Wall clock time and date at job start Wed Apr 1 2020 05:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.99717 * 2 1 4 4 C 1.54334 * 109.77686 * 121.16420 * 2 1 3 5 5 H 1.09006 * 110.50971 * 215.80283 * 4 2 1 6 6 N 1.46490 * 111.00512 * 338.95466 * 4 2 1 7 7 C 1.36940 * 120.00124 * 200.23891 * 6 4 2 8 8 H 1.08003 * 119.99856 * 359.97438 * 7 6 4 9 9 C 1.38814 * 119.99994 * 180.02562 * 7 6 4 10 10 N 1.31620 * 119.99615 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00117 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47140 * 90.00048 * 11 9 7 13 13 H 1.48498 * 109.46834 * 210.00181 * 11 9 7 14 14 H 1.48497 * 109.47006 * 330.00068 * 11 9 7 15 15 C 1.55164 * 103.01946 * 97.49681 * 4 2 1 16 16 C 1.54906 * 101.58185 * 35.30369 * 15 4 2 17 17 N 1.47022 * 109.88033 * 238.90320 * 2 1 3 18 18 C 1.34778 * 125.64754 * 59.56005 * 17 2 1 19 19 O 1.21285 * 119.99981 * 359.71379 * 18 17 2 20 20 C 1.50701 * 120.00095 * 179.71936 * 18 17 2 21 21 C 1.50693 * 109.47084 * 179.97438 * 20 18 17 22 22 C 1.34238 * 126.49502 * 264.96784 * 21 20 18 23 23 N 1.36815 * 109.93412 * 180.02562 * 22 21 20 24 24 H 0.97003 * 125.07140 * 179.74478 * 23 22 21 25 25 C 1.37820 * 109.85808 * 0.02562 * 23 22 21 26 26 C 1.39096 * 133.39247 * 180.02562 * 25 23 22 27 27 C 1.37711 * 119.95277 * 179.97438 * 26 25 23 28 28 C 1.39032 * 120.64998 * 0.02562 * 27 26 25 29 29 F 1.35095 * 119.83375 * 179.97438 * 28 27 26 30 30 C 1.37794 * 120.33029 * 359.97293 * 28 27 26 31 31 C 1.39671 * 119.62967 * 0.02562 * 30 28 27 32 32 H 1.08993 * 109.47241 * 179.64750 * 1 2 3 33 33 H 1.09003 * 109.46583 * 299.64357 * 1 2 3 34 34 H 1.08998 * 109.47284 * 59.63821 * 1 2 3 35 35 H 0.96995 * 120.00292 * 20.23971 * 6 4 2 36 36 H 0.96999 * 119.99853 * 180.02562 * 10 9 7 37 37 H 1.08995 * 111.00076 * 277.22919 * 15 4 2 38 38 H 1.09002 * 111.03621 * 153.39070 * 15 4 2 39 39 H 1.08999 * 110.36424 * 204.15439 * 16 15 4 40 40 H 1.09004 * 110.46066 * 81.87365 * 16 15 4 41 41 H 1.09005 * 109.47076 * 59.99421 * 20 18 17 42 42 H 1.09000 * 109.46773 * 299.99883 * 20 18 17 43 43 H 1.07997 * 125.03662 * 0.02562 * 22 21 20 44 44 H 1.08005 * 120.02272 * 359.95034 * 26 25 23 45 45 H 1.08004 * 119.67449 * 179.97438 * 27 26 25 46 46 H 1.08002 * 120.18431 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0523 -0.7516 1.2427 5 1 2.9607 -0.2815 1.6196 6 7 1.0289 -0.8105 2.2892 7 6 1.3909 -1.0479 3.5884 8 1 2.4309 -1.1920 3.8414 9 6 0.4211 -1.1043 4.5799 10 7 0.7691 -1.3329 5.8285 11 14 -1.3778 -0.8557 4.1422 12 1 -1.9928 -2.1665 3.8127 13 1 -2.0893 -0.2514 5.2971 14 1 -1.4813 0.0486 2.9689 15 6 2.3561 -2.1698 0.6915 16 6 2.8612 -1.8466 -0.7368 17 7 2.0300 -0.7141 -1.1839 18 6 1.7753 -0.3845 -2.4657 19 8 1.0745 0.5727 -2.7180 20 6 2.3611 -1.2054 -3.5855 21 6 1.9269 -0.6314 -4.9095 22 6 0.8771 -1.0282 -5.6460 23 7 0.7959 -0.2757 -6.7857 24 1 0.1215 -0.3794 -7.4752 25 6 1.8188 0.6476 -6.8111 26 6 2.1931 1.6345 -7.7170 27 6 3.2930 2.4223 -7.4601 28 6 4.0385 2.2422 -6.3005 29 9 5.1149 3.0240 -6.0653 30 6 3.6850 1.2702 -5.3899 31 6 2.5717 0.4640 -5.6377 32 1 -0.3633 -1.0276 -0.0063 33 1 -0.3632 0.5083 0.8932 34 1 -0.3634 0.5194 -0.8867 35 1 0.0948 -0.6815 2.0620 36 1 0.0914 -1.3727 6.5214 37 1 1.4522 -2.7778 0.6579 38 1 3.1326 -2.6598 1.2789 39 1 2.7177 -2.7049 -1.3932 40 1 3.9125 -1.5595 -0.7134 41 1 2.0107 -2.2344 -3.5035 42 1 3.4489 -1.1858 -3.5197 43 1 0.1973 -1.8236 -5.3785 44 1 1.6216 1.7826 -8.6214 45 1 3.5798 3.1870 -8.1668 46 1 4.2656 1.1326 -4.4897 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987059649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:51 Heat of formation + Delta-G solvation = -17.166639 kcal Electronic energy + Delta-G solvation = -29706.855573 eV Core-core repulsion = 25511.115565 eV Total energy + Delta-G solvation = -4195.740008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.79102 -42.26221 -41.13759 -38.86278 -37.54678 -35.99145 -34.20478 -33.54657 -32.14235 -31.59437 -30.68154 -29.88619 -27.99855 -26.90232 -25.01565 -24.07560 -23.79034 -22.91176 -21.51029 -20.49164 -19.92250 -19.72361 -18.87994 -18.21898 -18.03444 -17.26259 -17.13279 -16.55866 -16.48363 -16.35664 -16.13451 -15.85400 -15.50374 -15.08961 -14.88184 -14.79757 -14.54277 -14.27202 -13.97727 -13.88322 -13.77059 -13.58236 -13.41364 -13.37672 -13.08957 -13.03027 -12.82513 -12.66017 -12.54140 -12.25608 -12.22742 -11.90287 -11.77208 -11.70812 -11.51483 -10.96345 -10.87511 -10.53093 -9.59311 -9.30646 -9.12360 -8.62411 -8.01931 -5.35134 0.01508 0.41551 1.36617 1.38228 1.45087 1.56665 1.77141 2.15672 2.23986 2.47222 2.73360 3.27872 3.33047 3.56994 3.59817 3.66837 3.82795 3.88234 3.98933 4.08809 4.13092 4.18714 4.31562 4.36979 4.39285 4.45191 4.52953 4.62495 4.66414 4.70073 4.76145 4.83845 4.85244 4.89773 5.05108 5.08763 5.16173 5.23331 5.27795 5.31672 5.36135 5.51399 5.66304 5.72742 5.78857 6.10124 6.22207 6.67794 6.71145 7.07414 7.30649 7.83114 8.01389 9.19234 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019810 B = 0.002322 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.076193 B =12057.423991 C =12459.456487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.133 3.867 3 H 0.059 0.941 4 C 0.168 3.832 5 H 0.062 0.938 6 N -0.746 5.746 7 C -0.224 4.224 8 H 0.065 0.935 9 C -0.060 4.060 10 N -0.981 5.981 11 Si 0.941 3.059 12 H -0.276 1.276 13 H -0.297 1.297 14 H -0.257 1.257 15 C -0.145 4.145 16 C 0.105 3.895 17 N -0.612 5.612 18 C 0.523 3.477 19 O -0.577 6.577 20 C -0.051 4.051 21 C -0.184 4.184 22 C 0.087 3.913 23 N -0.579 5.579 24 H 0.434 0.566 25 C 0.072 3.928 26 C -0.091 4.091 27 C -0.141 4.141 28 C 0.049 3.951 29 F -0.154 7.154 30 C -0.125 4.125 31 C -0.089 4.089 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.369 0.631 36 H 0.257 0.743 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.134 0.866 42 H 0.113 0.887 43 H 0.205 0.795 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -1.883 -33.221 33.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.028 3.972 3 H 0.078 0.922 4 C 0.058 3.942 5 H 0.080 0.920 6 N -0.392 5.392 7 C -0.355 4.355 8 H 0.083 0.917 9 C -0.251 4.251 10 N -0.631 5.631 11 Si 0.769 3.231 12 H -0.202 1.202 13 H -0.224 1.224 14 H -0.182 1.182 15 C -0.185 4.185 16 C -0.017 4.017 17 N -0.347 5.347 18 C 0.313 3.687 19 O -0.456 6.456 20 C -0.091 4.091 21 C -0.191 4.191 22 C -0.041 4.041 23 N -0.183 5.183 24 H 0.275 0.725 25 C -0.035 4.035 26 C -0.111 4.111 27 C -0.161 4.161 28 C 0.029 3.971 29 F -0.133 7.133 30 C -0.145 4.145 31 C -0.095 4.095 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.206 0.794 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.152 0.848 42 H 0.131 0.869 43 H 0.222 0.778 44 H 0.181 0.819 45 H 0.176 0.824 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.382 -1.393 -33.344 33.458 hybrid contribution -1.071 0.596 0.719 1.421 sum 1.312 -0.797 -32.625 32.661 Atomic orbital electron populations 1.21948 0.95732 1.01953 1.01497 1.21493 0.94437 0.95609 0.85627 0.92244 1.21342 0.91545 0.94929 0.86357 0.92006 1.42952 1.05323 1.87105 1.03812 1.19030 0.93981 1.38694 0.83834 0.91740 1.25379 1.01801 1.02858 0.95106 1.69857 1.33940 1.58491 1.00834 0.85636 0.81540 0.78501 0.77443 1.20173 1.22383 1.18160 1.23321 1.01838 0.97969 0.95378 1.22533 0.94969 0.88968 0.95256 1.48683 1.50593 1.31045 1.04331 1.21100 0.80203 0.84937 0.82449 1.90674 1.40390 1.30853 1.83688 1.19956 1.02753 0.99813 0.86557 1.19754 1.00417 1.01025 0.97919 1.22150 0.98058 0.97627 0.86275 1.41710 1.26147 1.29387 1.21073 0.72524 1.18468 0.92092 0.95575 0.97402 1.20174 0.97509 0.93874 0.99557 1.21005 0.96086 1.02230 0.96742 1.17598 0.87871 0.93992 0.97633 1.91444 1.53537 1.73455 1.94877 1.20477 0.98226 0.96152 0.99618 1.19005 0.96221 0.98332 0.95897 0.92241 0.92722 0.92067 0.79441 0.93396 0.91469 0.89933 0.87134 0.89481 0.84817 0.86874 0.77793 0.81917 0.82397 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 7.94 71.98 0.57 -4.64 16 2 C 0.13 4.34 3.49 45.35 0.16 4.50 16 3 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 4 C 0.17 5.98 3.44 46.19 0.16 6.14 16 5 H 0.06 2.30 8.12 -2.38 -0.02 2.28 16 6 N -0.75 -33.58 4.83 -317.31 -1.53 -35.11 16 7 C -0.22 -12.33 10.46 84.03 0.88 -11.45 16 8 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 9 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 10 N -0.98 -61.92 13.97 21.65 0.30 -61.62 16 11 Si 0.94 45.12 27.74 68.60 1.90 47.03 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 14 H -0.26 -11.33 6.52 99.48 0.65 -10.68 16 15 C -0.14 -4.04 6.77 31.99 0.22 -3.82 16 16 C 0.10 2.04 6.69 86.85 0.58 2.62 16 17 N -0.61 -15.78 3.08 -788.02 -2.43 -18.21 16 18 C 0.52 13.57 7.63 87.66 0.67 14.24 16 19 O -0.58 -20.10 14.92 -3.04 -0.05 -20.15 16 20 C -0.05 -0.84 5.24 29.10 0.15 -0.69 16 21 C -0.18 -3.49 4.81 -18.63 -0.09 -3.58 16 22 C 0.09 1.17 11.73 83.00 0.97 2.15 16 23 N -0.58 -7.04 6.08 -187.59 -1.14 -8.18 16 24 H 0.43 2.10 8.96 -92.71 -0.83 1.27 16 25 C 0.07 1.29 7.27 38.99 0.28 1.57 16 26 C -0.09 -1.32 10.06 22.35 0.22 -1.10 16 27 C -0.14 -2.42 9.99 22.34 0.22 -2.20 16 28 C 0.05 1.13 7.29 22.35 0.16 1.29 16 29 F -0.15 -3.83 17.26 44.97 0.78 -3.05 16 30 C -0.13 -3.01 10.07 22.51 0.23 -2.79 16 31 C -0.09 -2.01 6.35 -20.20 -0.13 -2.14 16 32 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 33 H 0.05 2.01 6.74 -2.39 -0.02 2.00 16 34 H 0.06 2.13 6.74 -2.39 -0.02 2.11 16 35 H 0.37 16.30 2.83 -92.71 -0.26 16.03 16 36 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.11 1.37 7.48 -2.39 -0.02 1.35 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.13 1.27 7.85 -2.38 -0.02 1.25 16 42 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 44 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -79.00 379.42 3.45 -75.55 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.12 Total: 26.64 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 5.73 Total: -2.90 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -4.80 Total: -123.12 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -0.05 Total: -20.15 kcal Atomic # 9 Polarization: -3.83 SS G_CDS: 0.78 Total: -3.05 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.90 Total: 47.03 kcal Total: -79.00 3.45 -75.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987059649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.387 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds