Wall clock time and date at job start Wed Apr 1 2020 05:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.86942 * 2 1 4 4 C 1.54317 * 110.00938 * 238.90117 * 2 1 3 5 5 H 1.09007 * 110.71797 * 144.34170 * 4 2 1 6 6 N 1.46498 * 110.72405 * 21.24109 * 4 2 1 7 7 C 1.36940 * 120.00188 * 154.99506 * 6 4 2 8 8 H 1.08004 * 119.99776 * 0.02562 * 7 6 4 9 9 C 1.38808 * 120.00263 * 179.97438 * 7 6 4 10 10 N 1.31617 * 119.99806 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00120 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.46829 * 90.00934 * 11 9 7 13 13 H 1.48503 * 109.47464 * 210.00134 * 11 9 7 14 14 H 1.48496 * 109.47457 * 330.00895 * 11 9 7 15 15 C 1.55158 * 102.94266 * 262.70026 * 4 2 1 16 16 C 1.55130 * 101.48564 * 324.33290 * 15 4 2 17 17 N 1.47016 * 109.88239 * 121.01160 * 2 1 3 18 18 C 1.34778 * 125.65442 * 300.60007 * 17 2 1 19 19 O 1.21702 * 119.99455 * 359.97438 * 18 17 2 20 20 C 1.46648 * 120.00461 * 179.97438 * 18 17 2 21 21 C 1.36548 * 125.99061 * 179.97438 * 20 18 17 22 22 C 1.40360 * 106.70846 * 180.19236 * 21 20 18 23 23 C 1.35135 * 107.11904 * 359.63470 * 22 21 20 24 24 C 1.50694 * 125.62112 * 180.15963 * 23 22 21 25 25 N 1.46499 * 109.47438 * 90.26959 * 24 23 22 26 26 C 1.35314 * 125.86249 * 125.00198 * 25 24 23 27 27 C 1.35348 * 106.17190 * 180.02562 * 26 25 24 28 28 N 1.33778 * 106.49791 * 359.97438 * 27 26 25 29 29 N 1.28635 * 108.87938 * 359.74135 * 28 27 26 30 30 O 1.33936 * 108.76005 * 0.36846 * 23 22 21 31 31 H 1.08996 * 109.47126 * 300.43643 * 1 2 3 32 32 H 1.09002 * 109.47224 * 60.44028 * 1 2 3 33 33 H 1.09001 * 109.46634 * 180.43773 * 1 2 3 34 34 H 0.96997 * 119.99718 * 335.00422 * 6 4 2 35 35 H 0.97006 * 120.00168 * 179.97438 * 10 9 7 36 36 H 1.08994 * 111.00356 * 82.57646 * 15 4 2 37 37 H 1.09003 * 111.00101 * 206.38995 * 15 4 2 38 38 H 1.09001 * 110.49936 * 278.45582 * 16 15 4 39 39 H 1.09004 * 110.34216 * 156.05537 * 16 15 4 40 40 H 1.08002 * 126.64113 * 359.92504 * 21 20 18 41 41 H 1.07998 * 126.43957 * 179.77000 * 22 21 20 42 42 H 1.09000 * 109.46928 * 210.27862 * 24 23 22 43 43 H 1.09007 * 109.46505 * 330.27040 * 24 23 22 44 44 H 1.07997 * 126.91349 * 0.02562 * 26 25 24 45 45 H 1.07998 * 126.75402 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2416 5 1 2.9684 -0.2808 -1.6162 6 7 1.0354 -0.8012 -2.2893 7 6 1.4052 -0.9367 -3.6009 8 1 2.4507 -1.0054 -3.8629 9 6 0.4362 -0.9867 -4.5936 10 7 -0.8379 -0.9035 -4.2742 11 14 0.9405 -1.1722 -6.3826 12 1 1.0150 -2.6144 -6.7289 13 1 -0.0626 -0.5058 -7.2514 14 1 2.2701 -0.5441 -6.5898 15 6 2.3575 -2.1680 -0.6902 16 6 2.8644 -1.8432 0.7395 17 7 2.0300 -0.7123 1.1849 18 6 1.7730 -0.3827 2.4662 19 8 1.0719 0.5797 2.7180 20 6 2.3379 -1.1837 3.5570 21 6 2.1584 -0.9613 4.8922 22 6 2.8774 -1.9595 5.5679 23 6 3.4505 -2.7426 4.6275 24 6 4.3166 -3.9461 4.8963 25 7 3.4780 -5.1453 4.9674 26 6 3.6372 -6.2688 4.2303 27 6 2.6525 -7.1143 4.6143 28 7 1.9487 -6.4752 5.5556 29 7 2.4669 -5.3133 5.7458 30 8 3.1256 -2.2701 3.4171 31 1 -0.3633 0.5206 0.8860 32 1 -0.3634 0.5070 -0.8939 33 1 -0.3632 -1.0277 0.0079 34 1 0.0965 -0.7397 -2.0540 35 1 -1.5151 -0.9381 -4.9679 36 1 1.4522 -2.7741 -0.6591 37 1 3.1341 -2.6591 -1.2766 38 1 3.9149 -1.5532 0.7153 39 1 2.7219 -2.7015 1.3962 40 1 1.5791 -0.1681 5.3413 41 1 2.9560 -2.0804 6.6382 42 1 5.0431 -4.0580 4.0914 43 1 4.8406 -3.8125 5.8427 44 1 4.3970 -6.4537 3.4855 45 1 2.4711 -8.1094 4.2360 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986599379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:30 Heat of formation + Delta-G solvation = 93.444613 kcal Electronic energy + Delta-G solvation = -30026.153414 eV Core-core repulsion = 25855.129831 eV Total energy + Delta-G solvation = -4171.023582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.26693 -43.78652 -41.25927 -39.00125 -36.23390 -35.98799 -34.25514 -33.56743 -32.27201 -31.98904 -31.82106 -30.66799 -28.21672 -26.85442 -25.58982 -24.60923 -23.65325 -23.26014 -23.01125 -22.05177 -21.29920 -20.40063 -19.49539 -18.95780 -18.63615 -17.86845 -17.46023 -17.05776 -16.85989 -16.46657 -16.18701 -15.89414 -15.64613 -15.37658 -15.08370 -14.92457 -14.66202 -14.46575 -14.39134 -14.15893 -13.91618 -13.69909 -13.34111 -13.26173 -13.08364 -12.94730 -12.85582 -12.61588 -12.57243 -12.12431 -12.07052 -11.88916 -11.68077 -11.62158 -11.38734 -11.22261 -11.16306 -10.93034 -10.30734 -10.04190 -9.68866 -9.03707 -7.93981 -5.23747 -0.27213 0.61394 0.97915 1.31433 1.50181 1.51334 1.59705 1.65806 1.75752 1.85678 1.98036 2.57550 3.09617 3.37048 3.51329 3.56100 3.65264 3.77779 3.79297 3.87844 3.89149 4.11244 4.19749 4.28231 4.31917 4.33039 4.37075 4.43908 4.48210 4.54771 4.60053 4.70971 4.74011 4.77606 4.85954 4.97672 5.13887 5.17460 5.19338 5.24338 5.28514 5.41772 5.54343 5.63534 5.69756 6.26729 6.29444 6.79935 7.34475 7.53504 8.06651 8.30464 9.29607 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013321 B = 0.002617 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.369874 B =10698.618122 C =12034.028763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.075 0.925 4 C 0.169 3.831 5 H 0.077 0.923 6 N -0.731 5.731 7 C -0.239 4.239 8 H 0.084 0.916 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.974 3.026 12 H -0.288 1.288 13 H -0.301 1.301 14 H -0.266 1.266 15 C -0.143 4.143 16 C 0.108 3.892 17 N -0.599 5.599 18 C 0.606 3.394 19 O -0.556 6.556 20 C -0.072 4.072 21 C -0.128 4.128 22 C -0.170 4.170 23 C -0.022 4.022 24 C 0.197 3.803 25 N -0.295 5.295 26 C -0.025 4.025 27 C -0.072 4.072 28 N -0.316 5.316 29 N -0.117 5.117 30 O -0.154 6.154 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.044 0.956 34 H 0.380 0.620 35 H 0.250 0.750 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.240 0.760 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.517 -9.247 20.457 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.029 3.971 3 H 0.093 0.907 4 C 0.058 3.942 5 H 0.095 0.905 6 N -0.373 5.373 7 C -0.371 4.371 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.622 5.622 11 Si 0.803 3.197 12 H -0.215 1.215 13 H -0.228 1.228 14 H -0.191 1.191 15 C -0.184 4.184 16 C -0.013 4.013 17 N -0.331 5.331 18 C 0.395 3.605 19 O -0.437 6.437 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.190 4.190 23 C -0.074 4.074 24 C 0.078 3.922 25 N -0.090 5.090 26 C -0.176 4.176 27 C -0.229 4.229 28 N -0.182 5.182 29 N -0.097 5.097 30 O -0.050 6.050 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.216 0.784 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.182 0.818 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.257 0.743 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 17.464 -8.190 21.276 28.718 hybrid contribution -0.405 -0.204 -1.765 1.822 sum 17.059 -8.395 19.511 27.243 Atomic orbital electron populations 1.21842 0.95583 1.01330 1.01702 1.21758 0.94479 0.96144 0.84728 0.90662 1.21380 0.92376 0.93903 0.86497 0.90470 1.42826 1.05016 1.87246 1.02196 1.19674 0.92988 1.40332 0.84087 0.89774 1.25571 0.95298 1.03725 1.02168 1.69828 1.00006 1.59244 1.33093 0.85135 0.77195 0.77350 0.80018 1.21465 1.22848 1.19069 1.23424 1.01459 0.98993 0.94537 1.22614 0.95149 0.88111 0.95450 1.48511 1.49284 1.31096 1.04171 1.16515 0.80147 0.83237 0.80559 1.90848 1.40194 1.29371 1.83332 1.21764 1.02729 0.92523 0.95481 1.22230 1.00492 1.01066 0.91061 1.21958 0.99513 0.95310 1.02174 1.22915 1.03238 0.99152 0.82136 1.20929 0.87911 0.73384 1.09962 1.47785 1.21544 1.14074 1.25578 1.24497 1.04903 0.86337 1.01834 1.24259 0.95645 1.03931 0.99035 1.75094 1.24594 1.00683 1.17829 1.78288 1.00748 1.14264 1.16358 1.84098 1.52822 1.36107 1.31950 0.92376 0.91838 0.93682 0.78447 0.94114 0.92903 0.88586 0.88402 0.89527 0.81776 0.79772 0.81329 0.81594 0.74349 0.77110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.76 7.93 71.98 0.57 -5.19 16 2 C 0.13 4.69 3.47 45.34 0.16 4.85 16 3 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.17 6.19 3.48 46.18 0.16 6.35 16 5 H 0.08 2.70 8.09 -2.38 -0.02 2.68 16 6 N -0.73 -35.04 4.95 -317.33 -1.57 -36.61 16 7 C -0.24 -12.53 9.96 84.03 0.84 -11.69 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 C -0.08 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 11 Si 0.97 44.65 29.55 68.60 2.03 46.68 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 14 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 15 C -0.14 -4.35 6.79 32.06 0.22 -4.13 16 16 C 0.11 2.64 6.19 86.93 0.54 3.18 16 17 N -0.60 -18.44 3.08 -792.29 -2.44 -20.88 16 18 C 0.61 19.56 7.60 86.44 0.66 20.22 16 19 O -0.56 -21.40 15.75 -4.35 -0.07 -21.47 16 20 C -0.07 -1.86 6.93 24.07 0.17 -1.69 16 21 C -0.13 -2.82 10.62 22.39 0.24 -2.58 16 22 C -0.17 -2.67 10.77 22.07 0.24 -2.43 16 23 C -0.02 -0.31 6.69 24.97 0.17 -0.14 16 24 C 0.20 0.95 6.98 85.63 0.60 1.55 16 25 N -0.29 -3.74 3.43 -351.47 -1.20 -4.94 16 26 C -0.03 -0.23 11.57 83.49 0.97 0.74 16 27 C -0.07 -1.08 12.05 83.73 1.01 -0.07 16 28 N -0.32 -7.62 12.41 -58.25 -0.72 -8.34 16 29 N -0.12 -2.57 12.93 37.02 0.48 -2.09 16 30 O -0.15 -3.05 7.85 -5.08 -0.04 -3.09 16 31 H 0.06 2.29 6.73 -2.39 -0.02 2.27 16 32 H 0.06 2.73 6.82 -2.39 -0.02 2.72 16 33 H 0.04 1.83 8.02 -2.39 -0.02 1.81 16 34 H 0.38 19.87 5.08 -92.71 -0.47 19.40 16 35 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.09 1.94 6.20 -2.38 -0.01 1.92 16 40 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 41 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 42 H 0.17 -0.53 8.07 -2.39 -0.02 -0.55 16 43 H 0.17 -0.21 8.14 -2.38 -0.02 -0.23 16 44 H 0.24 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -80.66 378.94 4.29 -76.37 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.56 Total: 27.39 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 6.99 Total: 5.24 kcal Atomic # 7 Polarization: -125.94 SS G_CDS: -5.18 Total: -131.12 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.11 Total: -24.56 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -80.66 4.29 -76.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986599379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.817 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds