Wall clock time and date at job start Wed Apr 1 2020 05:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.99944 * 2 1 4 4 C 1.54324 * 109.88047 * 121.09725 * 2 1 3 5 5 H 1.08995 * 110.87796 * 23.16981 * 4 2 1 6 6 N 1.46506 * 110.71755 * 259.97088 * 4 2 1 7 7 C 1.36936 * 119.99985 * 160.02358 * 6 4 2 8 8 H 1.08003 * 119.99726 * 0.02562 * 7 6 4 9 9 C 1.38807 * 120.00067 * 179.97438 * 7 6 4 10 10 N 1.31615 * 120.00241 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 120.00027 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47150 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47017 * 119.99979 * 11 9 7 14 14 H 1.48504 * 109.46764 * 240.00235 * 11 9 7 15 15 C 1.55156 * 102.94374 * 141.61062 * 4 2 1 16 16 C 1.54906 * 101.61451 * 324.47489 * 15 4 2 17 17 N 1.47019 * 109.88235 * 238.90431 * 2 1 3 18 18 C 1.34776 * 125.65091 * 61.67376 * 17 2 1 19 19 O 1.21697 * 119.99627 * 0.02562 * 18 17 2 20 20 C 1.46657 * 119.99950 * 180.02562 * 18 17 2 21 21 C 1.36550 * 125.98549 * 179.71516 * 20 18 17 22 22 C 1.40358 * 106.70804 * 179.90910 * 21 20 18 23 23 C 1.35136 * 107.11690 * 0.35561 * 22 21 20 24 24 C 1.50702 * 125.61947 * 179.77688 * 23 22 21 25 25 N 1.46496 * 109.46748 * 90.02574 * 24 23 22 26 26 C 1.35315 * 125.86630 * 125.00257 * 25 24 23 27 27 C 1.35351 * 106.17674 * 179.97438 * 26 25 24 28 28 N 1.33776 * 106.49287 * 0.02562 * 27 26 25 29 29 N 1.28630 * 108.88653 * 359.72912 * 28 27 26 30 30 O 1.33930 * 108.76493 * 359.78138 * 23 22 21 31 31 H 1.09007 * 109.46666 * 298.90798 * 1 2 3 32 32 H 1.09002 * 109.46808 * 58.89913 * 1 2 3 33 33 H 1.08994 * 109.47264 * 178.90820 * 1 2 3 34 34 H 0.96998 * 119.99751 * 340.02403 * 6 4 2 35 35 H 0.96999 * 120.00334 * 179.97438 * 10 9 7 36 36 H 1.09002 * 111.00677 * 82.57073 * 15 4 2 37 37 H 1.09002 * 111.00564 * 206.38331 * 15 4 2 38 38 H 1.09008 * 110.36767 * 155.86672 * 16 15 4 39 39 H 1.08997 * 110.36995 * 278.19392 * 16 15 4 40 40 H 1.08002 * 126.64219 * 0.04410 * 21 20 18 41 41 H 1.07999 * 126.44334 * 180.10876 * 22 21 20 42 42 H 1.08996 * 109.46654 * 210.02696 * 24 23 22 43 43 H 1.09004 * 109.46670 * 330.02466 * 24 23 22 44 44 H 1.07998 * 126.91135 * 0.02562 * 26 25 24 45 45 H 1.08000 * 126.75073 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7496 1.2427 5 1 1.3064 -1.4458 1.6212 6 7 2.4555 0.1961 2.2875 7 6 2.5575 -0.2225 3.5873 8 1 2.3429 -1.2499 3.8422 9 6 2.9376 0.6733 4.5772 10 7 3.2005 1.9249 4.2664 11 14 3.0774 0.1021 6.3503 12 1 2.7317 -1.3396 6.4346 13 1 4.4684 0.3068 6.8280 14 1 2.1426 0.8852 7.1977 15 6 3.2876 -1.5143 0.6924 16 6 2.8151 -1.8804 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8085 -0.3613 -2.4657 19 8 1.1435 0.6260 -2.7188 20 6 2.3688 -1.1673 -3.5553 21 6 2.2174 -0.9269 -4.8909 22 6 2.9174 -1.9395 -5.5651 23 6 3.4520 -2.7481 -4.6236 24 6 4.2853 -3.9751 -4.8907 25 7 5.6993 -3.5989 -4.9617 26 6 6.6998 -4.1330 -4.2237 27 6 7.8322 -3.4994 -4.6088 28 7 7.4736 -2.6198 -5.5507 29 7 6.2044 -2.7073 -5.7406 30 8 3.1192 -2.2796 -3.4139 31 1 -0.3633 0.4968 0.8997 32 1 -0.3633 0.5309 -0.8800 33 1 -0.3633 -1.0274 -0.0196 34 1 2.6485 1.1187 2.0585 35 1 3.4658 2.5510 4.9581 36 1 4.1654 -0.8689 0.6604 37 1 3.4856 -2.4107 1.2801 38 1 3.6725 -2.0352 -1.3917 39 1 2.1892 -2.7724 -0.7125 40 1 1.6675 -0.1136 -5.3412 41 1 3.0081 -2.0536 -6.6353 42 1 4.1407 -4.6948 -4.0851 43 1 3.9803 -4.4224 -5.8368 44 1 6.6125 -4.9094 -3.4780 45 1 8.8289 -3.6698 -4.2295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986599383.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:34 Heat of formation + Delta-G solvation = 86.539834 kcal Electronic energy + Delta-G solvation = -29911.528909 eV Core-core repulsion = 25740.205913 eV Total energy + Delta-G solvation = -4171.322996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.26844 -43.79005 -41.21614 -38.94574 -36.22695 -35.97690 -34.26122 -33.51471 -32.47217 -31.97975 -31.79175 -30.80132 -28.22189 -26.91185 -25.11720 -24.65892 -23.63370 -23.21983 -22.95056 -22.04736 -21.60677 -20.79951 -19.24103 -18.90191 -18.52074 -18.00176 -17.50909 -17.22585 -16.67152 -16.52672 -16.09177 -15.68733 -15.56153 -15.43836 -15.08491 -14.90686 -14.66666 -14.52729 -14.37162 -14.17442 -14.11167 -13.71483 -13.35688 -13.28976 -13.12430 -12.94288 -12.69731 -12.61594 -12.57501 -12.19895 -12.07280 -11.88965 -11.74931 -11.65562 -11.43113 -11.23292 -11.17033 -10.94127 -10.30832 -10.05099 -9.69316 -9.05400 -7.94637 -5.25363 -0.27820 0.61211 0.97575 1.30638 1.49893 1.50415 1.60338 1.65720 1.75618 1.84328 1.97079 2.56830 3.08924 3.37105 3.49748 3.55685 3.64301 3.74493 3.77857 3.85983 3.94265 4.12012 4.19576 4.25930 4.31860 4.33708 4.36986 4.42891 4.45823 4.53877 4.60696 4.69571 4.72508 4.82234 4.87058 4.98033 5.14892 5.16229 5.20176 5.24148 5.28395 5.38376 5.54183 5.63440 5.69284 6.24634 6.28532 6.78799 7.31756 7.53389 8.02368 8.26496 9.29086 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.002653 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.196489 B =10550.593009 C =12123.818668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 H 0.049 0.951 4 C 0.174 3.826 5 H 0.077 0.923 6 N -0.730 5.730 7 C -0.235 4.235 8 H 0.086 0.914 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.259 1.259 13 H -0.297 1.297 14 H -0.298 1.298 15 C -0.146 4.146 16 C 0.110 3.890 17 N -0.599 5.599 18 C 0.605 3.395 19 O -0.557 6.557 20 C -0.072 4.072 21 C -0.127 4.127 22 C -0.170 4.170 23 C -0.022 4.022 24 C 0.197 3.803 25 N -0.295 5.295 26 C -0.025 4.025 27 C -0.072 4.072 28 N -0.316 5.316 29 N -0.117 5.117 30 O -0.154 6.154 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.371 0.629 35 H 0.250 0.750 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.240 0.760 45 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -21.280 -20.366 29.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.028 3.972 3 H 0.067 0.933 4 C 0.064 3.936 5 H 0.095 0.905 6 N -0.369 5.369 7 C -0.366 4.366 8 H 0.104 0.896 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.183 1.183 13 H -0.224 1.224 14 H -0.226 1.226 15 C -0.187 4.187 16 C -0.012 4.012 17 N -0.331 5.331 18 C 0.395 3.605 19 O -0.439 6.439 20 C -0.125 4.125 21 C -0.148 4.148 22 C -0.189 4.189 23 C -0.074 4.074 24 C 0.078 3.922 25 N -0.090 5.090 26 C -0.176 4.176 27 C -0.229 4.229 28 N -0.182 5.182 29 N -0.097 5.097 30 O -0.050 6.050 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.202 0.798 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.116 0.884 40 H 0.182 0.818 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.257 0.743 45 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.967 -19.961 -21.194 29.130 hybrid contribution 0.411 0.433 1.730 1.830 sum 1.378 -19.528 -19.464 27.606 Atomic orbital electron populations 1.21951 0.93465 1.02775 1.02078 1.21745 0.95422 0.95492 0.84547 0.93267 1.21425 0.94868 0.91073 0.86245 0.90474 1.42542 1.81297 1.09292 1.03745 1.19657 1.36871 0.95469 0.84632 0.89576 1.25596 1.03137 0.95846 1.02260 1.69842 1.54750 1.04344 1.33316 0.85069 0.76474 0.78106 0.80066 1.18308 1.22428 1.22552 1.23409 0.99076 1.01594 0.94626 1.22591 0.95474 0.87787 0.95364 1.48522 1.51343 1.29059 1.04173 1.16523 0.80080 0.83310 0.80581 1.90849 1.42056 1.27653 1.83298 1.21750 1.03945 0.91358 0.95451 1.22230 1.00532 1.01004 0.91050 1.21959 1.00240 0.94558 1.02187 1.22922 1.02400 0.99961 0.82133 1.20933 0.70880 0.90379 1.09986 1.47789 1.10170 1.25495 1.25545 1.24500 0.86595 1.04662 1.01803 1.24261 1.02428 0.97183 0.99002 1.75089 1.03997 1.21272 1.17843 1.78290 1.04432 1.10572 1.16370 1.84097 1.54101 1.34786 1.31986 0.91712 0.92720 0.90905 0.79752 0.94136 0.92969 0.88515 0.89532 0.88389 0.81779 0.79758 0.81316 0.81580 0.74338 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 9.10 71.98 0.65 -4.05 16 2 C 0.13 4.68 3.21 45.34 0.15 4.83 16 3 H 0.05 2.06 7.69 -2.39 -0.02 2.05 16 4 C 0.17 6.38 3.11 46.18 0.14 6.52 16 5 H 0.08 2.70 7.84 -2.39 -0.02 2.68 16 6 N -0.73 -35.29 5.25 -317.32 -1.67 -36.96 16 7 C -0.23 -12.29 9.98 84.03 0.84 -11.45 16 8 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16 9 C -0.08 -4.24 5.50 84.86 0.47 -3.78 16 10 N -0.97 -58.97 13.06 21.65 0.28 -58.68 16 11 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 15 C -0.15 -4.48 6.76 31.98 0.22 -4.27 16 16 C 0.11 2.69 6.17 86.83 0.54 3.22 16 17 N -0.60 -18.61 3.07 -792.46 -2.43 -21.04 16 18 C 0.61 19.71 7.61 86.44 0.66 20.37 16 19 O -0.56 -21.65 15.92 -4.34 -0.07 -21.72 16 20 C -0.07 -1.87 6.93 24.08 0.17 -1.70 16 21 C -0.13 -2.82 10.62 22.39 0.24 -2.58 16 22 C -0.17 -2.67 10.77 22.07 0.24 -2.43 16 23 C -0.02 -0.30 6.69 24.97 0.17 -0.14 16 24 C 0.20 0.95 6.98 85.63 0.60 1.55 16 25 N -0.30 -3.75 3.43 -351.47 -1.20 -4.96 16 26 C -0.03 -0.23 11.57 83.49 0.97 0.74 16 27 C -0.07 -1.09 12.05 83.73 1.01 -0.08 16 28 N -0.32 -7.63 12.41 -58.25 -0.72 -8.36 16 29 N -0.12 -2.58 12.93 37.02 0.48 -2.10 16 30 O -0.15 -3.06 7.86 -5.04 -0.04 -3.10 16 31 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.05 1.87 6.90 -2.39 -0.02 1.85 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.37 20.03 7.51 -92.71 -0.70 19.33 16 35 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.09 1.96 6.23 -2.38 -0.01 1.94 16 39 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.16 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 42 H 0.17 -0.53 8.07 -2.39 -0.02 -0.55 16 43 H 0.17 -0.22 8.14 -2.38 -0.02 -0.24 16 44 H 0.24 -0.32 8.06 -2.91 -0.02 -0.34 16 45 H 0.21 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -81.30 383.29 4.03 -77.27 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.33 Total: 26.25 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 7.04 Total: 6.75 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -5.26 Total: -132.10 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.11 Total: -24.82 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -81.30 4.03 -77.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986599383.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.808 kcal (2) G-P(sol) polarization free energy of solvation -81.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds