Wall clock time and date at job start Wed Apr 1 2020 05:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.99548 * 2 1 4 4 C 1.54326 * 109.99393 * 238.96336 * 2 1 3 5 5 H 1.09003 * 110.85282 * 100.19245 * 4 2 1 6 6 N 1.46501 * 110.66820 * 337.04372 * 4 2 1 7 7 C 1.36940 * 120.00117 * 97.24656 * 6 4 2 8 8 H 1.08003 * 119.99682 * 359.97438 * 7 6 4 9 9 C 1.38812 * 120.00174 * 180.02562 * 7 6 4 10 10 N 1.31621 * 119.99914 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.46980 * 90.00085 * 11 9 7 13 13 H 1.48504 * 109.46787 * 209.99837 * 11 9 7 14 14 H 1.48498 * 109.46857 * 329.99483 * 11 9 7 15 15 C 1.55155 * 103.02189 * 218.66038 * 4 2 1 16 16 C 1.54913 * 101.57964 * 35.30696 * 15 4 2 17 17 N 1.47023 * 109.88487 * 121.09042 * 2 1 3 18 18 C 1.34772 * 125.64869 * 298.40202 * 17 2 1 19 19 O 1.21282 * 120.00651 * 359.71078 * 18 17 2 20 20 C 1.50704 * 119.99961 * 179.71339 * 18 17 2 21 21 N 1.46494 * 109.47268 * 179.97438 * 20 18 17 22 22 N 1.40168 * 126.20984 * 270.00154 * 21 20 18 23 23 C 1.31268 * 107.88519 * 180.02562 * 22 21 20 24 24 C 1.41798 * 132.00854 * 180.02562 * 23 22 21 25 25 C 1.35522 * 119.32090 * 179.21896 * 24 23 22 26 26 C 1.40994 * 119.86142 * 0.66939 * 25 24 23 27 27 C 1.34458 * 120.59964 * 359.57809 * 26 25 24 28 28 N 1.37465 * 120.68050 * 359.97438 * 27 26 25 29 29 C 1.34820 * 131.80230 * 180.02562 * 28 27 26 30 30 O 1.21888 * 126.06257 * 359.97438 * 29 28 27 31 31 H 1.08999 * 109.47123 * 304.35079 * 1 2 3 32 32 H 1.09002 * 109.47110 * 64.35532 * 1 2 3 33 33 H 1.09002 * 109.46755 * 184.35646 * 1 2 3 34 34 H 0.96997 * 120.00087 * 277.25143 * 6 4 2 35 35 H 0.96997 * 119.99764 * 180.02562 * 10 9 7 36 36 H 1.08998 * 111.00618 * 277.23161 * 15 4 2 37 37 H 1.09003 * 111.03759 * 153.39525 * 15 4 2 38 38 H 1.08998 * 110.36643 * 204.15129 * 16 15 4 39 39 H 1.09007 * 110.36360 * 81.82904 * 16 15 4 40 40 H 1.09000 * 109.47178 * 59.99678 * 20 18 17 41 41 H 1.09000 * 109.47121 * 299.99968 * 20 18 17 42 42 H 1.07999 * 120.33870 * 359.97438 * 24 23 22 43 43 H 1.08003 * 120.06850 * 180.21865 * 25 24 23 44 44 H 1.08001 * 119.70541 * 179.59047 * 26 25 24 45 45 H 1.07998 * 119.65770 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2426 5 1 2.3597 -0.0449 -2.0191 6 7 1.0484 -1.6789 -1.7531 7 6 0.2390 -1.3083 -2.7937 8 1 0.3445 -0.3295 -3.2378 9 6 -0.7177 -2.1904 -3.2771 10 7 -0.8465 -3.3831 -2.7355 11 14 -1.8212 -1.6851 -4.6971 12 1 -1.1805 -2.0656 -5.9816 13 1 -3.1316 -2.3731 -4.5746 14 1 -2.0289 -0.2151 -4.6637 15 6 3.2865 -1.5182 -0.6914 16 6 2.8100 -1.8824 0.7369 17 7 2.0301 -0.7139 1.1840 18 6 1.8074 -0.3619 2.4657 19 8 1.1475 0.6239 2.7180 20 6 2.3784 -1.1932 3.5855 21 7 1.9983 -0.6058 4.8726 22 7 2.7222 0.3569 5.5895 23 6 2.0565 0.6260 6.6885 24 6 2.3193 1.5116 7.7643 25 6 1.4308 1.5991 8.7839 26 6 0.2675 0.8026 8.7717 27 6 0.0252 -0.0394 7.7518 28 7 0.9058 -0.1403 6.7011 29 6 0.8888 -0.8940 5.5834 30 8 0.0220 -1.6910 5.2686 31 1 -0.3633 0.5799 0.8484 32 1 -0.3633 0.4448 -0.9264 33 1 -0.3633 -1.0247 0.0781 34 1 0.9534 -2.5578 -1.3540 35 1 -1.5148 -3.9995 -3.0735 36 1 4.1670 -0.8766 -0.6579 37 1 3.4815 -2.4154 -1.2789 38 1 3.6656 -2.0410 1.3933 39 1 2.1803 -2.7717 0.7115 40 1 3.4651 -1.2157 3.5036 41 1 1.9880 -2.2087 3.5198 42 1 3.2122 2.1191 7.7652 43 1 1.6172 2.2723 9.6077 44 1 -0.4356 0.8696 9.5888 45 1 -0.8709 -0.6421 7.7578 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986626669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:57 Heat of formation + Delta-G solvation = 53.271123 kcal Electronic energy + Delta-G solvation = -30295.297676 eV Core-core repulsion = 26122.532041 eV Total energy + Delta-G solvation = -4172.765636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -44.12186 -41.35429 -39.62194 -38.90228 -38.15370 -35.81114 -34.94985 -33.86492 -33.23983 -32.20628 -30.97908 -30.11597 -28.96828 -26.86950 -25.56172 -25.14745 -24.16269 -23.72457 -22.98590 -21.36773 -20.07786 -19.55546 -19.41427 -18.68975 -18.46993 -17.82355 -17.60723 -17.20357 -16.76131 -16.48980 -16.01709 -15.92517 -15.74101 -15.39737 -15.34636 -15.12698 -14.60880 -14.55868 -14.14850 -13.97285 -13.80565 -13.44295 -13.24131 -13.13695 -13.05021 -13.02140 -12.81824 -12.67959 -12.46662 -12.32971 -12.23062 -11.89243 -11.73857 -11.65545 -11.60410 -11.52782 -11.33062 -10.96094 -10.49393 -9.70891 -9.01818 -8.78498 -7.93674 -5.20546 -0.42985 0.34314 0.51941 1.22600 1.42369 1.45976 1.47373 1.54460 1.77008 2.04985 2.40597 2.55480 2.93146 3.29299 3.41980 3.63798 3.69335 3.75825 3.87183 3.95628 3.96305 4.03375 4.06587 4.22895 4.26495 4.37003 4.48793 4.58774 4.61511 4.66256 4.74052 4.78038 4.94826 4.96184 5.07073 5.08739 5.24393 5.25824 5.30113 5.36507 5.41755 5.45155 5.56015 5.66020 6.27753 6.29397 6.46873 6.61711 6.99324 7.35769 8.09039 8.32249 9.29271 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.002428 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.729176 B =11528.976464 C =12077.392980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.115 3.885 3 H 0.066 0.934 4 C 0.163 3.837 5 H 0.082 0.918 6 N -0.716 5.716 7 C -0.226 4.226 8 H 0.077 0.923 9 C -0.072 4.072 10 N -0.966 5.966 11 Si 0.962 3.038 12 H -0.285 1.285 13 H -0.303 1.303 14 H -0.274 1.274 15 C -0.128 4.128 16 C 0.094 3.906 17 N -0.600 5.600 18 C 0.504 3.496 19 O -0.582 6.582 20 C 0.147 3.853 21 N -0.421 5.421 22 N -0.311 5.311 23 C 0.289 3.711 24 C -0.138 4.138 25 C -0.021 4.021 26 C -0.151 4.151 27 C 0.080 3.920 28 N -0.482 5.482 29 C 0.631 3.369 30 O -0.582 6.582 31 H 0.022 0.978 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.375 0.625 35 H 0.248 0.752 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.061 0.939 40 H 0.168 0.832 41 H 0.136 0.864 42 H 0.182 0.818 43 H 0.199 0.801 44 H 0.198 0.802 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.672 8.650 26.576 30.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.009 3.991 3 H 0.084 0.916 4 C 0.052 3.948 5 H 0.100 0.900 6 N -0.354 5.354 7 C -0.358 4.358 8 H 0.094 0.906 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.792 3.208 12 H -0.212 1.212 13 H -0.230 1.230 14 H -0.199 1.199 15 C -0.167 4.167 16 C -0.028 4.028 17 N -0.333 5.333 18 C 0.292 3.708 19 O -0.462 6.462 20 C 0.023 3.977 21 N -0.238 5.238 22 N -0.138 5.138 23 C 0.026 3.974 24 C -0.160 4.160 25 C -0.045 4.045 26 C -0.173 4.173 27 C -0.037 4.037 28 N -0.197 5.197 29 C 0.331 3.669 30 O -0.458 6.458 31 H 0.041 0.959 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.207 0.793 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.186 0.814 41 H 0.154 0.846 42 H 0.199 0.801 43 H 0.216 0.784 44 H 0.215 0.785 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 12.512 8.770 25.563 29.782 hybrid contribution -2.133 -0.637 -0.897 2.400 sum 10.380 8.133 24.666 27.970 Atomic orbital electron populations 1.21539 0.96431 1.00123 0.99269 1.22533 0.93791 0.96240 0.86551 0.91590 1.21495 0.89124 0.92214 0.91990 0.89979 1.42442 1.39379 1.15424 1.38155 1.19526 1.10254 0.98728 1.07326 0.90552 1.25414 1.01788 0.96678 1.02595 1.69792 1.38290 1.08094 1.45539 0.85308 0.78077 0.77452 0.79958 1.21202 1.23024 1.19870 1.23087 0.97446 1.01892 0.94267 1.22644 0.95628 0.87189 0.97322 1.48628 1.51790 1.28832 1.04037 1.21003 0.80572 0.85604 0.83648 1.90675 1.41899 1.29804 1.83833 1.21529 1.04911 0.96139 0.75125 1.48327 1.18967 1.37184 1.19275 1.77706 1.19806 1.11510 1.04803 1.22402 0.83917 0.94865 0.96258 1.20762 1.04894 0.99572 0.90725 1.21833 0.90226 0.95246 0.97217 1.21441 1.00759 0.96372 0.98710 1.22262 0.94409 1.01321 0.85669 1.43572 1.21690 1.35090 1.19329 1.16770 0.84366 0.83859 0.81880 1.91093 1.40587 1.39985 1.74142 0.95874 0.92676 0.94727 0.79274 0.94306 0.87556 0.89096 0.86299 0.92017 0.81443 0.84645 0.80054 0.78441 0.78486 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.12 4.32 3.43 45.34 0.16 4.48 16 3 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.16 5.85 3.53 46.18 0.16 6.02 16 5 H 0.08 2.88 8.05 -2.39 -0.02 2.86 16 6 N -0.72 -33.46 3.81 -317.32 -1.21 -34.67 16 7 C -0.23 -11.97 8.62 84.03 0.72 -11.24 16 8 H 0.08 3.90 7.82 -2.91 -0.02 3.88 16 9 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 10 N -0.97 -58.49 13.06 21.65 0.28 -58.20 16 11 Si 0.96 46.34 29.55 68.60 2.03 48.36 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 13 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 C -0.13 -3.30 6.70 31.99 0.21 -3.09 16 16 C 0.09 2.34 6.62 86.86 0.58 2.92 16 17 N -0.60 -19.74 3.06 -788.04 -2.41 -22.16 16 18 C 0.50 17.99 7.71 87.66 0.68 18.66 16 19 O -0.58 -26.34 15.54 -3.03 -0.05 -26.39 16 20 C 0.15 4.01 5.86 85.64 0.50 4.51 16 21 N -0.42 -13.47 3.11 -481.79 -1.50 -14.97 16 22 N -0.31 -8.93 12.62 -54.72 -0.69 -9.62 16 23 C 0.29 6.77 7.87 134.32 1.06 7.83 16 24 C -0.14 -1.64 10.12 22.52 0.23 -1.41 16 25 C -0.02 -0.10 10.06 22.32 0.22 0.12 16 26 C -0.15 -1.05 9.97 22.08 0.22 -0.83 16 27 C 0.08 1.35 10.90 82.94 0.90 2.26 16 28 N -0.48 -12.70 2.93 -482.32 -1.41 -14.12 16 29 C 0.63 22.07 8.70 179.01 1.56 23.63 16 30 O -0.58 -24.33 17.86 -4.95 -0.09 -24.42 16 31 H 0.02 1.08 7.01 -2.39 -0.02 1.06 16 32 H 0.05 2.58 7.32 -2.39 -0.02 2.56 16 33 H 0.03 1.75 7.55 -2.39 -0.02 1.74 16 34 H 0.37 19.06 7.86 -92.71 -0.73 18.33 16 35 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 36 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.12 1.84 7.48 -2.39 -0.02 1.82 16 39 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.17 3.01 7.85 -2.39 -0.02 3.00 16 41 H 0.14 3.40 8.09 -2.39 -0.02 3.38 16 42 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 43 H 0.20 -0.87 8.06 -2.91 -0.02 -0.90 16 44 H 0.20 -0.28 8.06 -2.91 -0.02 -0.30 16 45 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -89.31 378.67 3.50 -85.81 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.30 Total: 24.80 kcal Atomic # 6 Polarization: 37.32 SS G_CDS: 8.25 Total: 45.57 kcal Atomic # 7 Polarization: -146.80 SS G_CDS: -6.94 Total: -153.74 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.14 Total: -50.80 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Total: -89.31 3.50 -85.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986626669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.083 kcal (2) G-P(sol) polarization free energy of solvation -89.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds