Wall clock time and date at job start Wed Apr 1 2020 05:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87367 * 2 1 4 4 C 1.54370 * 110.03086 * 121.06585 * 2 1 3 5 5 H 1.08998 * 110.75791 * 260.02411 * 4 2 1 6 6 N 1.46508 * 110.70280 * 23.30374 * 4 2 1 7 7 C 1.36930 * 120.00370 * 235.82671 * 6 4 2 8 8 H 1.08008 * 119.99774 * 359.97438 * 7 6 4 9 9 C 1.38806 * 120.00509 * 180.02562 * 7 6 4 10 10 N 1.31624 * 119.99675 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00513 * 180.02562 * 9 7 6 12 12 H 1.48491 * 109.47180 * 59.99431 * 11 9 7 13 13 H 1.48496 * 109.47304 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.46839 * 299.99557 * 11 9 7 15 15 C 1.55151 * 102.92421 * 141.64793 * 4 2 1 16 16 C 1.54912 * 101.61716 * 324.55264 * 15 4 2 17 17 N 1.47023 * 109.88490 * 238.98417 * 2 1 3 18 18 C 1.34779 * 125.64431 * 61.52401 * 17 2 1 19 19 O 1.21537 * 119.99621 * 172.73305 * 18 17 2 20 20 C 1.47989 * 120.00106 * 352.73252 * 18 17 2 21 21 C 1.39648 * 119.95561 * 17.20033 * 20 18 17 22 22 C 1.37665 * 120.04465 * 179.72558 * 21 20 18 23 23 C 1.40036 * 119.95180 * 0.52435 * 22 21 20 24 24 N 1.36257 * 120.04328 * 179.76760 * 23 22 21 25 25 N 1.28998 * 120.00334 * 359.97438 * 24 23 22 26 26 C 1.34774 * 120.00293 * 179.97438 * 25 24 23 27 27 N 1.34773 * 120.00379 * 179.97438 * 26 25 24 28 28 O 1.21559 * 119.99800 * 0.02562 * 26 25 24 29 29 C 1.40041 * 119.91348 * 359.74975 * 23 22 21 30 30 C 1.37660 * 119.94697 * 359.97438 * 29 23 22 31 31 H 1.08996 * 109.47385 * 203.84911 * 1 2 3 32 32 H 1.09001 * 109.47059 * 323.85474 * 1 2 3 33 33 H 1.09003 * 109.47002 * 83.85362 * 1 2 3 34 34 H 0.97004 * 119.99838 * 55.82785 * 6 4 2 35 35 H 0.97006 * 119.99788 * 180.02562 * 10 9 7 36 36 H 1.08997 * 111.00478 * 206.45700 * 15 4 2 37 37 H 1.09001 * 110.99957 * 82.63901 * 15 4 2 38 38 H 1.08997 * 110.36904 * 155.82926 * 16 15 4 39 39 H 1.09000 * 110.36269 * 278.03912 * 16 15 4 40 40 H 1.07992 * 119.97903 * 0.02562 * 21 20 18 41 41 H 1.07999 * 120.02362 * 180.25138 * 22 21 20 42 42 H 0.97003 * 119.99649 * 0.02562 * 27 26 25 43 43 H 0.96998 * 120.00204 * 180.02562 * 27 26 25 44 44 H 1.07998 * 120.02353 * 179.97438 * 29 23 22 45 45 H 1.08001 * 119.97413 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0587 -0.7484 1.2423 5 1 2.3569 -0.0446 2.0194 6 7 1.0536 -1.6864 1.7486 7 6 0.6358 -1.6056 3.0501 8 1 1.0476 -0.8506 3.7036 9 6 -0.3161 -2.4946 3.5300 10 7 -0.8175 -3.4150 2.7338 11 14 -0.8866 -2.3839 5.3053 12 1 -1.4876 -1.0483 5.5498 13 1 -1.9000 -3.4375 5.5662 14 1 0.2741 -2.5777 6.2112 15 6 3.2917 -1.5108 0.6894 16 6 2.8177 -1.8762 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8061 -0.3594 -2.4662 19 8 2.3766 -0.9440 -3.3661 20 6 0.8656 0.7400 -2.7773 21 6 0.4891 1.6394 -1.7776 22 6 -0.3813 2.6662 -2.0663 23 6 -0.8978 2.8018 -3.3609 24 7 -1.7631 3.8145 -3.6475 25 7 -2.1075 4.6489 -2.7260 26 6 -2.9630 5.6509 -3.0097 27 7 -3.3233 6.5224 -2.0468 28 8 -3.4104 5.7681 -4.1338 29 6 -0.5234 1.8954 -4.3606 30 6 0.3516 0.8734 -4.0690 31 1 -0.3634 -0.9399 0.4155 32 1 -0.3633 0.8299 0.6062 33 1 -0.3633 0.1100 -1.0218 34 1 0.6841 -2.3647 1.1619 35 1 -1.4830 -4.0360 3.0691 36 1 3.4920 -2.4074 1.2760 37 1 4.1685 -0.8639 0.6566 38 1 3.6742 -2.0285 -1.3960 39 1 2.1953 -2.7708 -0.7153 40 1 0.8847 1.5324 -0.7785 41 1 -0.6691 3.3640 -1.2939 42 1 -2.9665 6.4286 -1.1497 43 1 -3.9393 7.2433 -2.2509 44 1 -0.9209 1.9980 -5.3595 45 1 0.6410 0.1744 -4.8398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987596435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:30 Heat of formation + Delta-G solvation = 57.717756 kcal Electronic energy + Delta-G solvation = -29924.158192 eV Core-core repulsion = 25751.585377 eV Total energy + Delta-G solvation = -4172.572815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.02710 -40.04960 -39.05752 -38.30922 -38.03613 -35.69280 -35.05862 -33.54494 -33.35265 -31.91512 -30.50175 -30.24876 -28.63081 -27.11671 -26.48889 -24.06491 -22.77842 -22.45906 -22.15827 -21.83882 -20.25235 -19.86612 -18.96858 -18.20318 -17.84461 -17.77471 -17.12514 -16.45212 -16.41110 -16.12034 -16.08131 -15.46051 -14.93515 -14.89316 -14.80522 -14.76077 -14.52812 -14.46908 -14.38170 -14.12231 -13.89631 -13.31024 -13.19817 -13.06994 -13.01274 -12.57133 -12.47812 -12.37198 -12.30535 -12.13067 -11.95921 -11.76951 -11.41918 -11.00527 -10.88009 -10.86605 -10.42937 -10.16245 -9.98398 -9.56192 -9.02789 -8.29311 -7.57428 -5.41863 -1.67007 0.59228 0.80661 1.23812 1.28222 1.60196 1.70506 1.95581 2.17096 2.22433 2.58592 2.71860 3.04201 3.17175 3.34405 3.53079 3.58842 3.85690 3.90291 4.04347 4.07905 4.17265 4.34065 4.42627 4.48853 4.52646 4.69614 4.75135 4.80655 4.88342 4.94347 4.99435 5.10934 5.16442 5.24600 5.31145 5.53575 5.59583 5.77701 5.94962 6.07026 6.28778 6.34344 6.41161 6.74419 6.82096 6.98447 7.09335 7.50523 7.70314 8.15542 8.59339 9.92617 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009563 B = 0.003034 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2927.325304 B = 9227.073574 C =11501.552395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.109 3.891 3 H 0.110 0.890 4 C 0.103 3.897 5 H 0.225 0.775 6 N -0.526 5.526 7 C 0.396 3.604 8 H 0.296 0.704 9 C -0.093 4.093 10 N -0.551 5.551 11 Si 1.038 2.962 12 H -0.234 1.234 13 H -0.275 1.275 14 H -0.206 1.206 15 C -0.115 4.115 16 C 0.079 3.921 17 N -0.628 5.628 18 C 0.594 3.406 19 O -0.630 6.630 20 C -0.397 4.397 21 C -0.026 4.026 22 C -0.275 4.275 23 C 0.094 3.906 24 N -0.477 5.477 25 N -0.636 5.636 26 C 0.576 3.424 27 N -0.851 5.851 28 O -0.769 6.769 29 C -0.279 4.279 30 C -0.015 4.015 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.435 0.565 35 H 0.379 0.621 36 H 0.142 0.858 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.163 0.837 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.392 0.608 44 H 0.044 0.956 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.188 -34.930 53.566 66.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.006 3.994 3 H 0.127 0.873 4 C 0.001 3.999 5 H 0.241 0.759 6 N -0.116 5.116 7 C 0.214 3.786 8 H 0.311 0.689 9 C -0.329 4.329 10 N -0.176 5.176 11 Si 0.850 3.150 12 H -0.157 1.157 13 H -0.199 1.199 14 H -0.127 1.127 15 C -0.153 4.153 16 C -0.042 4.042 17 N -0.363 5.363 18 C 0.395 3.605 19 O -0.516 6.516 20 C -0.406 4.406 21 C -0.047 4.047 22 C -0.298 4.298 23 C -0.069 4.069 24 N -0.303 5.303 25 N -0.516 5.516 26 C 0.274 3.726 27 N -0.419 5.419 28 O -0.665 6.665 29 C -0.303 4.303 30 C -0.037 4.037 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.277 0.723 35 H 0.199 0.801 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.179 0.821 41 H 0.091 0.909 42 H 0.223 0.777 43 H 0.222 0.778 44 H 0.062 0.938 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 18.021 -34.927 51.738 64.972 hybrid contribution -1.750 0.167 -1.766 2.492 sum 16.270 -34.760 49.972 63.009 Atomic orbital electron populations 1.22883 0.95114 1.02558 1.04755 1.22478 0.94598 0.97910 0.84452 0.87276 1.23863 0.86349 0.91507 0.98194 0.75856 1.47520 1.27207 1.25370 1.11525 1.27253 0.78963 0.89022 0.83330 0.68925 1.28952 0.97671 0.95300 1.10958 1.69722 1.06494 1.00975 1.40406 0.84140 0.81598 0.82380 0.66864 1.15701 1.19892 1.12722 1.23320 0.96388 1.03771 0.91844 1.22545 0.95527 0.88430 0.97739 1.48153 1.54550 1.29633 1.03993 1.17907 0.79696 0.81923 0.81018 1.90552 1.53997 1.59740 1.47351 1.18122 1.18737 1.08331 0.95411 1.21572 0.93677 0.91292 0.98185 1.20640 1.09449 1.03639 0.96108 1.18881 0.98553 0.95216 0.94208 1.71580 1.19582 1.07154 1.32007 1.71474 1.33951 1.15031 1.31148 1.18523 0.85029 0.86062 0.82978 1.41896 1.54381 1.33316 1.12260 1.90415 1.67870 1.81890 1.26299 1.19725 1.11209 1.03062 0.96265 1.20162 0.93847 0.93931 0.95807 0.90844 0.89422 0.93046 0.72294 0.80116 0.84004 0.85902 0.92461 0.91397 0.82074 0.90917 0.77739 0.77836 0.93784 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 7.52 71.98 0.54 -2.57 16 2 C 0.11 1.05 2.72 45.36 0.12 1.17 16 3 H 0.11 1.35 6.25 -2.39 -0.01 1.33 16 4 C 0.10 -1.28 3.59 46.19 0.17 -1.12 16 5 H 0.22 -5.85 7.85 -2.39 -0.02 -5.87 16 6 N -0.53 9.18 3.35 -317.25 -1.06 8.11 16 7 C 0.40 -10.75 9.94 84.03 0.84 -9.91 16 8 H 0.30 -12.32 7.68 -2.91 -0.02 -12.34 16 9 C -0.09 1.98 5.50 84.86 0.47 2.45 16 10 N -0.55 7.60 13.06 21.65 0.28 7.89 16 11 Si 1.04 -20.22 29.55 68.60 2.03 -18.20 16 12 H -0.23 3.75 7.11 99.48 0.71 4.46 16 13 H -0.27 3.34 7.11 99.48 0.71 4.04 16 14 H -0.21 4.34 7.11 99.48 0.71 5.05 16 15 C -0.12 0.97 6.77 31.99 0.22 1.19 16 16 C 0.08 0.81 6.92 86.86 0.60 1.41 16 17 N -0.63 -14.42 3.07 -791.18 -2.43 -16.84 16 18 C 0.59 25.89 7.58 86.83 0.66 26.55 16 19 O -0.63 -32.54 16.69 -3.83 -0.06 -32.61 16 20 C -0.40 -21.58 5.01 -20.01 -0.10 -21.68 16 21 C -0.03 -1.33 6.26 22.47 0.14 -1.19 16 22 C -0.27 -18.31 9.47 22.57 0.21 -18.10 16 23 C 0.09 7.54 6.68 39.33 0.26 7.80 16 24 N -0.48 -42.93 10.78 -52.01 -0.56 -43.49 16 25 N -0.64 -54.19 10.04 -184.78 -1.85 -56.05 16 26 C 0.58 47.28 8.92 179.06 1.60 48.88 16 27 N -0.85 -52.66 8.88 -184.78 -1.64 -54.30 16 28 O -0.77 -70.41 17.48 -3.90 -0.07 -70.48 16 29 C -0.28 -21.16 9.99 22.57 0.23 -20.93 16 30 C -0.02 -0.99 9.57 22.48 0.22 -0.78 16 31 H 0.07 0.43 5.78 -2.39 -0.01 0.42 16 32 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 33 H 0.05 1.79 4.50 -2.39 -0.01 1.78 16 34 H 0.44 -5.40 7.27 -92.71 -0.67 -6.07 16 35 H 0.38 -5.39 8.31 -92.70 -0.77 -6.16 16 36 H 0.14 -2.38 8.14 -2.39 -0.02 -2.40 16 37 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 38 H 0.06 0.99 7.97 -2.39 -0.02 0.97 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.16 5.52 2.50 -2.91 -0.01 5.51 16 41 H 0.07 4.94 7.37 -2.91 -0.02 4.92 16 42 H 0.39 21.25 8.93 -92.71 -0.83 20.42 16 43 H 0.39 21.34 8.93 -92.71 -0.83 20.51 16 44 H 0.04 3.46 8.06 -2.91 -0.02 3.44 16 45 H 0.08 4.86 7.74 -2.91 -0.02 4.84 16 Total: -1.00 -216.90 372.21 -0.43 -217.34 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -1.23 Total: 45.47 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: 6.16 Total: 13.16 kcal Atomic # 7 Polarization: -147.43 SS G_CDS: -7.26 Total: -154.69 kcal Atomic # 8 Polarization: -102.95 SS G_CDS: -0.13 Total: -103.09 kcal Atomic # 14 Polarization: -20.22 SS G_CDS: 2.03 Total: -18.20 kcal Total: -216.90 -0.43 -217.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987596435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 275.054 kcal (2) G-P(sol) polarization free energy of solvation -216.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -217.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds