Wall clock time and date at job start Wed Apr 1 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99944 * 2 1 4 4 C 1.54324 * 109.88047 * 121.09725 * 2 1 3 5 5 H 1.08995 * 110.87796 * 23.16981 * 4 2 1 6 6 N 1.46506 * 110.71755 * 259.97088 * 4 2 1 7 7 C 1.36936 * 119.99985 * 160.02358 * 6 4 2 8 8 H 1.08003 * 119.99726 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00067 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47150 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47017 * 119.99979 * 11 9 7 14 14 H 1.48504 * 109.46764 * 240.00235 * 11 9 7 15 15 C 1.55156 * 102.94374 * 141.61062 * 4 2 1 16 16 C 1.54906 * 101.61451 * 324.47489 * 15 4 2 17 17 N 1.47019 * 109.88235 * 238.90431 * 2 1 3 18 18 C 1.34776 * 125.65091 * 61.67376 * 17 2 1 19 19 O 1.21697 * 119.99627 * 0.02562 * 18 17 2 20 20 C 1.46657 * 119.99950 * 180.02562 * 18 17 2 21 21 C 1.36550 * 125.98549 * 179.71516 * 20 18 17 22 22 C 1.40358 * 106.70804 * 179.90910 * 21 20 18 23 23 C 1.35136 * 107.11690 * 0.35561 * 22 21 20 24 24 C 1.50702 * 125.61947 * 179.77688 * 23 22 21 25 25 N 1.46496 * 109.46748 * 90.02574 * 24 23 22 26 26 C 1.35315 * 125.86630 * 125.00257 * 25 24 23 27 27 C 1.35351 * 106.17674 * 179.97438 * 26 25 24 28 28 N 1.33776 * 106.49287 * 0.02562 * 27 26 25 29 29 N 1.28630 * 108.88653 * 359.72912 * 28 27 26 30 30 O 1.33930 * 108.76493 * 359.78138 * 23 22 21 31 31 H 1.09007 * 109.46666 * 298.90798 * 1 2 3 32 32 H 1.09002 * 109.46808 * 58.89913 * 1 2 3 33 33 H 1.08994 * 109.47264 * 178.90820 * 1 2 3 34 34 H 0.96998 * 119.99751 * 340.02403 * 6 4 2 35 35 H 0.96999 * 120.00334 * 179.97438 * 10 9 7 36 36 H 1.09002 * 111.00677 * 82.57073 * 15 4 2 37 37 H 1.09002 * 111.00564 * 206.38331 * 15 4 2 38 38 H 1.09008 * 110.36767 * 155.86672 * 16 15 4 39 39 H 1.08997 * 110.36995 * 278.19392 * 16 15 4 40 40 H 1.08002 * 126.64219 * 0.04410 * 21 20 18 41 41 H 1.07999 * 126.44334 * 180.10876 * 22 21 20 42 42 H 1.08996 * 109.46654 * 210.02696 * 24 23 22 43 43 H 1.09004 * 109.46670 * 330.02466 * 24 23 22 44 44 H 1.07998 * 126.91135 * 0.02562 * 26 25 24 45 45 H 1.08000 * 126.75073 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 1.3064 -1.4458 1.6212 6 7 2.4555 0.1961 2.2875 7 6 2.5575 -0.2225 3.5873 8 1 2.3429 -1.2499 3.8422 9 6 2.9376 0.6733 4.5772 10 7 3.2005 1.9249 4.2664 11 14 3.0774 0.1021 6.3503 12 1 2.7317 -1.3396 6.4346 13 1 4.4684 0.3068 6.8280 14 1 2.1426 0.8852 7.1977 15 6 3.2876 -1.5143 0.6924 16 6 2.8151 -1.8804 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8085 -0.3613 -2.4657 19 8 1.1435 0.6260 -2.7188 20 6 2.3688 -1.1673 -3.5553 21 6 2.2174 -0.9269 -4.8909 22 6 2.9174 -1.9395 -5.5651 23 6 3.4520 -2.7481 -4.6236 24 6 4.2853 -3.9751 -4.8907 25 7 5.6993 -3.5989 -4.9617 26 6 6.6998 -4.1330 -4.2237 27 6 7.8322 -3.4994 -4.6088 28 7 7.4736 -2.6198 -5.5507 29 7 6.2044 -2.7073 -5.7406 30 8 3.1192 -2.2796 -3.4139 31 1 -0.3633 0.4968 0.8997 32 1 -0.3633 0.5309 -0.8800 33 1 -0.3633 -1.0274 -0.0196 34 1 2.6485 1.1187 2.0585 35 1 3.4658 2.5510 4.9581 36 1 4.1654 -0.8689 0.6604 37 1 3.4856 -2.4107 1.2801 38 1 3.6725 -2.0352 -1.3917 39 1 2.1892 -2.7724 -0.7125 40 1 1.6675 -0.1136 -5.3412 41 1 3.0081 -2.0536 -6.6353 42 1 4.1407 -4.6948 -4.0851 43 1 3.9803 -4.4224 -5.8368 44 1 6.6125 -4.9094 -3.4780 45 1 8.8289 -3.6698 -4.2295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986599383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:35 Heat of formation + Delta-G solvation = 110.969317 kcal Electronic energy + Delta-G solvation = -29910.469567 eV Core-core repulsion = 25740.205913 eV Total energy + Delta-G solvation = -4170.263654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.63249 -42.99943 -39.93138 -37.57496 -35.62755 -34.26573 -33.40878 -31.94043 -31.37182 -31.11457 -30.84868 -29.29583 -27.43779 -25.29858 -23.89830 -23.12576 -23.00629 -22.43206 -22.02629 -21.19072 -20.32351 -19.60210 -18.28626 -17.54988 -17.32838 -17.08169 -16.59014 -16.05787 -15.76375 -15.26664 -15.04376 -14.69166 -14.61507 -14.11315 -14.00587 -13.79914 -13.54843 -13.43603 -13.26410 -12.99949 -12.87185 -12.68548 -12.26284 -11.99284 -11.96261 -11.65613 -11.27157 -11.24696 -11.10579 -10.89755 -10.67105 -10.64605 -10.36642 -10.31861 -10.21010 -10.00165 -9.78466 -9.71957 -9.07961 -9.00644 -8.54878 -7.09386 -5.86507 -3.17617 0.59037 1.20955 1.68639 2.15523 2.29461 2.33878 2.93973 3.09604 3.37373 3.42779 3.45477 3.84915 3.89491 4.18877 4.38444 4.49323 4.51956 4.58698 4.71537 4.89686 4.93163 5.09857 5.23954 5.26955 5.29303 5.34403 5.39988 5.49178 5.56070 5.61317 5.70984 5.82022 5.85789 5.97950 5.98387 6.05840 6.11839 6.21809 6.35102 6.42412 6.48679 6.53915 6.64369 6.83727 7.48957 7.61051 8.01504 8.17697 8.30304 9.42079 9.95497 10.30303 11.35593 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.002653 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.196489 B =10550.593009 C =12123.818668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.127 3.873 3 H 0.082 0.918 4 C 0.178 3.822 5 H 0.067 0.933 6 N -0.715 5.715 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.009 4.009 10 N -0.928 5.928 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C -0.155 4.155 16 C 0.098 3.902 17 N -0.596 5.596 18 C 0.608 3.392 19 O -0.518 6.518 20 C -0.037 4.037 21 C -0.132 4.132 22 C -0.161 4.161 23 C -0.040 4.040 24 C 0.204 3.796 25 N -0.297 5.297 26 C -0.045 4.045 27 C -0.050 4.050 28 N -0.269 5.269 29 N -0.076 5.076 30 O -0.151 6.151 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.127 0.873 43 H 0.133 0.867 44 H 0.194 0.806 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.439 -16.840 -19.794 26.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.024 3.976 3 H 0.100 0.900 4 C 0.066 3.934 5 H 0.085 0.915 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.091 0.909 9 C -0.206 4.206 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 C -0.197 4.197 16 C -0.024 4.024 17 N -0.328 5.328 18 C 0.395 3.605 19 O -0.397 6.397 20 C -0.090 4.090 21 C -0.153 4.153 22 C -0.181 4.181 23 C -0.093 4.093 24 C 0.083 3.917 25 N -0.092 5.092 26 C -0.195 4.195 27 C -0.207 4.207 28 N -0.135 5.135 29 N -0.056 5.056 30 O -0.046 6.046 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.183 0.817 41 H 0.179 0.821 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.211 0.789 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 0.843 -15.455 -20.577 25.748 hybrid contribution 0.427 -0.831 1.689 1.930 sum 1.270 -16.286 -18.888 24.972 Atomic orbital electron populations 1.22060 0.94452 1.01797 1.03005 1.22014 0.94708 0.97027 0.83877 0.89964 1.21239 0.93517 0.91620 0.87033 0.91527 1.42358 1.80915 1.09103 1.03129 1.19227 1.39439 0.95192 0.83735 0.90912 1.24777 1.01953 0.95631 0.98217 1.69671 1.52333 1.03039 1.32535 0.86110 0.77321 0.77701 0.84954 1.20481 1.21789 1.21771 1.23598 1.01526 1.01886 0.92665 1.22533 0.94778 0.87851 0.97288 1.48505 1.51094 1.28595 1.04646 1.16185 0.80643 0.83492 0.80142 1.90884 1.40249 1.25894 1.82625 1.22345 1.00967 0.89576 0.96137 1.21983 1.01309 1.00741 0.91271 1.21654 1.00422 0.95214 1.00811 1.22123 1.04074 0.99777 0.83292 1.20292 0.73111 0.91796 1.06499 1.47560 1.08969 1.26328 1.26310 1.23780 0.87898 1.05195 1.02630 1.23689 1.00418 0.97333 0.99248 1.75160 1.03169 1.19318 1.15857 1.78366 1.04365 1.08437 1.14391 1.84148 1.54294 1.35501 1.30685 0.90753 0.91877 0.92938 0.77934 0.93348 0.90557 0.90353 0.90823 0.91436 0.81735 0.82137 0.85483 0.84876 0.78937 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.10 37.16 0.34 -2.17 16 2 C 0.13 2.21 3.21 -66.95 -0.21 2.00 16 3 H 0.08 1.61 7.69 -51.93 -0.40 1.21 16 4 C 0.18 3.32 3.11 -66.09 -0.21 3.11 16 5 H 0.07 1.23 7.84 -51.93 -0.41 0.82 16 6 N -0.71 -17.01 5.25 -51.65 -0.27 -17.29 16 7 C -0.25 -6.44 9.98 -15.06 -0.15 -6.60 16 8 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.32 13.06 55.49 0.72 -26.59 16 11 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 C -0.16 -2.51 6.76 -24.58 -0.17 -2.68 16 16 C 0.10 1.33 6.17 -2.47 -0.02 1.32 16 17 N -0.60 -9.40 3.07 -164.46 -0.50 -9.91 16 18 C 0.61 9.84 7.61 -12.86 -0.10 9.74 16 19 O -0.52 -9.68 15.92 5.19 0.08 -9.60 16 20 C -0.04 -0.50 6.93 -36.79 -0.25 -0.75 16 21 C -0.13 -1.53 10.62 -39.39 -0.42 -1.94 16 22 C -0.16 -1.46 10.77 -39.89 -0.43 -1.89 16 23 C -0.04 -0.35 6.69 -35.41 -0.24 -0.59 16 24 C 0.20 1.00 6.98 -5.19 -0.04 0.97 16 25 N -0.30 -2.43 3.43 -62.44 -0.21 -2.64 16 26 C -0.05 -0.30 11.57 -17.05 -0.20 -0.50 16 27 C -0.05 -0.44 12.05 -17.73 -0.21 -0.65 16 28 N -0.27 -3.34 12.41 30.24 0.38 -2.97 16 29 N -0.08 -0.89 12.93 60.35 0.78 -0.11 16 30 O -0.15 -1.71 7.86 5.00 0.04 -1.67 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.05 6.90 -51.93 -0.36 0.69 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.39 9.98 7.51 -40.82 -0.31 9.67 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.07 0.94 6.23 -51.92 -0.32 0.62 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.13 0.24 8.07 -51.93 -0.42 -0.18 16 43 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.19 0.48 8.06 -52.49 -0.42 0.05 16 45 H 0.19 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 383.29 15.07 5.78 5.78 Total: -1.00 -34.98 383.29 -6.62 -41.59 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.99 Total: 7.81 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.40 Total: -0.98 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: 0.89 Total: -59.51 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.12 Total: -11.27 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.98 -6.62 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986599383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.562 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds