Wall clock time and date at job start Wed Apr 1 2020 05:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.87509 * 2 1 4 4 C 1.54322 * 109.88488 * 121.18162 * 2 1 3 5 5 H 1.08992 * 110.72010 * 23.24391 * 4 2 1 6 6 N 1.46498 * 110.71772 * 259.97331 * 4 2 1 7 7 C 1.36939 * 120.00018 * 155.00126 * 6 4 2 8 8 H 1.07998 * 119.99830 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99810 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00330 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99558 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47469 * 90.00115 * 11 9 7 13 13 H 1.48505 * 109.47028 * 210.00018 * 11 9 7 14 14 H 1.48506 * 109.47224 * 329.99841 * 11 9 7 15 15 C 1.55156 * 102.94146 * 141.61032 * 4 2 1 16 16 C 1.55123 * 101.48752 * 324.33143 * 15 4 2 17 17 N 1.47030 * 109.88127 * 238.99034 * 2 1 3 18 18 C 1.34776 * 125.64925 * 61.60306 * 17 2 1 19 19 O 1.21527 * 120.00325 * 183.13893 * 18 17 2 20 20 C 1.48002 * 119.99767 * 3.13623 * 18 17 2 21 21 C 1.39657 * 119.95234 * 183.82173 * 20 18 17 22 22 C 1.37652 * 120.04841 * 180.02562 * 21 20 18 23 23 C 1.40044 * 119.95112 * 0.02562 * 22 21 20 24 24 N 1.36258 * 120.04409 * 180.02562 * 23 22 21 25 25 N 1.28998 * 119.99673 * 179.97438 * 24 23 22 26 26 C 1.34773 * 119.99565 * 180.02562 * 25 24 23 27 27 N 1.34783 * 119.99820 * 180.02562 * 26 25 24 28 28 O 1.21563 * 120.00493 * 359.97438 * 26 25 24 29 29 C 1.40032 * 119.90893 * 0.27409 * 23 22 21 30 30 C 1.37662 * 119.95269 * 359.44579 * 29 23 22 31 31 H 1.09002 * 109.46953 * 197.96695 * 1 2 3 32 32 H 1.08999 * 109.46834 * 317.96585 * 1 2 3 33 33 H 1.09002 * 109.47398 * 77.96537 * 1 2 3 34 34 H 0.97007 * 120.00197 * 334.99574 * 6 4 2 35 35 H 0.97001 * 120.00091 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00766 * 82.57380 * 15 4 2 37 37 H 1.09001 * 110.99973 * 206.38682 * 15 4 2 38 38 H 1.09004 * 110.49853 * 278.45704 * 16 15 4 39 39 H 1.08997 * 110.34993 * 156.06095 * 16 15 4 40 40 H 1.08003 * 119.97179 * 0.05055 * 21 20 18 41 41 H 1.08004 * 120.02670 * 179.97438 * 22 21 20 42 42 H 0.96997 * 119.99961 * 359.97438 * 27 26 25 43 43 H 0.97004 * 119.99869 * 179.72273 * 27 26 25 44 44 H 1.08007 * 120.02346 * 179.72611 * 29 23 22 45 45 H 1.08000 * 119.98001 * 180.27235 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7514 1.2416 5 1 1.3053 -1.4483 1.6161 6 7 2.4555 0.1927 2.2877 7 6 2.4584 -0.1998 3.5996 8 1 2.1649 -1.2052 3.8631 9 6 2.8385 0.6946 4.5908 10 7 3.1967 1.9197 4.2697 11 14 2.8417 0.1593 6.3805 12 1 4.1711 -0.4046 6.7262 13 1 2.5603 1.3313 7.2482 14 1 1.7959 -0.8740 6.5900 15 6 3.2877 -1.5152 0.6900 16 6 2.8100 -1.8814 -0.7397 17 7 2.0300 -0.7123 -1.1851 18 6 1.8074 -0.3584 -2.4663 19 8 2.2236 -1.0556 -3.3705 20 6 1.0558 0.8794 -2.7722 21 6 0.7564 1.2039 -4.0971 22 6 0.0580 2.3549 -4.3838 23 6 -0.3519 3.2010 -3.3459 24 7 -1.0437 4.3406 -3.6275 25 7 -1.4212 5.1190 -2.6707 26 6 -2.1060 6.2459 -2.9492 27 7 -2.5000 7.0595 -1.9495 28 8 -2.3676 6.5290 -4.1021 29 6 -0.0451 2.8770 -2.0185 30 6 0.6485 1.7220 -1.7357 31 1 -0.3633 -0.9776 0.3170 32 1 -0.3633 0.7633 0.6881 33 1 -0.3634 0.2143 -1.0051 34 1 2.7189 1.0959 2.0511 35 1 3.4619 2.5448 4.9623 36 1 4.1655 -0.8698 0.6589 37 1 3.4856 -2.4125 1.2763 38 1 2.1801 -2.7707 -0.7156 39 1 3.6655 -2.0391 -1.3964 40 1 1.0727 0.5511 -4.8972 41 1 -0.1731 2.6058 -5.4086 42 1 -2.2910 6.8339 -1.0296 43 1 -2.9894 7.8727 -2.1503 44 1 -0.3564 3.5304 -1.2169 45 1 0.8815 1.4694 -0.7118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987596445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:37 Heat of formation + Delta-G solvation = 87.366591 kcal Electronic energy + Delta-G solvation = -29681.897573 eV Core-core repulsion = 25510.610428 eV Total energy + Delta-G solvation = -4171.287145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.13717 -40.36007 -39.08740 -37.79349 -36.63304 -34.34785 -34.08565 -33.04396 -31.70021 -31.47297 -30.44468 -29.35625 -27.58865 -25.50301 -23.99841 -23.28193 -22.99743 -22.25550 -20.56418 -20.35654 -19.62417 -18.53124 -17.73183 -17.40876 -17.12171 -16.47941 -16.21113 -15.87634 -15.77171 -15.25164 -15.15314 -14.63505 -14.43987 -14.17884 -13.99710 -13.80029 -13.58944 -13.38663 -13.17961 -12.90573 -12.72626 -12.30145 -12.12101 -11.79130 -11.72788 -11.46725 -11.32527 -11.20808 -10.96537 -10.92712 -10.75814 -10.37312 -10.22935 -10.11991 -9.99586 -9.83746 -9.37136 -9.31217 -9.08914 -9.02685 -8.60821 -7.18537 -5.94639 -3.25807 -0.88513 1.02858 1.16281 2.38940 2.63948 2.87784 3.14921 3.33211 3.39255 3.40579 3.60924 3.99166 4.23029 4.42868 4.44658 4.56855 4.75979 4.85278 4.96592 4.97226 5.11047 5.20472 5.33480 5.34310 5.46559 5.51182 5.62212 5.66134 5.70633 5.77189 5.83224 5.95493 5.99874 6.02176 6.10881 6.12170 6.27485 6.28984 6.33554 6.41831 6.47968 6.74885 6.86071 7.10513 7.47873 7.54875 8.04673 8.14637 8.22018 9.34370 9.85445 10.20082 11.27179 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.003020 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.129797 B = 9268.701816 C =12046.370804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 H 0.095 0.905 4 C 0.178 3.822 5 H 0.072 0.928 6 N -0.714 5.714 7 C -0.247 4.247 8 H 0.073 0.927 9 C -0.007 4.007 10 N -0.929 5.929 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.106 3.894 17 N -0.597 5.597 18 C 0.566 3.434 19 O -0.539 6.539 20 C -0.074 4.074 21 C -0.080 4.080 22 C -0.036 4.036 23 C 0.020 3.980 24 N -0.067 5.067 25 N -0.318 5.318 26 C 0.652 3.348 27 N -0.820 5.820 28 O -0.556 6.556 29 C -0.072 4.072 30 C -0.138 4.138 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.385 0.615 35 H 0.257 0.743 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.411 0.589 43 H 0.418 0.582 44 H 0.151 0.849 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 1.785 -12.031 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.004 4.004 3 H 0.112 0.888 4 C 0.066 3.934 5 H 0.090 0.910 6 N -0.354 5.354 7 C -0.378 4.378 8 H 0.091 0.909 9 C -0.203 4.203 10 N -0.576 5.576 11 Si 0.739 3.261 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.206 1.206 15 C -0.199 4.199 16 C -0.016 4.016 17 N -0.330 5.330 18 C 0.355 3.645 19 O -0.418 6.418 20 C -0.080 4.080 21 C -0.099 4.099 22 C -0.060 4.060 23 C -0.087 4.087 24 N 0.039 4.961 25 N -0.221 5.221 26 C 0.348 3.652 27 N -0.389 5.389 28 O -0.426 6.426 29 C -0.096 4.096 30 C -0.156 4.156 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.220 0.780 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.241 0.759 43 H 0.251 0.749 44 H 0.168 0.832 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.082 1.734 -13.212 15.585 hybrid contribution 0.035 0.440 1.475 1.540 sum -8.048 2.174 -11.737 14.396 Atomic orbital electron populations 1.22712 0.94360 1.03809 1.02447 1.22514 0.94477 0.97148 0.86245 0.88798 1.21291 0.93948 0.91522 0.86596 0.90976 1.42330 1.79376 1.11728 1.01951 1.19189 1.38856 0.97024 0.82739 0.90904 1.24752 1.01598 0.95842 0.98155 1.69644 1.50825 1.04652 1.32484 0.86191 0.77772 0.77344 0.84823 1.21607 1.21701 1.20643 1.23661 1.01184 1.01968 0.93044 1.22380 0.95088 0.87599 0.96537 1.48455 1.51492 1.28467 1.04565 1.17871 0.80150 0.84889 0.81558 1.90765 1.52335 1.53860 1.44791 1.20405 0.97922 0.95157 0.94493 1.21234 0.96409 0.96230 0.96048 1.21170 0.93925 0.91756 0.99119 1.19348 1.02071 0.93256 0.94054 1.72579 0.94802 0.98109 1.30604 1.72261 1.12197 1.05123 1.32469 1.17562 0.79868 0.83189 0.84572 1.42742 1.60421 1.26065 1.09628 1.90972 1.56130 1.75194 1.20313 1.22210 0.94547 0.96145 0.96720 1.23411 0.95870 0.93054 1.03279 0.91614 0.90126 0.91640 0.78024 0.93278 0.90491 0.90214 0.91426 0.90737 0.83175 0.83416 0.75908 0.74892 0.83158 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 7.78 37.16 0.29 -1.80 16 2 C 0.10 1.37 2.46 -66.95 -0.16 1.20 16 3 H 0.09 1.32 5.69 -51.93 -0.30 1.03 16 4 C 0.18 2.92 3.13 -66.10 -0.21 2.72 16 5 H 0.07 1.19 7.51 -51.93 -0.39 0.79 16 6 N -0.71 -15.23 5.22 -51.66 -0.27 -15.50 16 7 C -0.25 -6.07 9.96 -15.06 -0.15 -6.22 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 10 N -0.93 -25.61 13.06 55.49 0.72 -24.88 16 11 Si 0.91 20.67 29.55 -169.99 -5.02 15.65 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 C -0.16 -2.36 6.78 -24.47 -0.17 -2.52 16 16 C 0.11 1.43 6.90 -2.41 -0.02 1.41 16 17 N -0.60 -8.26 3.06 -168.70 -0.52 -8.78 16 18 C 0.57 8.14 7.57 -12.26 -0.09 8.05 16 19 O -0.54 -9.06 16.61 5.34 0.09 -8.97 16 20 C -0.07 -0.90 5.33 -104.84 -0.56 -1.46 16 21 C -0.08 -0.83 9.57 -39.27 -0.38 -1.21 16 22 C -0.04 -0.35 9.99 -39.12 -0.39 -0.74 16 23 C 0.02 0.22 6.68 -84.55 -0.56 -0.34 16 24 N -0.07 -0.85 10.78 32.21 0.35 -0.51 16 25 N -0.32 -3.89 10.04 27.63 0.28 -3.61 16 26 C 0.65 8.02 8.92 -86.92 -0.78 7.24 16 27 N -0.82 -5.94 8.88 27.63 0.25 -5.69 16 28 O -0.56 -8.92 17.48 5.31 0.09 -8.83 16 29 C -0.07 -0.79 9.47 -39.12 -0.37 -1.16 16 30 C -0.14 -1.56 6.45 -39.27 -0.25 -1.82 16 31 H 0.06 0.77 7.69 -51.93 -0.40 0.38 16 32 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.06 0.73 4.80 -51.93 -0.25 0.48 16 34 H 0.39 8.80 7.57 -40.82 -0.31 8.49 16 35 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.00 8.07 -51.93 -0.42 0.58 16 40 H 0.15 1.44 7.64 -52.48 -0.40 1.03 16 41 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 42 H 0.41 2.01 8.93 -40.82 -0.36 1.65 16 43 H 0.42 2.19 8.93 -40.82 -0.36 1.82 16 44 H 0.15 1.51 7.37 -52.48 -0.39 1.12 16 45 H 0.19 2.15 1.98 -58.92 -0.12 2.04 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -32.61 375.40 -7.62 -40.23 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.35 Total: 12.15 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -3.89 Total: 3.09 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: 0.81 Total: -58.97 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.61 -7.62 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987596445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.599 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.68 seconds