Wall clock time and date at job start Wed Apr 1 2020 05:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.99795 * 2 1 4 4 C 1.54330 * 109.99293 * 238.96753 * 2 1 3 5 5 H 1.09004 * 110.66676 * 337.04274 * 4 2 1 6 6 N 1.46495 * 110.85475 * 100.19482 * 4 2 1 7 7 C 1.36935 * 119.99953 * 200.14384 * 6 4 2 8 8 H 1.07994 * 120.00278 * 0.02562 * 7 6 4 9 9 C 1.38821 * 119.99921 * 180.02562 * 7 6 4 10 10 N 1.31623 * 119.99626 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00098 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47319 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47291 * 119.99712 * 11 9 7 14 14 H 1.48495 * 109.47218 * 239.99831 * 11 9 7 15 15 C 1.55161 * 103.02029 * 218.66476 * 4 2 1 16 16 C 1.54915 * 101.58190 * 35.30158 * 15 4 2 17 17 N 1.47018 * 109.88213 * 121.09568 * 2 1 3 18 18 C 1.34773 * 125.64754 * 298.39617 * 17 2 1 19 19 O 1.21489 * 120.00312 * 359.71638 * 18 17 2 20 20 C 1.48341 * 120.00054 * 179.71885 * 18 17 2 21 21 C 1.42269 * 126.93691 * 180.25202 * 20 18 17 22 22 C 1.35321 * 103.91842 * 180.12548 * 21 20 18 23 23 C 1.50697 * 126.66560 * 179.90510 * 22 21 20 24 24 N 1.46506 * 109.46726 * 89.71209 * 23 22 21 25 25 C 1.34949 * 126.03292 * 124.99938 * 24 23 22 26 26 C 1.35318 * 107.74247 * 179.97438 * 25 24 23 27 27 C 1.39875 * 107.92186 * 0.02562 * 26 25 24 28 28 N 1.30839 * 108.20184 * 359.97438 * 27 26 25 29 29 O 1.34016 * 106.66529 * 359.64740 * 22 21 20 30 30 N 1.20897 * 111.85052 * 0.23695 * 29 22 21 31 31 H 1.08998 * 109.47105 * 300.35723 * 1 2 3 32 32 H 1.09001 * 109.47155 * 60.35663 * 1 2 3 33 33 H 1.08999 * 109.46919 * 180.35717 * 1 2 3 34 34 H 0.97006 * 119.99915 * 20.14809 * 6 4 2 35 35 H 0.97004 * 119.99742 * 180.02562 * 10 9 7 36 36 H 1.08994 * 111.00233 * 277.23437 * 15 4 2 37 37 H 1.08997 * 111.04173 * 153.39075 * 15 4 2 38 38 H 1.08991 * 110.36761 * 204.15167 * 16 15 4 39 39 H 1.09011 * 110.36196 * 81.83034 * 16 15 4 40 40 H 1.07998 * 128.04370 * 0.03037 * 21 20 18 41 41 H 1.08998 * 109.47368 * 329.71426 * 23 22 21 42 42 H 1.09005 * 109.47215 * 209.71036 * 23 22 21 43 43 H 1.07998 * 126.13002 * 359.96987 * 25 24 23 44 44 H 1.08001 * 126.04223 * 179.97438 * 26 25 24 45 45 H 1.08003 * 125.89835 * 179.73925 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0577 -0.7477 -1.2427 5 1 1.3067 -1.4404 -1.6226 6 7 2.4637 0.1969 -2.2863 7 6 2.5656 -0.2212 -3.5862 8 1 2.3462 -1.2472 -3.8423 9 6 2.9508 0.6738 -4.5751 10 7 3.2187 1.9241 -4.2629 11 14 3.0890 0.1036 -6.3485 12 1 2.7362 -1.3363 -6.4345 13 1 2.1587 0.8921 -7.1959 14 1 4.4814 0.3020 -6.8251 15 6 3.2865 -1.5182 -0.6915 16 6 2.8101 -1.8824 0.7369 17 7 2.0300 -0.7140 1.1839 18 6 1.8074 -0.3620 2.4656 19 8 1.1463 0.6255 2.7184 20 6 2.3695 -1.1803 3.5679 21 6 2.2236 -0.9496 4.9642 22 6 2.9165 -1.9618 5.5355 23 6 3.0979 -2.2077 7.0112 24 7 2.0101 -3.0578 7.5018 25 6 2.1518 -4.2259 8.1625 26 6 0.9135 -4.6957 8.4396 27 6 -0.0168 -3.7838 7.9302 28 7 0.6395 -2.8014 7.3680 29 8 3.4054 -2.7062 4.5341 30 7 3.0961 -2.2640 3.4522 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3633 -1.0276 0.0064 34 1 2.6605 1.1186 -2.0564 35 1 3.4875 2.5496 -4.9539 36 1 4.1670 -0.8767 -0.6579 37 1 3.4815 -2.4154 -1.2789 38 1 3.6656 -2.0411 1.3932 39 1 2.1802 -2.7718 0.7114 40 1 1.6861 -0.1512 5.4542 41 1 3.0833 -1.2562 7.5426 42 1 4.0528 -2.7048 7.1821 43 1 3.0861 -4.7006 8.4234 44 1 0.6839 -5.6132 8.9611 45 1 -1.0914 -3.8767 7.9875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987328305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:43 Heat of formation + Delta-G solvation = 117.671747 kcal Electronic energy + Delta-G solvation = -29457.193369 eV Core-core repulsion = 25287.220354 eV Total energy + Delta-G solvation = -4169.973015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.33208 -41.95060 -41.40026 -39.00757 -36.06673 -35.78306 -35.13143 -33.40570 -32.47924 -32.24678 -30.90962 -30.81237 -27.78097 -26.95301 -26.33877 -24.85862 -24.16998 -23.22656 -22.12655 -21.89534 -21.59270 -20.18456 -19.19109 -19.14440 -18.67650 -18.24642 -17.71974 -17.45469 -16.68228 -16.43965 -16.31478 -15.66743 -15.52486 -15.33486 -15.00369 -14.89168 -14.66519 -14.53682 -14.25417 -14.23762 -13.78142 -13.69902 -13.48251 -13.34824 -13.15200 -12.98227 -12.78488 -12.69829 -12.47016 -12.23670 -12.09183 -11.77359 -11.72606 -11.63042 -11.55162 -11.43206 -10.96701 -10.82799 -10.41660 -9.93132 -9.51097 -9.07777 -7.96727 -5.27440 -0.14262 0.35102 0.99453 1.46023 1.48695 1.50038 1.58888 1.74296 1.84462 1.90766 2.01656 2.54284 2.65116 3.17060 3.35217 3.55330 3.61756 3.67750 3.75939 3.85302 3.94760 4.08597 4.10130 4.18836 4.20913 4.29912 4.36328 4.39242 4.41082 4.55784 4.64756 4.72171 4.76178 4.82117 4.92529 4.96734 5.10491 5.11758 5.17678 5.20991 5.33514 5.51789 5.74973 6.15521 6.19431 6.23755 6.64868 6.79288 6.89604 7.29866 7.99498 8.24583 9.26798 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027748 B = 0.002001 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.822400 B =13988.441327 C =14212.219597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.133 3.867 3 H 0.056 0.944 4 C 0.174 3.826 5 H 0.073 0.927 6 N -0.727 5.727 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.076 4.076 10 N -0.970 5.970 11 Si 0.975 3.025 12 H -0.262 1.262 13 H -0.296 1.296 14 H -0.295 1.295 15 C -0.145 4.145 16 C 0.108 3.892 17 N -0.595 5.595 18 C 0.603 3.397 19 O -0.557 6.557 20 C -0.045 4.045 21 C -0.149 4.149 22 C -0.044 4.044 23 C 0.220 3.780 24 N -0.386 5.386 25 C 0.067 3.933 26 C -0.288 4.288 27 C 0.034 3.966 28 N -0.340 5.340 29 O 0.144 5.856 30 N -0.328 5.328 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.372 0.628 35 H 0.251 0.749 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.186 0.814 41 H 0.143 0.857 42 H 0.171 0.829 43 H 0.219 0.781 44 H 0.166 0.834 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -16.119 30.133 34.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.029 3.971 3 H 0.074 0.926 4 C 0.064 3.936 5 H 0.091 0.909 6 N -0.366 5.366 7 C -0.368 4.368 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.621 5.621 11 Si 0.804 3.196 12 H -0.186 1.186 13 H -0.224 1.224 14 H -0.223 1.223 15 C -0.186 4.186 16 C -0.014 4.014 17 N -0.328 5.328 18 C 0.390 3.610 19 O -0.435 6.435 20 C -0.202 4.202 21 C -0.173 4.173 22 C -0.108 4.108 23 C 0.099 3.901 24 N -0.170 5.170 25 C -0.077 4.077 26 C -0.317 4.317 27 C -0.152 4.152 28 N -0.161 5.161 29 O 0.062 5.938 30 N -0.024 5.024 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.204 0.796 41 H 0.160 0.840 42 H 0.188 0.812 43 H 0.236 0.764 44 H 0.184 0.816 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.013 -15.138 28.355 32.159 hybrid contribution -0.355 0.505 -0.406 0.738 sum 0.658 -14.633 27.950 31.555 Atomic orbital electron populations 1.21954 0.93580 1.02524 1.02259 1.21765 0.95309 0.95686 0.84328 0.92614 1.21393 0.94728 0.91086 0.86403 0.90902 1.42490 1.81077 1.09413 1.03653 1.19642 1.36946 0.95547 0.84681 0.89835 1.25606 1.03035 0.95891 1.02284 1.69844 1.54477 1.04365 1.33364 0.85047 0.76567 0.77983 0.79982 1.18597 1.22361 1.22268 1.23408 0.99305 1.01551 0.94303 1.22569 0.95666 0.87320 0.95821 1.48446 1.51329 1.28812 1.04174 1.16829 0.80003 0.83449 0.80714 1.90759 1.41488 1.27764 1.83447 1.23278 1.04132 0.96874 0.95872 1.22591 1.01941 1.02526 0.90215 1.24776 0.99680 0.92345 0.94016 1.20463 0.89519 0.99134 0.81011 1.48843 1.04680 1.18685 1.44835 1.23338 1.02030 0.86876 0.95502 1.21922 0.91635 1.04936 1.13181 1.24379 1.01699 0.92495 0.96657 1.77422 0.87896 1.25500 1.25258 1.84765 1.55428 1.43706 1.09897 1.74261 1.13333 1.10761 1.04077 0.92620 0.91348 0.91472 0.79575 0.94057 0.92342 0.88897 0.89013 0.89873 0.79640 0.83958 0.81177 0.76446 0.81617 0.78951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.11 71.98 0.66 -4.42 16 2 C 0.13 5.01 3.21 45.35 0.15 5.16 16 3 H 0.06 2.39 7.69 -2.39 -0.02 2.37 16 4 C 0.17 6.84 3.12 46.18 0.14 6.98 16 5 H 0.07 2.79 7.83 -2.38 -0.02 2.77 16 6 N -0.73 -36.27 5.25 -317.32 -1.67 -37.93 16 7 C -0.24 -12.76 9.98 84.04 0.84 -11.92 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 10 N -0.97 -59.40 13.06 21.66 0.28 -59.11 16 11 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 15 C -0.14 -4.93 6.77 31.99 0.22 -4.71 16 16 C 0.11 3.20 6.17 86.86 0.54 3.74 16 17 N -0.60 -20.39 3.06 -790.86 -2.42 -22.81 16 18 C 0.60 21.13 7.67 86.93 0.67 21.79 16 19 O -0.56 -22.49 16.00 -3.68 -0.06 -22.55 16 20 C -0.04 -1.27 7.02 42.96 0.30 -0.97 16 21 C -0.15 -3.27 10.92 22.60 0.25 -3.03 16 22 C -0.04 -0.67 6.91 25.01 0.17 -0.50 16 23 C 0.22 1.30 7.07 85.63 0.61 1.91 16 24 N -0.39 -4.58 3.67 -351.78 -1.29 -5.87 16 25 C 0.07 0.50 11.45 83.54 0.96 1.46 16 26 C -0.29 -3.01 10.80 21.99 0.24 -2.78 16 27 C 0.03 0.51 12.03 85.24 1.03 1.54 16 28 N -0.34 -6.53 12.41 -57.02 -0.71 -7.24 16 29 O 0.14 2.73 11.18 71.89 0.80 3.53 16 30 N -0.33 -8.23 9.30 -49.52 -0.46 -8.70 16 31 H 0.05 2.02 6.89 -2.39 -0.02 2.00 16 32 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 34 H 0.37 20.43 7.51 -92.70 -0.70 19.73 16 35 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.09 2.57 6.24 -2.39 -0.01 2.55 16 39 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.19 3.84 8.06 -2.91 -0.02 3.81 16 41 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.17 -0.56 8.07 -2.38 -0.02 -0.58 16 43 H 0.22 -0.43 8.06 -2.91 -0.02 -0.45 16 44 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 45 H 0.19 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -78.07 383.97 4.05 -74.01 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.33 Total: 28.59 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 7.22 Total: 10.41 kcal Atomic # 7 Polarization: -135.39 SS G_CDS: -6.27 Total: -141.66 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.74 Total: -19.02 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.07 4.05 -74.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987328305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.686 kcal (2) G-P(sol) polarization free energy of solvation -78.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds