Wall clock time and date at job start Wed Apr 1 2020 05:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.87509 * 2 1 4 4 C 1.54322 * 109.88488 * 121.18162 * 2 1 3 5 5 H 1.08992 * 110.72010 * 23.24391 * 4 2 1 6 6 N 1.46498 * 110.71772 * 259.97331 * 4 2 1 7 7 C 1.36939 * 120.00018 * 155.00126 * 6 4 2 8 8 H 1.07998 * 119.99830 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99810 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00330 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99558 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.47469 * 90.00115 * 11 9 7 13 13 H 1.48505 * 109.47028 * 210.00018 * 11 9 7 14 14 H 1.48506 * 109.47224 * 329.99841 * 11 9 7 15 15 C 1.55156 * 102.94146 * 141.61032 * 4 2 1 16 16 C 1.55123 * 101.48752 * 324.33143 * 15 4 2 17 17 N 1.47030 * 109.88127 * 238.99034 * 2 1 3 18 18 C 1.34776 * 125.64925 * 61.60306 * 17 2 1 19 19 O 1.21527 * 120.00325 * 183.13893 * 18 17 2 20 20 C 1.48002 * 119.99767 * 3.13623 * 18 17 2 21 21 C 1.39657 * 119.95234 * 183.82173 * 20 18 17 22 22 C 1.37652 * 120.04841 * 180.02562 * 21 20 18 23 23 C 1.40044 * 119.95112 * 0.02562 * 22 21 20 24 24 N 1.36258 * 120.04409 * 180.02562 * 23 22 21 25 25 N 1.28998 * 119.99673 * 179.97438 * 24 23 22 26 26 C 1.34773 * 119.99565 * 180.02562 * 25 24 23 27 27 N 1.34783 * 119.99820 * 180.02562 * 26 25 24 28 28 O 1.21563 * 120.00493 * 359.97438 * 26 25 24 29 29 C 1.40032 * 119.90893 * 0.27409 * 23 22 21 30 30 C 1.37662 * 119.95269 * 359.44579 * 29 23 22 31 31 H 1.09002 * 109.46953 * 197.96695 * 1 2 3 32 32 H 1.08999 * 109.46834 * 317.96585 * 1 2 3 33 33 H 1.09002 * 109.47398 * 77.96537 * 1 2 3 34 34 H 0.97007 * 120.00197 * 334.99574 * 6 4 2 35 35 H 0.97001 * 120.00091 * 179.97438 * 10 9 7 36 36 H 1.09003 * 111.00766 * 82.57380 * 15 4 2 37 37 H 1.09001 * 110.99973 * 206.38682 * 15 4 2 38 38 H 1.09004 * 110.49853 * 278.45704 * 16 15 4 39 39 H 1.08997 * 110.34993 * 156.06095 * 16 15 4 40 40 H 1.08003 * 119.97179 * 0.05055 * 21 20 18 41 41 H 1.08004 * 120.02670 * 179.97438 * 22 21 20 42 42 H 0.96997 * 119.99961 * 359.97438 * 27 26 25 43 43 H 0.97004 * 119.99869 * 179.72273 * 27 26 25 44 44 H 1.08007 * 120.02346 * 179.72611 * 29 23 22 45 45 H 1.08000 * 119.98001 * 180.27235 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7514 1.2416 5 1 1.3053 -1.4483 1.6161 6 7 2.4555 0.1927 2.2877 7 6 2.4584 -0.1998 3.5996 8 1 2.1649 -1.2052 3.8631 9 6 2.8385 0.6946 4.5908 10 7 3.1967 1.9197 4.2697 11 14 2.8417 0.1593 6.3805 12 1 4.1711 -0.4046 6.7262 13 1 2.5603 1.3313 7.2482 14 1 1.7959 -0.8740 6.5900 15 6 3.2877 -1.5152 0.6900 16 6 2.8100 -1.8814 -0.7397 17 7 2.0300 -0.7123 -1.1851 18 6 1.8074 -0.3584 -2.4663 19 8 2.2236 -1.0556 -3.3705 20 6 1.0558 0.8794 -2.7722 21 6 0.7564 1.2039 -4.0971 22 6 0.0580 2.3549 -4.3838 23 6 -0.3519 3.2010 -3.3459 24 7 -1.0437 4.3406 -3.6275 25 7 -1.4212 5.1190 -2.6707 26 6 -2.1060 6.2459 -2.9492 27 7 -2.5000 7.0595 -1.9495 28 8 -2.3676 6.5290 -4.1021 29 6 -0.0451 2.8770 -2.0185 30 6 0.6485 1.7220 -1.7357 31 1 -0.3633 -0.9776 0.3170 32 1 -0.3633 0.7633 0.6881 33 1 -0.3634 0.2143 -1.0051 34 1 2.7189 1.0959 2.0511 35 1 3.4619 2.5448 4.9623 36 1 4.1655 -0.8698 0.6589 37 1 3.4856 -2.4125 1.2763 38 1 2.1801 -2.7707 -0.7156 39 1 3.6655 -2.0391 -1.3964 40 1 1.0727 0.5511 -4.8972 41 1 -0.1731 2.6058 -5.4086 42 1 -2.2910 6.8339 -1.0296 43 1 -2.9894 7.8727 -2.1503 44 1 -0.3564 3.5304 -1.2169 45 1 0.8815 1.4694 -0.7118 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987596445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:36 Heat of formation + Delta-G solvation = 55.201211 kcal Electronic energy + Delta-G solvation = -29683.292368 eV Core-core repulsion = 25510.610428 eV Total energy + Delta-G solvation = -4172.681941 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87454 -40.06737 -39.08691 -38.35067 -38.06421 -35.83215 -35.06864 -33.57370 -33.34961 -31.98619 -30.51439 -30.24202 -28.92896 -26.84630 -26.10131 -24.21988 -23.13522 -22.32377 -22.12978 -21.87780 -20.21205 -19.92503 -19.00216 -18.19787 -17.85608 -17.68232 -17.16549 -16.71492 -16.38371 -16.00351 -15.83612 -15.42704 -15.13487 -14.96514 -14.89564 -14.80865 -14.48173 -14.39492 -14.25300 -14.05685 -13.83818 -13.53476 -13.13358 -13.07581 -12.97377 -12.79029 -12.59240 -12.41702 -12.22102 -12.03162 -11.84905 -11.74497 -11.36309 -11.00902 -10.92022 -10.86163 -10.43434 -10.17684 -10.01267 -9.56302 -9.08835 -8.32842 -7.60572 -5.44408 -1.65971 0.56906 0.81896 1.19171 1.24885 1.57564 1.73104 1.96933 2.16942 2.29492 2.60248 2.69568 2.88132 3.19563 3.32306 3.49919 3.55945 3.80595 3.92570 4.03118 4.12016 4.21043 4.40105 4.42283 4.46746 4.53030 4.69250 4.78772 4.83939 4.89907 4.96685 5.00557 5.07563 5.17695 5.21834 5.28244 5.51855 5.58850 5.76072 5.96843 6.05091 6.26252 6.32550 6.38973 6.71541 6.81268 6.95059 7.07022 7.47718 7.71670 8.12514 8.56109 9.89294 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.003020 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.129797 B = 9268.701816 C =12046.370804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.110 3.890 3 H 0.081 0.919 4 C 0.101 3.899 5 H 0.209 0.791 6 N -0.527 5.527 7 C 0.401 3.599 8 H 0.298 0.702 9 C -0.095 4.095 10 N -0.553 5.553 11 Si 1.041 2.959 12 H -0.241 1.241 13 H -0.278 1.278 14 H -0.193 1.193 15 C -0.118 4.118 16 C 0.091 3.909 17 N -0.625 5.625 18 C 0.593 3.407 19 O -0.628 6.628 20 C -0.397 4.397 21 C -0.016 4.016 22 C -0.276 4.276 23 C 0.092 3.908 24 N -0.474 5.474 25 N -0.637 5.637 26 C 0.577 3.423 27 N -0.851 5.851 28 O -0.767 6.767 29 C -0.275 4.275 30 C -0.044 4.044 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.436 0.564 35 H 0.380 0.620 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.394 0.606 43 H 0.393 0.607 44 H 0.070 0.930 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.087 -32.401 56.336 68.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.006 3.994 3 H 0.098 0.902 4 C -0.002 4.002 5 H 0.225 0.775 6 N -0.117 5.117 7 C 0.219 3.781 8 H 0.313 0.687 9 C -0.330 4.330 10 N -0.177 5.177 11 Si 0.852 3.148 12 H -0.164 1.164 13 H -0.203 1.203 14 H -0.113 1.113 15 C -0.155 4.155 16 C -0.030 4.030 17 N -0.360 5.360 18 C 0.394 3.606 19 O -0.515 6.515 20 C -0.406 4.406 21 C -0.038 4.038 22 C -0.299 4.299 23 C -0.072 4.072 24 N -0.300 5.300 25 N -0.517 5.517 26 C 0.274 3.726 27 N -0.418 5.418 28 O -0.663 6.663 29 C -0.299 4.299 30 C -0.065 4.065 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.278 0.722 35 H 0.199 0.801 36 H 0.108 0.892 37 H 0.185 0.815 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.222 0.778 43 H 0.222 0.778 44 H 0.089 0.911 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 22.928 -31.985 54.512 67.234 hybrid contribution -0.406 2.548 -1.184 2.839 sum 22.522 -29.437 53.328 64.944 Atomic orbital electron populations 1.22770 0.93983 1.04231 1.03760 1.22159 0.95334 0.96523 0.85358 0.90162 1.23818 1.01171 0.90106 0.85111 0.77457 1.47361 1.38466 1.17771 1.08061 1.27270 0.69453 1.02028 0.79335 0.68673 1.29044 0.98043 0.94833 1.11121 1.69741 0.96375 1.04253 1.47356 0.84096 0.83838 0.81618 0.65241 1.16449 1.20299 1.11321 1.23448 0.95241 1.03412 0.93445 1.22523 0.95581 0.88847 0.96094 1.47979 1.55014 1.29462 1.03515 1.17840 0.77805 0.83970 0.81010 1.90545 1.57220 1.57076 1.46662 1.18194 1.26007 1.03309 0.93122 1.20215 0.94410 0.93040 0.96158 1.19744 1.14923 1.00513 0.94752 1.18918 1.00969 0.93634 0.93633 1.71586 1.20075 1.06268 1.32090 1.71471 1.39049 1.11434 1.29753 1.18520 0.84204 0.86846 0.82995 1.41895 1.65672 1.26410 1.07859 1.90417 1.70463 1.81249 1.24209 1.20655 1.13174 1.01235 0.94820 1.22040 0.93977 0.91269 0.99200 0.88273 0.89905 0.94113 0.72186 0.80080 0.89214 0.81463 0.89534 0.92499 0.90165 0.93562 0.77795 0.77797 0.91133 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.31 7.78 71.98 0.56 -2.75 16 2 C 0.11 1.27 2.46 45.34 0.11 1.38 16 3 H 0.08 1.27 5.69 -2.38 -0.01 1.25 16 4 C 0.10 -1.14 3.13 46.18 0.14 -1.00 16 5 H 0.21 -4.61 7.51 -2.39 -0.02 -4.63 16 6 N -0.53 9.67 5.22 -317.35 -1.66 8.02 16 7 C 0.40 -11.64 9.96 84.03 0.84 -10.81 16 8 H 0.30 -13.17 7.83 -2.91 -0.02 -13.20 16 9 C -0.09 2.17 5.50 84.86 0.47 2.64 16 10 N -0.55 7.82 13.06 21.65 0.28 8.10 16 11 Si 1.04 -22.52 29.55 68.60 2.03 -20.50 16 12 H -0.24 4.45 7.11 99.48 0.71 5.16 16 13 H -0.28 3.68 7.11 99.48 0.71 4.38 16 14 H -0.19 4.73 7.11 99.48 0.71 5.44 16 15 C -0.12 1.07 6.78 32.06 0.22 1.29 16 16 C 0.09 0.91 6.90 86.93 0.60 1.51 16 17 N -0.63 -15.10 3.06 -805.94 -2.47 -17.57 16 18 C 0.59 26.49 7.57 86.83 0.66 27.15 16 19 O -0.63 -32.75 16.61 -3.80 -0.06 -32.81 16 20 C -0.40 -22.20 5.33 -20.00 -0.11 -22.31 16 21 C -0.02 -1.06 9.57 22.47 0.22 -0.84 16 22 C -0.28 -21.18 9.99 22.57 0.23 -20.96 16 23 C 0.09 7.42 6.68 39.33 0.26 7.68 16 24 N -0.47 -43.04 10.78 -52.01 -0.56 -43.60 16 25 N -0.64 -54.73 10.04 -184.77 -1.85 -56.59 16 26 C 0.58 47.61 8.92 179.05 1.60 49.21 16 27 N -0.85 -53.02 8.88 -184.76 -1.64 -54.66 16 28 O -0.77 -70.63 17.48 -3.91 -0.07 -70.70 16 29 C -0.28 -18.75 9.47 22.57 0.21 -18.54 16 30 C -0.04 -2.31 6.45 22.47 0.14 -2.16 16 31 H 0.10 0.79 7.69 -2.39 -0.02 0.77 16 32 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 33 H 0.04 1.44 4.80 -2.39 -0.01 1.43 16 34 H 0.44 -5.64 7.57 -92.70 -0.70 -6.34 16 35 H 0.38 -5.52 8.31 -92.71 -0.77 -6.29 16 36 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.17 -3.48 8.14 -2.39 -0.02 -3.49 16 38 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.06 0.94 8.07 -2.39 -0.02 0.92 16 40 H 0.08 5.17 7.64 -2.91 -0.02 5.15 16 41 H 0.05 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.39 21.41 8.93 -92.71 -0.83 20.58 16 43 H 0.39 21.49 8.93 -92.71 -0.83 20.66 16 44 H 0.07 4.89 7.37 -2.91 -0.02 4.87 16 45 H 0.17 6.04 1.98 -8.96 -0.02 6.02 16 Total: -1.00 -220.28 375.40 -1.13 -221.41 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -1.27 Total: 47.38 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 6.15 Total: 11.51 kcal Atomic # 7 Polarization: -148.39 SS G_CDS: -7.90 Total: -156.29 kcal Atomic # 8 Polarization: -103.38 SS G_CDS: -0.13 Total: -103.51 kcal Atomic # 14 Polarization: -22.52 SS G_CDS: 2.03 Total: -20.50 kcal Total: -220.28 -1.13 -221.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987596445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 276.610 kcal (2) G-P(sol) polarization free energy of solvation -220.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -221.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds