760 1.30653 0.92029 0.89803 0.92492 0.77087 0.93294 0.90637 0.90385 0.91376 0.90857 0.81742 0.82147 0.85484 0.84878 0.78938 0.79168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 7.93 37.16 0.29 -2.71 16 2 C 0.13 2.22 3.47 -66.96 -0.23 1.99 16 3 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 4 C 0.18 3.28 3.48 -66.10 -0.23 3.05 16 5 H 0.07 1.24 8.09 -51.93 -0.42 0.82 16 6 N -0.72 -16.96 4.95 -51.65 -0.26 -17.21 16 7 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 11 Si 0.91 21.62 29.55 -169.99 -5.02 16.59 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 15 C -0.15 -2.47 6.79 -24.46 -0.17 -2.63 16 16 C 0.10 1.31 6.19 -2.41 -0.01 1.30 16 17 N -0.60 -9.40 3.08 -164.41 -0.51 -9.91 16 18 C 0.61 9.84 7.60 -12.87 -0.10 9.74 16 19 O -0.52 -9.68 15.75 5.19 0.08 -9.60 16 20 C -0.04 -0.50 6.93 -36.80 -0.26 -0.75 16 21 C -0.13 -1.53 10.62 -39.39 -0.42 -1.95 16 22 C -0.16 -1.47 10.77 -39.89 -0.43 -1.90 16 23 C -0.04 -0.35 6.69 -35.42 -0.24 -0.59 16 24 C 0.20 1.00 6.98 -5.20 -0.04 0.97 16 25 N -0.30 -2.43 3.43 -62.44 -0.21 -2.64 16 26 C -0.05 -0.30 11.57 -17.05 -0.20 -0.50 16 27 C -0.05 -0.44 12.05 -17.73 -0.21 -0.65 16 28 N -0.27 -3.34 12.41 30.24 0.38 -2.97 16 29 N -0.08 -0.89 12.93 60.35 0.78 -0.11 16 30 O -0.15 -1.72 7.85 4.99 0.04 -1.68 16 31 H 0.06 1.15 6.73 -51.93 -0.35 0.80 16 32 H 0.08 1.70 6.82 -51.93 -0.35 1.34 16 33 H 0.06 1.10 8.02 -51.93 -0.42 0.68 16 34 H 0.39 9.87 5.08 -40.82 -0.21 9.66 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.94 6.20 -51.93 -0.32 0.61 16 40 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.13 0.24 8.07 -51.93 -0.42 -0.18 16 43 H 0.13 0.29 8.14 -51.92 -0.42 -0.14 16 44 H 0.19 0.48 8.06 -52.49 -0.42 0.05 16 45 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 378.94 15.07 5.71 5.71 Total: -1.00 -34.94 378.94 -6.61 -41.54 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.84 Total: 8.42 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.48 Total: -1.65 kcal Atomic # 7 Polarization: -60.25 SS G_CDS: 0.90 Total: -59.34 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.12 Total: -11.27 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.94 -6.61 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986599379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.041 kcal (2) G-P(sol) polarization free energy of solvation -34.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds