Wall clock time and date at job start Wed Apr 1 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.99928 * 2 1 4 4 C 1.54330 * 109.99421 * 238.96005 * 2 1 3 5 5 H 1.09005 * 110.84653 * 100.19928 * 4 2 1 6 6 N 1.46505 * 110.66864 * 337.05076 * 4 2 1 7 7 C 1.36940 * 119.99712 * 97.24408 * 6 4 2 8 8 H 1.07997 * 120.00447 * 359.97438 * 7 6 4 9 9 C 1.38816 * 119.99495 * 180.02562 * 7 6 4 10 10 N 1.31617 * 120.00195 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99765 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47146 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46868 * 120.00095 * 11 9 7 14 14 H 1.48497 * 109.47378 * 239.99928 * 11 9 7 15 15 C 1.55158 * 103.02352 * 218.66693 * 4 2 1 16 16 C 1.54905 * 101.58092 * 35.30877 * 15 4 2 17 17 N 1.47030 * 109.88207 * 121.09706 * 2 1 3 18 18 C 1.34776 * 125.64573 * 298.39772 * 17 2 1 19 19 O 1.21281 * 120.00231 * 359.71343 * 18 17 2 20 20 C 1.50703 * 119.99846 * 179.97438 * 18 17 2 21 21 C 1.50705 * 109.47036 * 179.72300 * 20 18 17 22 22 C 1.34235 * 126.49319 * 265.02441 * 21 20 18 23 23 N 1.36807 * 109.93208 * 179.97438 * 22 21 20 24 24 H 0.96996 * 125.06842 * 180.02562 * 23 22 21 25 25 C 1.37807 * 109.86424 * 359.97438 * 23 22 21 26 26 C 1.39101 * 133.39878 * 180.02562 * 25 23 22 27 27 C 1.37713 * 119.95154 * 179.31283 * 26 25 23 28 28 C 1.39042 * 120.65030 * 0.56142 * 27 26 25 29 29 F 1.35095 * 119.83332 * 179.62055 * 28 27 26 30 30 C 1.37790 * 120.32886 * 359.63952 * 28 27 26 31 31 C 1.39665 * 119.63183 * 0.02562 * 30 28 27 32 32 H 1.08998 * 109.46998 * 304.35524 * 1 2 3 33 33 H 1.08997 * 109.46521 * 64.35376 * 1 2 3 34 34 H 1.08999 * 109.46963 * 184.35042 * 1 2 3 35 35 H 0.96996 * 119.99895 * 277.24877 * 6 4 2 36 36 H 0.96998 * 119.99967 * 180.02562 * 10 9 7 37 37 H 1.09002 * 111.00352 * 277.22996 * 15 4 2 38 38 H 1.09007 * 111.03465 * 153.39909 * 15 4 2 39 39 H 1.08995 * 110.36592 * 204.15381 * 16 15 4 40 40 H 1.08998 * 110.36981 * 81.82677 * 16 15 4 41 41 H 1.09003 * 109.46584 * 299.71648 * 20 18 17 42 42 H 1.08993 * 109.47307 * 59.72300 * 20 18 17 43 43 H 1.08007 * 125.03845 * 359.92114 * 22 21 20 44 44 H 1.07994 * 120.02174 * 359.95592 * 26 25 23 45 45 H 1.07999 * 119.67965 * 180.20798 * 27 26 25 46 46 H 1.08001 * 120.17884 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0577 -0.7478 -1.2426 5 1 2.3599 -0.0449 -2.0191 6 7 1.0484 -1.6789 -1.7532 7 6 0.2391 -1.3082 -2.7938 8 1 0.3446 -0.3294 -3.2379 9 6 -0.7176 -2.1902 -3.2772 10 7 -0.8473 -3.3825 -2.7350 11 14 -1.8221 -1.6844 -4.6963 12 1 -1.4788 -0.3041 -5.1230 13 1 -1.6251 -2.6182 -5.8340 14 1 -3.2407 -1.7286 -4.2596 15 6 3.2864 -1.5184 -0.6914 16 6 2.8100 -1.8826 0.7369 17 7 2.0301 -0.7141 1.1840 18 6 1.8073 -0.3621 2.4657 19 8 1.1475 0.6237 2.7180 20 6 2.3832 -1.1902 3.5855 21 6 1.9963 -0.5831 4.9095 22 6 2.7295 0.2709 5.6409 23 7 2.0536 0.6072 6.7818 24 1 2.3815 1.2109 7.4664 25 6 0.8367 -0.0389 6.8128 26 6 -0.2159 -0.0513 7.7220 27 6 -1.3384 -0.8062 7.4641 28 6 -1.4285 -1.5694 6.3053 29 9 -2.5342 -2.3099 6.0726 30 6 -0.3955 -1.5746 5.3935 31 6 0.7461 -0.8082 5.6390 32 1 -0.3633 0.5799 0.8484 33 1 -0.3632 0.4448 -0.9264 34 1 -0.3633 -1.0247 0.0780 35 1 0.9533 -2.5578 -1.3540 36 1 -1.5156 -3.9990 -3.0731 37 1 4.1671 -0.8769 -0.6578 38 1 3.4814 -2.4156 -1.2789 39 1 3.6655 -2.0412 1.3933 40 1 2.1801 -2.7718 0.7115 41 1 1.9930 -2.2061 3.5237 42 1 3.4695 -1.2122 3.4995 43 1 3.7084 0.6376 5.3694 44 1 -0.1572 0.5388 8.6246 45 1 -2.1545 -0.8100 8.1715 46 1 -0.4682 -2.1679 4.4941 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987059648.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:47 Heat of formation + Delta-G solvation = -23.526163 kcal Electronic energy + Delta-G solvation = -30076.916018 eV Core-core repulsion = 25880.900240 eV Total energy + Delta-G solvation = -4196.015778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.82418 -42.26389 -41.01508 -38.75451 -37.55928 -35.70106 -34.15946 -33.19988 -32.13334 -31.40367 -30.35658 -29.90186 -27.93462 -26.77377 -25.26320 -24.09855 -23.66350 -22.92301 -21.59073 -20.47559 -19.63727 -19.33574 -18.86659 -18.23754 -17.88525 -17.28240 -17.19339 -16.57764 -16.47574 -16.19599 -15.88500 -15.50464 -15.36585 -15.16275 -14.90607 -14.88079 -14.57234 -14.20558 -14.02012 -13.91188 -13.78145 -13.62576 -13.39218 -13.12093 -12.98628 -12.84958 -12.63173 -12.36299 -12.27038 -12.26869 -12.14459 -11.83063 -11.79042 -11.65246 -11.46944 -10.96314 -10.85393 -10.51948 -9.48723 -9.13389 -8.97898 -8.62684 -7.91367 -5.17686 -0.00204 0.39510 1.46601 1.48924 1.56718 1.58927 1.81899 2.20474 2.31801 2.57579 2.72194 3.31969 3.40847 3.64909 3.77262 3.80621 3.84238 3.93905 4.01842 4.10167 4.25716 4.29228 4.34731 4.44136 4.45635 4.58827 4.63692 4.67805 4.69951 4.77001 4.82798 4.86706 4.88178 5.04238 5.07911 5.16493 5.21618 5.29585 5.30551 5.36581 5.51069 5.57461 5.59782 5.65798 5.71648 6.08790 6.30528 6.72105 6.78875 7.36916 7.38672 8.12569 8.35551 9.31825 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002854 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.509631 B = 9807.865129 C =11223.433262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.116 3.884 3 H 0.063 0.937 4 C 0.161 3.839 5 H 0.077 0.923 6 N -0.717 5.717 7 C -0.224 4.224 8 H 0.075 0.925 9 C -0.072 4.072 10 N -0.966 5.966 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.294 1.294 14 H -0.303 1.303 15 C -0.131 4.131 16 C 0.102 3.898 17 N -0.609 5.609 18 C 0.518 3.482 19 O -0.582 6.582 20 C -0.052 4.052 21 C -0.187 4.187 22 C 0.093 3.907 23 N -0.576 5.576 24 H 0.436 0.564 25 C 0.075 3.925 26 C -0.087 4.087 27 C -0.140 4.140 28 C 0.047 3.953 29 F -0.156 7.156 30 C -0.131 4.131 31 C -0.092 4.092 32 H 0.027 0.973 33 H 0.049 0.951 34 H 0.032 0.968 35 H 0.374 0.626 36 H 0.248 0.752 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.212 0.788 44 H 0.169 0.831 45 H 0.161 0.839 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.935 6.621 23.002 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.009 3.991 3 H 0.081 0.919 4 C 0.050 3.950 5 H 0.095 0.905 6 N -0.355 5.355 7 C -0.356 4.356 8 H 0.093 0.907 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.221 1.221 14 H -0.231 1.231 15 C -0.169 4.169 16 C -0.020 4.020 17 N -0.343 5.343 18 C 0.308 3.692 19 O -0.462 6.462 20 C -0.091 4.091 21 C -0.195 4.195 22 C -0.034 4.034 23 N -0.181 5.181 24 H 0.277 0.723 25 C -0.033 4.033 26 C -0.107 4.107 27 C -0.160 4.160 28 C 0.027 3.973 29 F -0.135 7.135 30 C -0.151 4.151 31 C -0.097 4.097 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.207 0.793 36 H 0.057 0.943 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.071 0.929 41 H 0.117 0.883 42 H 0.157 0.843 43 H 0.229 0.771 44 H 0.186 0.814 45 H 0.178 0.822 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.548 7.338 23.132 27.793 hybrid contribution -1.758 -0.365 -0.955 2.033 sum 11.790 6.973 22.177 26.066 Atomic orbital electron populations 1.21545 0.96654 1.00024 0.99192 1.22382 0.93601 0.96054 0.87042 0.91868 1.21496 0.89129 0.92127 0.92242 0.90542 1.42444 1.39386 1.15474 1.38202 1.19555 1.10148 0.98615 1.07266 0.90665 1.25383 1.01783 0.96683 1.02584 1.69793 1.38263 1.08120 1.45542 0.85265 0.78408 0.77746 0.79549 1.19069 1.22134 1.23075 1.23083 0.97441 1.01609 0.94798 1.22446 0.95513 0.87396 0.96635 1.48736 1.52303 1.28569 1.04659 1.21079 0.79958 0.85332 0.82837 1.90652 1.41759 1.29967 1.83808 1.19943 1.03834 0.98351 0.87015 1.19776 0.94678 1.07049 0.97952 1.22159 0.99133 0.96105 0.86053 1.41663 1.13787 1.41395 1.21205 0.72297 1.18429 0.89655 0.98166 0.97070 1.20198 0.90259 1.00716 0.99557 1.21011 1.00313 0.98197 0.96467 1.17658 0.84245 0.97559 0.97807 1.91440 1.51597 1.75535 1.94971 1.20460 0.93378 1.01876 0.99370 1.19037 0.94929 0.99521 0.96193 0.95407 0.93228 0.94885 0.79313 0.94348 0.87738 0.89673 0.86638 0.92940 0.88339 0.84252 0.77129 0.81389 0.82160 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.08 71.98 0.58 -4.55 16 2 C 0.12 4.22 3.43 45.34 0.16 4.37 16 3 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.16 5.75 3.53 46.18 0.16 5.91 16 5 H 0.08 2.69 8.05 -2.38 -0.02 2.67 16 6 N -0.72 -33.43 3.81 -317.30 -1.21 -34.64 16 7 C -0.22 -11.82 8.62 84.03 0.72 -11.09 16 8 H 0.08 3.85 7.82 -2.91 -0.02 3.83 16 9 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 10 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 11 Si 0.96 46.22 29.55 68.60 2.03 48.25 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 14 H -0.30 -15.00 7.11 99.48 0.71 -14.30 16 15 C -0.13 -3.34 6.70 31.98 0.21 -3.13 16 16 C 0.10 2.49 6.63 86.85 0.58 3.07 16 17 N -0.61 -18.82 3.06 -788.04 -2.41 -21.23 16 18 C 0.52 16.28 7.63 87.66 0.67 16.94 16 19 O -0.58 -23.45 15.15 -3.03 -0.05 -23.50 16 20 C -0.05 -1.11 5.24 29.10 0.15 -0.96 16 21 C -0.19 -4.30 4.81 -18.63 -0.09 -4.39 16 22 C 0.09 1.44 11.73 83.00 0.97 2.41 16 23 N -0.58 -8.05 6.07 -187.58 -1.14 -9.19 16 24 H 0.44 2.56 8.96 -92.71 -0.83 1.73 16 25 C 0.07 1.55 7.27 39.00 0.28 1.84 16 26 C -0.09 -1.51 10.06 22.35 0.22 -1.29 16 27 C -0.14 -2.94 9.99 22.34 0.22 -2.72 16 28 C 0.05 1.35 7.29 22.36 0.16 1.51 16 29 F -0.16 -4.87 17.26 44.97 0.78 -4.09 16 30 C -0.13 -4.03 10.07 22.51 0.23 -3.80 16 31 C -0.09 -2.50 6.35 -20.20 -0.13 -2.63 16 32 H 0.03 1.25 7.01 -2.39 -0.02 1.23 16 33 H 0.05 2.29 7.32 -2.39 -0.02 2.27 16 34 H 0.03 1.64 7.55 -2.39 -0.02 1.62 16 35 H 0.37 19.01 7.85 -92.71 -0.73 18.28 16 36 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.12 1.75 7.47 -2.39 -0.02 1.73 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.14 1.74 7.84 -2.39 -0.02 1.72 16 43 H 0.21 1.43 8.06 -2.91 -0.02 1.41 16 44 H 0.17 1.50 8.06 -2.91 -0.02 1.47 16 45 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.11 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -78.80 383.36 3.33 -75.48 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: -0.53 Total: 28.96 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 5.58 Total: -2.09 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -4.48 Total: -123.01 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.05 Total: -23.50 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.78 Total: -4.09 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.80 3.33 -75.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987059648.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.951 kcal (2) G-P(sol) polarization free energy of solvation -78.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds