Wall clock time and date at job start Wed Apr 1 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00114 * 2 1 4 4 C 1.54331 * 109.87888 * 121.09263 * 2 1 3 5 5 C 1.55149 * 102.94321 * 97.22242 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88562 * 238.89829 * 2 1 3 18 18 C 1.34781 * 125.65005 * 59.57409 * 17 2 1 19 19 O 1.21488 * 119.99644 * 359.97438 * 18 17 2 20 20 C 1.48344 * 120.00018 * 180.02562 * 18 17 2 21 21 C 1.41892 * 126.84023 * 179.97438 * 20 18 17 22 22 C 1.36732 * 103.81773 * 180.02562 * 21 20 18 23 23 C 1.47850 * 126.81632 * 179.97438 * 22 21 20 24 24 C 1.41046 * 126.06564 * 179.71491 * 23 22 21 25 25 C 1.35010 * 107.84340 * 179.82665 * 24 23 22 26 26 N 1.35088 * 108.03558 * 0.43338 * 25 24 23 27 27 C 1.46492 * 125.91314 * 179.68829 * 26 25 24 28 28 N 1.31816 * 126.06908 * 0.02562 * 23 22 21 29 29 O 1.34458 * 106.36495 * 359.97438 * 22 21 20 30 30 N 1.20877 * 111.73248 * 359.70971 * 29 22 21 31 31 H 1.08999 * 109.47742 * 298.91261 * 1 2 3 32 32 H 1.09004 * 109.46495 * 58.91252 * 1 2 3 33 33 H 1.08999 * 109.47367 * 178.90506 * 1 2 3 34 34 H 1.09007 * 110.71733 * 338.85884 * 4 2 1 35 35 H 1.08999 * 110.71890 * 215.59355 * 4 2 1 36 36 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 39 39 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 40 40 H 1.08004 * 128.09170 * 0.02562 * 21 20 18 41 41 H 1.07996 * 126.07537 * 359.96235 * 24 23 22 42 42 H 1.08001 * 125.98254 * 180.15768 * 25 24 23 43 43 H 1.08999 * 109.47438 * 270.02026 * 27 26 25 44 44 H 1.08997 * 109.47390 * 30.01529 * 27 26 25 45 45 H 1.08999 * 109.47079 * 150.01686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 2.3517 -2.1695 0.6927 6 1 1.4452 -2.7738 0.6612 7 7 3.3935 -2.8312 1.4820 8 6 3.4566 -4.1985 1.5232 9 1 2.7381 -4.7890 0.9742 10 6 4.4402 -4.8255 2.2758 11 7 5.3155 -4.1058 2.9454 12 14 4.5215 -6.6907 2.3383 13 1 3.4324 -7.2618 1.5059 14 1 5.8349 -7.1466 1.8165 15 1 4.3615 -7.1463 3.7426 16 6 2.8568 -1.8499 -0.7365 17 7 2.0301 -0.7141 -1.1837 18 6 1.7757 -0.3845 -2.4656 19 8 1.0778 0.5772 -2.7185 20 6 2.3469 -1.1968 -3.5677 21 6 2.1741 -0.9833 -4.9598 22 6 2.8938 -1.9926 -5.5368 23 6 3.0581 -2.2486 -6.9836 24 6 3.8098 -3.2925 -7.5621 25 6 3.7050 -3.1836 -8.9037 26 7 2.9292 -2.1120 -9.1769 27 6 2.5659 -1.6323 -10.5126 28 7 2.5329 -1.5384 -7.9620 29 8 3.4225 -2.7060 -4.5271 30 7 3.1167 -2.2513 -3.4496 31 1 -0.3634 0.4968 0.8995 32 1 -0.3632 0.5307 -0.8801 33 1 -0.3634 -1.0274 -0.0196 34 1 1.2916 -0.7889 2.0202 35 1 2.9655 -0.2831 1.6184 36 1 4.0386 -2.3008 1.9755 37 1 6.0030 -4.5440 3.4709 38 1 3.9091 -1.5669 -0.7125 39 1 2.7089 -2.7082 -1.3919 40 1 1.6068 -0.2054 -5.4492 41 1 4.3679 -4.0464 -7.0269 42 1 4.1649 -3.8360 -9.6312 43 1 3.3097 -0.9128 -10.8550 44 1 2.5300 -2.4744 -11.2037 45 1 1.5879 -1.1528 -10.4729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988888387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:08 Heat of formation + Delta-G solvation = 138.848412 kcal Electronic energy + Delta-G solvation = -29440.012951 eV Core-core repulsion = 25270.958225 eV Total energy + Delta-G solvation = -4169.054726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.07748 -41.50464 -39.93013 -37.46015 -34.52654 -34.19111 -34.01700 -32.04745 -31.36756 -31.10397 -30.49662 -28.34240 -27.15779 -25.54073 -25.05322 -23.73260 -23.44470 -22.29639 -21.25257 -20.94972 -20.06271 -18.76405 -17.89922 -17.85042 -17.35042 -16.93692 -16.59810 -15.89484 -15.56301 -15.43497 -14.80048 -14.53127 -14.20475 -14.16248 -13.94856 -13.47876 -13.32353 -13.26665 -13.08330 -12.97733 -12.96634 -12.88216 -12.41330 -11.97098 -11.85741 -11.65542 -11.18818 -11.17143 -10.95457 -10.73914 -10.66353 -10.64199 -10.49638 -10.21362 -10.02943 -9.96971 -9.74245 -9.33349 -9.00618 -8.80721 -8.42312 -7.07083 -5.82821 -3.13450 0.67354 1.34500 1.66774 1.78565 2.71450 2.76739 2.96459 3.26789 3.41735 3.47981 3.49875 3.92956 4.13248 4.14494 4.45650 4.55534 4.65560 4.79641 4.84589 4.91971 4.93515 5.13123 5.17872 5.23632 5.26768 5.35988 5.48194 5.56669 5.61070 5.65580 5.76912 5.85529 5.89472 6.02980 6.10996 6.20775 6.26376 6.30471 6.45917 6.49573 6.57361 6.64550 6.86327 7.11087 7.64159 7.67876 7.91655 8.21765 8.34627 9.46718 9.99567 10.34833 11.39268 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.002724 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.815699 B =10276.376324 C =12635.584542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.139 3.861 3 H 0.074 0.926 4 C -0.138 4.138 5 C 0.174 3.826 6 H 0.068 0.932 7 N -0.710 5.710 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.009 4.009 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.291 1.291 16 C 0.070 3.930 17 N -0.593 5.593 18 C 0.609 3.391 19 O -0.535 6.535 20 C -0.022 4.022 21 C -0.141 4.141 22 C 0.031 3.969 23 C 0.142 3.858 24 C -0.243 4.243 25 C 0.057 3.943 26 N -0.367 5.367 27 C 0.100 3.900 28 N -0.262 5.262 29 O 0.141 5.859 30 N -0.304 5.304 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.387 0.613 37 H 0.256 0.744 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.185 0.815 41 H 0.161 0.839 42 H 0.182 0.818 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.420 5.484 -24.840 26.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.177 4.177 5 C 0.061 3.939 6 H 0.086 0.914 7 N -0.349 5.349 8 C -0.376 4.376 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.204 1.204 14 H -0.217 1.217 15 H -0.218 1.218 16 C -0.056 4.056 17 N -0.325 5.325 18 C 0.395 3.605 19 O -0.411 6.411 20 C -0.179 4.179 21 C -0.165 4.165 22 C -0.034 4.034 23 C -0.022 4.022 24 C -0.272 4.272 25 C -0.088 4.088 26 N -0.151 5.151 27 C -0.041 4.041 28 N -0.088 5.088 29 O 0.062 5.938 30 N -0.002 5.002 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.222 0.778 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.202 0.798 41 H 0.178 0.822 42 H 0.199 0.801 43 H 0.097 0.903 44 H 0.110 0.890 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.097 6.229 -24.348 25.862 hybrid contribution 0.657 -1.120 -0.262 1.325 sum -5.440 5.109 -24.611 25.718 Atomic orbital electron populations 1.22148 0.94740 1.02508 1.02604 1.21585 0.94583 0.95976 0.84203 0.90801 1.23059 1.01827 0.97209 0.95642 1.21290 0.92900 0.91217 0.88451 0.91419 1.42318 1.33343 1.04097 1.55186 1.19300 1.11330 0.82442 1.24575 0.90905 1.24764 0.97976 0.98020 0.99779 1.69666 1.19104 1.34069 1.34893 0.86109 0.77432 0.85336 0.77255 1.20420 1.21735 1.21823 1.23758 0.94764 0.87260 0.99793 1.48489 1.49260 1.30797 1.03985 1.16447 0.80471 0.83214 0.80392 1.90748 1.39100 1.28117 1.83170 1.23341 1.02067 0.97079 0.95452 1.22588 1.02218 1.00691 0.91018 1.20793 1.00296 0.94368 0.87939 1.18804 0.99349 0.96092 0.87964 1.21615 1.08799 1.03760 0.93051 1.22547 0.96570 0.92113 0.97520 1.48538 1.38657 1.22093 1.05808 1.21954 1.03084 1.01334 0.77719 1.77672 1.22186 1.20199 0.88757 1.84957 1.54850 1.44573 1.09448 1.74466 1.12796 1.10813 1.02095 0.91632 0.91406 0.92308 0.89910 0.90434 0.77837 0.93413 0.91060 0.89832 0.79809 0.82175 0.80059 0.90319 0.89008 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.05 37.16 0.34 -1.94 16 2 C 0.14 2.16 3.49 -66.95 -0.23 1.93 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -2.24 6.14 -24.90 -0.15 -2.39 16 5 C 0.17 3.41 3.71 -65.78 -0.24 3.17 16 6 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 7 N -0.71 -17.23 5.24 -51.35 -0.27 -17.50 16 8 C -0.25 -6.64 9.96 -15.06 -0.15 -6.79 16 9 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 10 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 11 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 12 Si 0.91 22.09 29.55 -169.99 -5.02 17.06 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 C 0.07 1.31 5.86 -2.53 -0.01 1.30 16 17 N -0.59 -10.26 3.08 -163.94 -0.50 -10.77 16 18 C 0.61 10.80 7.66 -12.10 -0.09 10.70 16 19 O -0.53 -10.14 15.85 5.38 0.09 -10.06 16 20 C -0.02 -0.35 7.00 -82.63 -0.58 -0.93 16 21 C -0.14 -1.98 10.94 -38.73 -0.42 -2.41 16 22 C 0.03 0.41 7.35 -36.19 -0.27 0.14 16 23 C 0.14 1.67 7.11 -82.88 -0.59 1.08 16 24 C -0.24 -2.22 10.77 -39.67 -0.43 -2.65 16 25 C 0.06 0.38 11.46 -17.27 -0.20 0.18 16 26 N -0.37 -2.87 4.01 -68.21 -0.27 -3.15 16 27 C 0.10 0.32 11.46 59.84 0.69 1.01 16 28 N -0.26 -2.99 12.60 33.36 0.42 -2.57 16 29 O 0.14 2.05 11.20 16.06 0.18 2.23 16 30 N -0.30 -5.05 9.28 33.35 0.31 -4.74 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 1.03 6.77 -51.93 -0.35 0.67 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.23 7.83 -51.92 -0.41 0.82 16 35 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 36 H 0.39 9.94 7.76 -40.82 -0.32 9.62 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.08 1.65 6.24 -51.93 -0.32 1.32 16 40 H 0.18 2.34 8.06 -52.48 -0.42 1.91 16 41 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 42 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 43 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 45 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 384.67 15.07 5.80 5.80 Total: -1.00 -33.85 384.67 -7.01 -40.86 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.01 Total: 7.56 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.44 Total: 2.05 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 0.41 Total: -65.50 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.27 Total: -7.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.85 -7.01 -40.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988888387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.704 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds