Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99548 * 2 1 4 4 C 1.54326 * 109.99393 * 238.96336 * 2 1 3 5 5 H 1.09003 * 110.85282 * 100.19245 * 4 2 1 6 6 N 1.46501 * 110.66820 * 337.04372 * 4 2 1 7 7 C 1.36940 * 120.00117 * 97.24656 * 6 4 2 8 8 H 1.08003 * 119.99682 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00174 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99914 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46980 * 90.00085 * 11 9 7 13 13 H 1.48504 * 109.46787 * 209.99837 * 11 9 7 14 14 H 1.48498 * 109.46857 * 329.99483 * 11 9 7 15 15 C 1.55155 * 103.02189 * 218.66038 * 4 2 1 16 16 C 1.54913 * 101.57964 * 35.30696 * 15 4 2 17 17 N 1.47023 * 109.88487 * 121.09042 * 2 1 3 18 18 C 1.34772 * 125.64869 * 298.40202 * 17 2 1 19 19 O 1.21282 * 120.00651 * 359.71078 * 18 17 2 20 20 C 1.50704 * 119.99961 * 179.71339 * 18 17 2 21 21 N 1.46494 * 109.47268 * 179.97438 * 20 18 17 22 22 N 1.40168 * 126.20984 * 270.00154 * 21 20 18 23 23 C 1.31268 * 107.88519 * 180.02562 * 22 21 20 24 24 C 1.41798 * 132.00854 * 180.02562 * 23 22 21 25 25 C 1.35522 * 119.32090 * 179.21896 * 24 23 22 26 26 C 1.40994 * 119.86142 * 0.66939 * 25 24 23 27 27 C 1.34458 * 120.59964 * 359.57809 * 26 25 24 28 28 N 1.37465 * 120.68050 * 359.97438 * 27 26 25 29 29 C 1.34820 * 131.80230 * 180.02562 * 28 27 26 30 30 O 1.21888 * 126.06257 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47123 * 304.35079 * 1 2 3 32 32 H 1.09002 * 109.47110 * 64.35532 * 1 2 3 33 33 H 1.09002 * 109.46755 * 184.35646 * 1 2 3 34 34 H 0.96997 * 120.00087 * 277.25143 * 6 4 2 35 35 H 0.96997 * 119.99764 * 180.02562 * 10 9 7 36 36 H 1.08998 * 111.00618 * 277.23161 * 15 4 2 37 37 H 1.09003 * 111.03759 * 153.39525 * 15 4 2 38 38 H 1.08998 * 110.36643 * 204.15129 * 16 15 4 39 39 H 1.09007 * 110.36360 * 81.82904 * 16 15 4 40 40 H 1.09000 * 109.47178 * 59.99678 * 20 18 17 41 41 H 1.09000 * 109.47121 * 299.99968 * 20 18 17 42 42 H 1.07999 * 120.33870 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.06850 * 180.21865 * 25 24 23 44 44 H 1.08001 * 119.70541 * 179.59047 * 26 25 24 45 45 H 1.07998 * 119.65770 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2426 5 1 2.3597 -0.0449 -2.0191 6 7 1.0484 -1.6789 -1.7531 7 6 0.2390 -1.3083 -2.7937 8 1 0.3445 -0.3295 -3.2378 9 6 -0.7177 -2.1904 -3.2771 10 7 -0.8465 -3.3831 -2.7355 11 14 -1.8212 -1.6851 -4.6971 12 1 -1.1805 -2.0656 -5.9816 13 1 -3.1316 -2.3731 -4.5746 14 1 -2.0289 -0.2151 -4.6637 15 6 3.2865 -1.5182 -0.6914 16 6 2.8100 -1.8824 0.7369 17 7 2.0301 -0.7139 1.1840 18 6 1.8074 -0.3619 2.4657 19 8 1.1475 0.6239 2.7180 20 6 2.3784 -1.1932 3.5855 21 7 1.9983 -0.6058 4.8726 22 7 2.7222 0.3569 5.5895 23 6 2.0565 0.6260 6.6885 24 6 2.3193 1.5116 7.7643 25 6 1.4308 1.5991 8.7839 26 6 0.2675 0.8026 8.7717 27 6 0.0252 -0.0394 7.7518 28 7 0.9058 -0.1403 6.7011 29 6 0.8888 -0.8940 5.5834 30 8 0.0220 -1.6910 5.2686 31 1 -0.3633 0.5799 0.8484 32 1 -0.3633 0.4448 -0.9264 33 1 -0.3633 -1.0247 0.0781 34 1 0.9534 -2.5578 -1.3540 35 1 -1.5148 -3.9995 -3.0735 36 1 4.1670 -0.8766 -0.6579 37 1 3.4815 -2.4154 -1.2789 38 1 3.6656 -2.0410 1.3933 39 1 2.1803 -2.7717 0.7115 40 1 3.4651 -1.2157 3.5036 41 1 1.9880 -2.2087 3.5198 42 1 3.2122 2.1191 7.7652 43 1 1.6172 2.2723 9.6077 44 1 -0.4356 0.8696 9.5888 45 1 -0.8709 -0.6421 7.7578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986626669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = 78.503573 kcal Electronic energy + Delta-G solvation = -30294.203515 eV Core-core repulsion = 26122.532041 eV Total energy + Delta-G solvation = -4171.671475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.18167 -39.98079 -38.63233 -37.50006 -37.07950 -34.13980 -34.00378 -32.86052 -31.57753 -30.74354 -29.68493 -28.99338 -27.81901 -25.25246 -24.53399 -23.39566 -23.32710 -22.58690 -21.91338 -19.97358 -18.73655 -18.64014 -17.71666 -17.61086 -17.24394 -16.77591 -16.44908 -15.91372 -15.74241 -15.29333 -14.88867 -14.83859 -14.50094 -14.02842 -13.61940 -13.52828 -13.46221 -13.20907 -12.92538 -12.71165 -12.59335 -12.35702 -12.22060 -12.18792 -11.96078 -11.50592 -11.34000 -10.92725 -10.88519 -10.87327 -10.63204 -10.54770 -10.50495 -10.22795 -10.11152 -10.06311 -9.68078 -9.33593 -8.96922 -8.29416 -7.93356 -7.05188 -5.82602 -3.12080 0.23377 1.23196 1.30456 2.31709 2.66135 2.79226 3.05450 3.29823 3.41076 3.47185 3.48358 3.78133 4.28069 4.40075 4.52530 4.55097 4.61795 4.76970 4.79297 4.92983 4.97921 5.21754 5.28013 5.35501 5.48868 5.55227 5.60108 5.67867 5.70905 5.75616 5.82973 5.84736 5.99508 6.07965 6.21478 6.27555 6.33286 6.43434 6.54933 6.65251 6.83367 7.02468 7.27247 7.34626 7.65386 7.69888 7.82288 8.34187 8.36640 9.46880 10.00322 10.35425 11.39409 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002428 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.729176 B =11528.976464 C =12077.392980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.060 0.940 4 C 0.171 3.829 5 H 0.077 0.923 6 N -0.708 5.708 7 C -0.241 4.241 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.905 3.095 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.144 4.144 16 C 0.096 3.904 17 N -0.601 5.601 18 C 0.510 3.490 19 O -0.532 6.532 20 C 0.145 3.855 21 N -0.416 5.416 22 N -0.274 5.274 23 C 0.291 3.709 24 C -0.119 4.119 25 C -0.046 4.046 26 C -0.189 4.189 27 C 0.134 3.866 28 N -0.480 5.480 29 C 0.651 3.349 30 O -0.532 6.532 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.385 0.615 35 H 0.256 0.744 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.157 0.843 43 H 0.148 0.852 44 H 0.155 0.845 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 6.832 23.859 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.005 3.995 3 H 0.078 0.922 4 C 0.058 3.942 5 H 0.094 0.906 6 N -0.347 5.347 7 C -0.372 4.372 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.577 5.577 11 Si 0.736 3.264 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.184 4.184 16 C -0.027 4.027 17 N -0.336 5.336 18 C 0.295 3.705 19 O -0.408 6.408 20 C 0.020 3.980 21 N -0.233 5.233 22 N -0.099 5.099 23 C 0.025 3.975 24 C -0.141 4.141 25 C -0.071 4.071 26 C -0.212 4.212 27 C 0.015 3.985 28 N -0.196 5.196 29 C 0.352 3.648 30 O -0.404 6.404 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.175 0.825 43 H 0.165 0.835 44 H 0.172 0.828 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 10.100 6.901 22.807 25.880 hybrid contribution -1.399 -0.257 -0.308 1.456 sum 8.701 6.644 22.499 25.021 Atomic orbital electron populations 1.21750 0.93701 1.02838 1.00734 1.22777 0.96198 0.95424 0.85115 0.92191 1.21253 0.88500 0.92265 0.92190 0.90551 1.42332 1.38556 1.15131 1.38695 1.19191 1.11057 0.99143 1.07790 0.91048 1.24731 0.99726 0.96263 0.99818 1.69650 1.37294 1.07010 1.43742 0.86220 0.80191 0.77671 0.82275 1.21703 1.21812 1.20717 1.23156 0.98633 1.01902 0.94674 1.22408 0.94621 0.89097 0.96525 1.48593 1.51927 1.28328 1.04701 1.20273 0.81412 0.85947 0.82836 1.90709 1.39688 1.27428 1.83020 1.21366 1.02804 0.96926 0.76884 1.48154 1.19114 1.36997 1.19074 1.77733 1.18839 1.10036 1.03293 1.21522 0.84817 0.95201 0.95956 1.20251 1.02877 0.99616 0.91354 1.21172 0.92120 0.96453 0.97352 1.20770 1.00679 0.99816 0.99887 1.21726 0.93616 0.98268 0.84932 1.43487 1.20786 1.35766 1.19525 1.16430 0.84341 0.83421 0.80633 1.91163 1.38913 1.37682 1.72609 0.94402 0.91367 0.91567 0.78059 0.93427 0.90950 0.89337 0.91364 0.90758 0.85572 0.85560 0.82537 0.83476 0.82776 0.81357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 2 C 0.11 2.07 3.43 -66.95 -0.23 1.84 16 3 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.17 3.14 3.53 -66.09 -0.23 2.91 16 5 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 6 N -0.71 -16.35 3.81 -51.65 -0.20 -16.54 16 7 C -0.24 -6.29 8.62 -15.06 -0.13 -6.42 16 8 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 9 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 10 N -0.93 -27.24 13.06 55.49 0.72 -26.51 16 11 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 C -0.14 -2.05 6.70 -24.58 -0.16 -2.22 16 16 C 0.10 1.31 6.62 -2.53 -0.02 1.29 16 17 N -0.60 -10.04 3.06 -163.01 -0.50 -10.54 16 18 C 0.51 9.00 7.71 -10.99 -0.08 8.91 16 19 O -0.53 -11.58 15.54 5.56 0.09 -11.49 16 20 C 0.14 2.00 5.86 -5.19 -0.03 1.96 16 21 N -0.42 -6.49 3.11 -66.31 -0.21 -6.69 16 22 N -0.27 -3.93 12.62 31.35 0.40 -3.53 16 23 C 0.29 3.51 7.87 -155.67 -1.23 2.28 16 24 C -0.12 -0.89 10.12 -39.19 -0.40 -1.29 16 25 C -0.05 -0.23 10.06 -39.51 -0.40 -0.63 16 26 C -0.19 -1.04 9.97 -39.87 -0.40 -1.43 16 27 C 0.13 1.18 10.90 -16.36 -0.18 1.00 16 28 N -0.48 -6.23 2.93 -66.47 -0.19 -6.42 16 29 C 0.65 10.80 8.70 -86.78 -0.75 10.04 16 30 O -0.53 -10.33 17.86 5.02 0.09 -10.24 16 31 H 0.04 0.84 7.01 -51.93 -0.36 0.48 16 32 H 0.07 1.53 7.32 -51.93 -0.38 1.15 16 33 H 0.07 1.60 7.55 -51.93 -0.39 1.21 16 34 H 0.39 9.56 7.86 -40.82 -0.32 9.24 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.13 1.28 7.85 -51.93 -0.41 0.88 16 41 H 0.13 1.57 8.09 -51.93 -0.42 1.15 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.15 0.23 8.06 -52.48 -0.42 -0.20 16 44 H 0.15 0.35 8.06 -52.49 -0.42 -0.08 16 45 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -37.19 378.67 -9.17 -46.36 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.02 Total: 7.53 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: -4.03 Total: 15.34 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: 0.02 Total: -70.25 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.18 Total: -21.73 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.19 -9.17 -46.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.869 kcal (2) G-P(sol) polarization free energy of solvation -37.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds