Wall clock time and date at job start Wed Apr 1 2020 05:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87367 * 2 1 4 4 C 1.54370 * 110.03086 * 121.06585 * 2 1 3 5 5 H 1.08998 * 110.75791 * 260.02411 * 4 2 1 6 6 N 1.46508 * 110.70280 * 23.30374 * 4 2 1 7 7 C 1.36930 * 120.00370 * 235.82671 * 6 4 2 8 8 H 1.08008 * 119.99774 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00509 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99675 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00513 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47180 * 59.99431 * 11 9 7 13 13 H 1.48496 * 109.47304 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46839 * 299.99557 * 11 9 7 15 15 C 1.55151 * 102.92421 * 141.64793 * 4 2 1 16 16 C 1.54912 * 101.61716 * 324.55264 * 15 4 2 17 17 N 1.47023 * 109.88490 * 238.98417 * 2 1 3 18 18 C 1.34779 * 125.64431 * 61.52401 * 17 2 1 19 19 O 1.21537 * 119.99621 * 172.73305 * 18 17 2 20 20 C 1.47989 * 120.00106 * 352.73252 * 18 17 2 21 21 C 1.39648 * 119.95561 * 17.20033 * 20 18 17 22 22 C 1.37665 * 120.04465 * 179.72558 * 21 20 18 23 23 C 1.40036 * 119.95180 * 0.52435 * 22 21 20 24 24 N 1.36257 * 120.04328 * 179.76760 * 23 22 21 25 25 N 1.28998 * 120.00334 * 359.97438 * 24 23 22 26 26 C 1.34774 * 120.00293 * 179.97438 * 25 24 23 27 27 N 1.34773 * 120.00379 * 179.97438 * 26 25 24 28 28 O 1.21559 * 119.99800 * 0.02562 * 26 25 24 29 29 C 1.40041 * 119.91348 * 359.74975 * 23 22 21 30 30 C 1.37660 * 119.94697 * 359.97438 * 29 23 22 31 31 H 1.08996 * 109.47385 * 203.84911 * 1 2 3 32 32 H 1.09001 * 109.47059 * 323.85474 * 1 2 3 33 33 H 1.09003 * 109.47002 * 83.85362 * 1 2 3 34 34 H 0.97004 * 119.99838 * 55.82785 * 6 4 2 35 35 H 0.97006 * 119.99788 * 180.02562 * 10 9 7 36 36 H 1.08997 * 111.00478 * 206.45700 * 15 4 2 37 37 H 1.09001 * 110.99957 * 82.63901 * 15 4 2 38 38 H 1.08997 * 110.36904 * 155.82926 * 16 15 4 39 39 H 1.09000 * 110.36269 * 278.03912 * 16 15 4 40 40 H 1.07992 * 119.97903 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.02362 * 180.25138 * 22 21 20 42 42 H 0.97003 * 119.99649 * 0.02562 * 27 26 25 43 43 H 0.96998 * 120.00204 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.02353 * 179.97438 * 29 23 22 45 45 H 1.08001 * 119.97413 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0587 -0.7484 1.2423 5 1 2.3569 -0.0446 2.0194 6 7 1.0536 -1.6864 1.7486 7 6 0.6358 -1.6056 3.0501 8 1 1.0476 -0.8506 3.7036 9 6 -0.3161 -2.4946 3.5300 10 7 -0.8175 -3.4150 2.7338 11 14 -0.8866 -2.3839 5.3053 12 1 -1.4876 -1.0483 5.5498 13 1 -1.9000 -3.4375 5.5662 14 1 0.2741 -2.5777 6.2112 15 6 3.2917 -1.5108 0.6894 16 6 2.8177 -1.8762 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8061 -0.3594 -2.4662 19 8 2.3766 -0.9440 -3.3661 20 6 0.8656 0.7400 -2.7773 21 6 0.4891 1.6394 -1.7776 22 6 -0.3813 2.6662 -2.0663 23 6 -0.8978 2.8018 -3.3609 24 7 -1.7631 3.8145 -3.6475 25 7 -2.1075 4.6489 -2.7260 26 6 -2.9630 5.6509 -3.0097 27 7 -3.3233 6.5224 -2.0468 28 8 -3.4104 5.7681 -4.1338 29 6 -0.5234 1.8954 -4.3606 30 6 0.3516 0.8734 -4.0690 31 1 -0.3634 -0.9399 0.4155 32 1 -0.3633 0.8299 0.6062 33 1 -0.3633 0.1100 -1.0218 34 1 0.6841 -2.3647 1.1619 35 1 -1.4830 -4.0360 3.0691 36 1 3.4920 -2.4074 1.2760 37 1 4.1685 -0.8639 0.6566 38 1 3.6742 -2.0285 -1.3960 39 1 2.1953 -2.7708 -0.7153 40 1 0.8847 1.5324 -0.7785 41 1 -0.6691 3.3640 -1.2939 42 1 -2.9665 6.4286 -1.1497 43 1 -3.9393 7.2433 -2.2509 44 1 -0.9209 1.9980 -5.3595 45 1 0.6410 0.1744 -4.8398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987596435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:31 Heat of formation + Delta-G solvation = 89.118625 kcal Electronic energy + Delta-G solvation = -29922.796548 eV Core-core repulsion = 25751.585377 eV Total energy + Delta-G solvation = -4171.211171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.06252 -40.33993 -39.06245 -37.74966 -36.61224 -34.20219 -34.09592 -32.98001 -31.59531 -31.43625 -30.31264 -29.04441 -27.59015 -25.50466 -23.92676 -23.71892 -22.76799 -22.21460 -20.43933 -20.08317 -19.43151 -18.53775 -17.81239 -17.34275 -17.09837 -16.48128 -16.17843 -15.86441 -15.59882 -15.15052 -14.90754 -14.85860 -14.37854 -14.11405 -14.01492 -13.76280 -13.61154 -13.27589 -13.19598 -12.93439 -12.54203 -12.42320 -11.93043 -11.69215 -11.48928 -11.35674 -11.13744 -11.02088 -10.89725 -10.76162 -10.66610 -10.47258 -10.26548 -10.13362 -9.93159 -9.76927 -9.37040 -9.23495 -9.09226 -8.88831 -8.45914 -7.19274 -5.95215 -3.26368 -0.85255 1.08205 1.22335 2.39650 2.68558 3.00162 3.18647 3.32646 3.37965 3.39611 3.65495 3.99997 4.34283 4.41354 4.48815 4.59630 4.88966 4.93074 5.01030 5.04643 5.20047 5.27308 5.41291 5.47072 5.54896 5.58665 5.68479 5.70572 5.84143 5.94030 5.95806 5.99326 6.00486 6.12115 6.22457 6.28565 6.30637 6.41469 6.45612 6.54782 6.60117 6.85715 7.03313 7.11487 7.52565 7.63127 8.14827 8.15293 8.21146 9.33484 9.84936 10.19827 11.26003 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.003034 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.325304 B = 9227.073574 C =11501.552395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.092 3.908 3 H 0.077 0.923 4 C 0.173 3.827 5 H 0.085 0.915 6 N -0.704 5.704 7 C -0.253 4.253 8 H 0.073 0.927 9 C -0.005 4.005 10 N -0.927 5.927 11 Si 0.908 3.092 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.285 1.285 15 C -0.156 4.156 16 C 0.110 3.890 17 N -0.595 5.595 18 C 0.565 3.435 19 O -0.541 6.541 20 C -0.072 4.072 21 C -0.116 4.116 22 C -0.079 4.079 23 C 0.020 3.980 24 N -0.065 5.065 25 N -0.322 5.322 26 C 0.652 3.348 27 N -0.821 5.821 28 O -0.555 6.555 29 C -0.036 4.036 30 C -0.080 4.080 31 H 0.100 0.900 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.388 0.612 35 H 0.258 0.742 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.176 0.824 41 H 0.149 0.851 42 H 0.410 0.590 43 H 0.418 0.582 44 H 0.148 0.852 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.572 14.117 -7.817 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 H 0.095 0.905 4 C 0.059 3.941 5 H 0.103 0.897 6 N -0.343 5.343 7 C -0.383 4.383 8 H 0.091 0.909 9 C -0.202 4.202 10 N -0.574 5.574 11 Si 0.739 3.261 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.197 4.197 16 C -0.012 4.012 17 N -0.327 5.327 18 C 0.354 3.646 19 O -0.420 6.420 20 C -0.078 4.078 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.088 4.088 24 N 0.041 4.959 25 N -0.225 5.225 26 C 0.348 3.652 27 N -0.390 5.390 28 O -0.426 6.426 29 C -0.060 4.060 30 C -0.099 4.099 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.223 0.777 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.192 0.808 41 H 0.166 0.834 42 H 0.240 0.760 43 H 0.251 0.749 44 H 0.165 0.835 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.350 14.039 -8.960 16.819 hybrid contribution -0.716 0.119 1.290 1.480 sum 1.634 14.158 -7.670 16.185 Atomic orbital electron populations 1.22755 0.93675 1.06205 1.00917 1.22913 0.95867 0.95617 0.86981 0.90532 1.21224 0.88751 0.92100 0.92029 0.89668 1.42435 1.45115 1.35950 1.10777 1.19213 1.18449 1.13323 0.87337 0.90885 1.24762 0.99415 0.97964 0.98096 1.69645 1.32190 1.20538 1.35039 0.86270 0.78202 0.77142 0.84528 1.21144 1.21693 1.21161 1.23460 0.98977 1.02309 0.94911 1.22248 0.95063 0.88198 0.95695 1.48487 1.51054 1.28582 1.04621 1.17859 0.81857 0.83181 0.81704 1.90766 1.50407 1.55506 1.45306 1.20419 0.97014 0.95702 0.94632 1.22885 0.96344 0.92469 1.01719 1.22118 0.94665 0.97092 0.96423 1.19298 0.99146 0.95601 0.94726 1.72567 0.99281 0.95332 1.28712 1.72242 1.14251 1.04253 1.31711 1.17570 0.80977 0.82427 0.84213 1.42726 1.50998 1.31821 1.13415 1.90973 1.55665 1.74399 1.21548 1.21158 0.94465 0.91417 0.98964 1.21219 0.95271 0.97529 0.95909 0.88157 0.91761 0.92724 0.77720 0.93179 0.89268 0.91451 0.90939 0.90989 0.80764 0.83380 0.76034 0.74925 0.83457 0.83283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 7.52 37.16 0.28 -2.41 16 2 C 0.09 1.27 2.72 -66.93 -0.18 1.09 16 3 H 0.08 0.88 6.25 -51.93 -0.32 0.56 16 4 C 0.17 2.75 3.59 -66.07 -0.24 2.51 16 5 H 0.09 1.31 7.85 -51.93 -0.41 0.90 16 6 N -0.70 -14.70 3.35 -51.63 -0.17 -14.87 16 7 C -0.25 -6.06 9.94 -15.06 -0.15 -6.21 16 8 H 0.07 1.68 7.68 -52.48 -0.40 1.28 16 9 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 10 N -0.93 -25.59 13.06 55.49 0.72 -24.87 16 11 Si 0.91 20.54 29.55 -169.99 -5.02 15.51 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 15 C -0.16 -2.20 6.77 -24.58 -0.17 -2.37 16 16 C 0.11 1.62 6.92 -2.53 -0.02 1.61 16 17 N -0.60 -8.75 3.07 -164.04 -0.50 -9.25 16 18 C 0.57 8.63 7.58 -12.26 -0.09 8.54 16 19 O -0.54 -9.65 16.69 5.33 0.09 -9.56 16 20 C -0.07 -0.92 5.01 -104.84 -0.52 -1.44 16 21 C -0.12 -1.31 6.26 -39.26 -0.25 -1.56 16 22 C -0.08 -0.86 9.47 -39.12 -0.37 -1.23 16 23 C 0.02 0.23 6.68 -84.55 -0.56 -0.34 16 24 N -0.07 -0.85 10.78 32.21 0.35 -0.50 16 25 N -0.32 -3.92 10.04 27.63 0.28 -3.64 16 26 C 0.65 7.97 8.92 -86.92 -0.78 7.19 16 27 N -0.82 -5.71 8.88 27.63 0.25 -5.47 16 28 O -0.56 -8.95 17.48 5.31 0.09 -8.86 16 29 C -0.04 -0.37 9.99 -39.12 -0.39 -0.76 16 30 C -0.08 -0.89 9.57 -39.26 -0.38 -1.27 16 31 H 0.10 1.94 5.78 -51.93 -0.30 1.64 16 32 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 33 H 0.05 0.78 4.50 -51.93 -0.23 0.55 16 34 H 0.39 8.95 7.27 -40.82 -0.30 8.65 16 35 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.18 1.90 2.50 -52.49 -0.13 1.77 16 41 H 0.15 1.41 7.37 -52.49 -0.39 1.02 16 42 H 0.41 1.80 8.93 -40.82 -0.36 1.43 16 43 H 0.42 2.09 8.93 -40.82 -0.36 1.72 16 44 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.15 1.55 7.74 -52.49 -0.41 1.14 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -32.29 372.21 -7.50 -39.78 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -5.27 Total: 13.00 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -3.91 Total: 3.12 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: 0.92 Total: -58.60 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.29 -7.50 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987596435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.903 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds