Wall clock time and date at job start Wed Apr 1 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.99928 * 2 1 4 4 C 1.54330 * 109.99421 * 238.96005 * 2 1 3 5 5 H 1.09005 * 110.84653 * 100.19928 * 4 2 1 6 6 N 1.46505 * 110.66864 * 337.05076 * 4 2 1 7 7 C 1.36940 * 119.99712 * 97.24408 * 6 4 2 8 8 H 1.07997 * 120.00447 * 359.97438 * 7 6 4 9 9 C 1.38816 * 119.99495 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00195 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99765 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47146 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46868 * 120.00095 * 11 9 7 14 14 H 1.48497 * 109.47378 * 239.99928 * 11 9 7 15 15 C 1.55158 * 103.02352 * 218.66693 * 4 2 1 16 16 C 1.54905 * 101.58092 * 35.30877 * 15 4 2 17 17 N 1.47030 * 109.88207 * 121.09706 * 2 1 3 18 18 C 1.34776 * 125.64573 * 298.39772 * 17 2 1 19 19 O 1.21281 * 120.00231 * 359.71343 * 18 17 2 20 20 C 1.50703 * 119.99846 * 179.97438 * 18 17 2 21 21 C 1.50705 * 109.47036 * 179.72300 * 20 18 17 22 22 C 1.34235 * 126.49319 * 265.02441 * 21 20 18 23 23 N 1.36807 * 109.93208 * 179.97438 * 22 21 20 24 24 H 0.96996 * 125.06842 * 180.02562 * 23 22 21 25 25 C 1.37807 * 109.86424 * 359.97438 * 23 22 21 26 26 C 1.39101 * 133.39878 * 180.02562 * 25 23 22 27 27 C 1.37713 * 119.95154 * 179.31283 * 26 25 23 28 28 C 1.39042 * 120.65030 * 0.56142 * 27 26 25 29 29 F 1.35095 * 119.83332 * 179.62055 * 28 27 26 30 30 C 1.37790 * 120.32886 * 359.63952 * 28 27 26 31 31 C 1.39665 * 119.63183 * 0.02562 * 30 28 27 32 32 H 1.08998 * 109.46998 * 304.35524 * 1 2 3 33 33 H 1.08997 * 109.46521 * 64.35376 * 1 2 3 34 34 H 1.08999 * 109.46963 * 184.35042 * 1 2 3 35 35 H 0.96996 * 119.99895 * 277.24877 * 6 4 2 36 36 H 0.96998 * 119.99967 * 180.02562 * 10 9 7 37 37 H 1.09002 * 111.00352 * 277.22996 * 15 4 2 38 38 H 1.09007 * 111.03465 * 153.39909 * 15 4 2 39 39 H 1.08995 * 110.36592 * 204.15381 * 16 15 4 40 40 H 1.08998 * 110.36981 * 81.82677 * 16 15 4 41 41 H 1.09003 * 109.46584 * 299.71648 * 20 18 17 42 42 H 1.08993 * 109.47307 * 59.72300 * 20 18 17 43 43 H 1.08007 * 125.03845 * 359.92114 * 22 21 20 44 44 H 1.07994 * 120.02174 * 359.95592 * 26 25 23 45 45 H 1.07999 * 119.67965 * 180.20798 * 27 26 25 46 46 H 1.08001 * 120.17884 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2426 5 1 2.3599 -0.0449 -2.0191 6 7 1.0484 -1.6789 -1.7532 7 6 0.2391 -1.3082 -2.7938 8 1 0.3446 -0.3294 -3.2379 9 6 -0.7176 -2.1902 -3.2772 10 7 -0.8473 -3.3825 -2.7350 11 14 -1.8221 -1.6844 -4.6963 12 1 -1.4788 -0.3041 -5.1230 13 1 -1.6251 -2.6182 -5.8340 14 1 -3.2407 -1.7286 -4.2596 15 6 3.2864 -1.5184 -0.6914 16 6 2.8100 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1840 18 6 1.8073 -0.3621 2.4657 19 8 1.1475 0.6237 2.7180 20 6 2.3832 -1.1902 3.5855 21 6 1.9963 -0.5831 4.9095 22 6 2.7295 0.2709 5.6409 23 7 2.0536 0.6072 6.7818 24 1 2.3815 1.2109 7.4664 25 6 0.8367 -0.0389 6.8128 26 6 -0.2159 -0.0513 7.7220 27 6 -1.3384 -0.8062 7.4641 28 6 -1.4285 -1.5694 6.3053 29 9 -2.5342 -2.3099 6.0726 30 6 -0.3955 -1.5746 5.3935 31 6 0.7461 -0.8082 5.6390 32 1 -0.3633 0.5799 0.8484 33 1 -0.3632 0.4448 -0.9264 34 1 -0.3633 -1.0247 0.0780 35 1 0.9533 -2.5578 -1.3540 36 1 -1.5156 -3.9990 -3.0731 37 1 4.1671 -0.8769 -0.6578 38 1 3.4814 -2.4156 -1.2789 39 1 3.6655 -2.0412 1.3933 40 1 2.1801 -2.7718 0.7115 41 1 1.9930 -2.2061 3.5237 42 1 3.4695 -1.2122 3.4995 43 1 3.7084 0.6376 5.3694 44 1 -0.1572 0.5388 8.6246 45 1 -2.1545 -0.8100 8.1715 46 1 -0.4682 -2.1679 4.4941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987059648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:48 Heat of formation + Delta-G solvation = -2.869924 kcal Electronic energy + Delta-G solvation = -30076.020296 eV Core-core repulsion = 25880.900240 eV Total energy + Delta-G solvation = -4195.120056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -48.74849 -41.44189 -39.70081 -37.37473 -36.69716 -33.94600 -33.19672 -31.54505 -30.73702 -30.28288 -29.04805 -28.82642 -26.93570 -25.17483 -23.37116 -23.23300 -22.40987 -22.04348 -20.38826 -19.32793 -18.42355 -17.98517 -17.47097 -17.28519 -16.57990 -16.34164 -15.83078 -15.51600 -15.33400 -14.82857 -14.57864 -14.24791 -14.14954 -13.90432 -13.51954 -13.47916 -13.32917 -13.08613 -12.94057 -12.73185 -12.58278 -12.41889 -12.32376 -11.78061 -11.40092 -11.39105 -11.29304 -10.92464 -10.87700 -10.82351 -10.57662 -10.44677 -10.13514 -10.01640 -9.86570 -9.65702 -9.30766 -8.94729 -8.27078 -8.13776 -7.78355 -7.01936 -5.80639 -3.09643 0.86471 1.31222 2.43984 2.90963 3.04772 3.42180 3.46354 3.48826 3.50536 3.67339 4.22681 4.47477 4.56400 4.65861 4.76636 4.90139 4.97769 5.03059 5.08183 5.19490 5.33494 5.41681 5.47970 5.50415 5.60247 5.63325 5.70247 5.76086 5.82425 5.90251 5.92108 6.10095 6.13568 6.16275 6.28240 6.33872 6.49085 6.52916 6.57106 6.63241 6.69982 6.89527 6.95181 7.11590 7.31794 7.39063 7.68032 8.02909 8.36835 8.62951 9.49172 10.03269 10.38423 11.41521 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002854 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.509631 B = 9807.865129 C =11223.433262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.110 3.890 3 H 0.057 0.943 4 C 0.170 3.830 5 H 0.074 0.926 6 N -0.709 5.709 7 C -0.239 4.239 8 H 0.072 0.928 9 C -0.009 4.009 10 N -0.929 5.929 11 Si 0.904 3.096 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C -0.146 4.146 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.523 3.477 19 O -0.537 6.537 20 C -0.064 4.064 21 C -0.145 4.145 22 C 0.069 3.931 23 N -0.593 5.593 24 H 0.416 0.584 25 C 0.086 3.914 26 C -0.103 4.103 27 C -0.133 4.133 28 C 0.069 3.931 29 F -0.142 7.142 30 C -0.099 4.099 31 C -0.064 4.064 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.385 0.615 36 H 0.255 0.745 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.623 4.901 21.006 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 H 0.075 0.925 4 C 0.057 3.943 5 H 0.091 0.909 6 N -0.348 5.348 7 C -0.370 4.370 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.735 3.265 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C -0.185 4.185 16 C -0.021 4.021 17 N -0.342 5.342 18 C 0.311 3.689 19 O -0.414 6.414 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.058 4.058 23 N -0.196 5.196 24 H 0.253 0.747 25 C -0.021 4.021 26 C -0.123 4.123 27 C -0.153 4.153 28 C 0.049 3.951 29 F -0.121 7.121 30 C -0.118 4.118 31 C -0.069 4.069 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.189 0.811 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.176 5.578 21.109 24.089 hybrid contribution -0.786 0.050 -0.423 0.894 sum 9.390 5.629 20.687 23.405 Atomic orbital electron populations 1.21746 0.93875 1.02726 1.00660 1.22671 0.96063 0.95271 0.85565 0.92511 1.21252 0.88494 0.92206 0.92300 0.90851 1.42330 1.38563 1.15162 1.38731 1.19237 1.10940 0.99086 1.07712 0.91049 1.24717 0.99744 0.96264 0.99838 1.69656 1.37257 1.07045 1.43774 0.86166 0.80669 0.77566 0.82070 1.20532 1.21922 1.21876 1.23155 0.98558 1.01740 0.95063 1.22285 0.94606 0.89219 0.96005 1.48667 1.52229 1.28177 1.05130 1.20178 0.80865 0.85602 0.82244 1.90682 1.39828 1.27701 1.83154 1.19962 1.01756 0.99638 0.89089 1.19565 0.94201 1.04491 0.96938 1.21549 0.98452 0.98613 0.87151 1.41625 1.14961 1.42067 1.20935 0.74680 1.18200 0.88334 0.98097 0.97424 1.19758 0.91674 1.01960 0.98948 1.20715 0.98911 0.98586 0.97101 1.17285 0.84656 0.96652 0.96520 1.91488 1.50929 1.74980 1.94726 1.20460 0.91791 1.00288 0.99298 1.18687 0.94592 0.99041 0.94538 0.94256 0.91640 0.91680 0.78084 0.93516 0.91178 0.89590 0.91557 0.91237 0.88354 0.88466 0.81149 0.85399 0.84609 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.08 37.16 0.30 -2.50 16 2 C 0.11 2.02 3.43 -66.94 -0.23 1.79 16 3 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.17 3.12 3.53 -66.09 -0.23 2.89 16 5 H 0.07 1.35 8.05 -51.93 -0.42 0.93 16 6 N -0.71 -16.30 3.81 -51.64 -0.20 -16.49 16 7 C -0.24 -6.22 8.62 -15.06 -0.13 -6.35 16 8 H 0.07 1.83 7.82 -52.49 -0.41 1.42 16 9 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 10 N -0.93 -27.07 13.06 55.49 0.72 -26.35 16 11 Si 0.90 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 C -0.15 -2.08 6.70 -24.58 -0.16 -2.24 16 16 C 0.10 1.37 6.63 -2.53 -0.02 1.36 16 17 N -0.61 -9.75 3.06 -163.01 -0.50 -10.25 16 18 C 0.52 8.46 7.63 -10.98 -0.08 8.38 16 19 O -0.54 -10.75 15.15 5.56 0.08 -10.67 16 20 C -0.06 -0.75 5.24 -29.03 -0.15 -0.91 16 21 C -0.14 -1.78 4.81 -102.71 -0.49 -2.28 16 22 C 0.07 0.66 11.73 -16.74 -0.20 0.46 16 23 N -0.59 -5.20 6.07 -10.64 -0.06 -5.27 16 24 H 0.42 2.15 8.96 -40.82 -0.37 1.78 16 25 C 0.09 0.99 7.27 -83.95 -0.61 0.37 16 26 C -0.10 -1.01 10.06 -39.45 -0.40 -1.41 16 27 C -0.13 -1.45 9.99 -39.48 -0.39 -1.85 16 28 C 0.07 0.93 7.29 -39.45 -0.29 0.65 16 29 F -0.14 -2.06 17.26 2.25 0.04 -2.02 16 30 C -0.10 -1.41 10.07 -39.21 -0.40 -1.81 16 31 C -0.06 -0.87 6.35 -105.14 -0.67 -1.54 16 32 H 0.04 0.85 7.01 -51.93 -0.36 0.48 16 33 H 0.06 1.45 7.32 -51.93 -0.38 1.07 16 34 H 0.06 1.54 7.55 -51.93 -0.39 1.15 16 35 H 0.39 9.51 7.85 -40.82 -0.32 9.19 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.07 0.67 7.47 -51.93 -0.39 0.28 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 0.84 7.84 -51.93 -0.41 0.43 16 43 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -33.57 383.36 -9.79 -43.37 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.39 Total: 10.28 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -4.25 Total: -5.33 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.04 Total: -58.36 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.57 -9.79 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987059648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.499 kcal (2) G-P(sol) polarization free energy of solvation -33.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds