Wall clock time and date at job start Wed Apr 1 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.00114 * 2 1 4 4 C 1.54331 * 109.87888 * 121.09263 * 2 1 3 5 5 C 1.55149 * 102.94321 * 97.22242 * 4 2 1 6 6 H 1.08993 * 111.00756 * 277.39214 * 5 4 2 7 7 N 1.46504 * 111.00269 * 153.57378 * 5 4 2 8 8 C 1.36943 * 119.99781 * 155.00324 * 7 5 4 9 9 H 1.08002 * 119.99788 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99622 * 180.27904 * 8 7 5 11 11 N 1.31614 * 120.00467 * 359.72375 * 10 8 7 12 12 Si 1.86801 * 119.99700 * 179.72266 * 10 8 7 13 13 H 1.48504 * 109.47306 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47021 * 119.99661 * 12 10 8 15 15 H 1.48501 * 109.47039 * 240.00078 * 12 10 8 16 16 C 1.54914 * 101.58116 * 35.50250 * 5 4 2 17 17 N 1.47014 * 109.88562 * 238.89829 * 2 1 3 18 18 C 1.34781 * 125.65005 * 59.57409 * 17 2 1 19 19 O 1.21488 * 119.99644 * 359.97438 * 18 17 2 20 20 C 1.48344 * 120.00018 * 180.02562 * 18 17 2 21 21 C 1.41892 * 126.84023 * 179.97438 * 20 18 17 22 22 C 1.36732 * 103.81773 * 180.02562 * 21 20 18 23 23 C 1.47850 * 126.81632 * 179.97438 * 22 21 20 24 24 C 1.41046 * 126.06564 * 179.71491 * 23 22 21 25 25 C 1.35010 * 107.84340 * 179.82665 * 24 23 22 26 26 N 1.35088 * 108.03558 * 0.43338 * 25 24 23 27 27 C 1.46492 * 125.91314 * 179.68829 * 26 25 24 28 28 N 1.31816 * 126.06908 * 0.02562 * 23 22 21 29 29 O 1.34458 * 106.36495 * 359.97438 * 22 21 20 30 30 N 1.20877 * 111.73248 * 359.70971 * 29 22 21 31 31 H 1.08999 * 109.47742 * 298.91261 * 1 2 3 32 32 H 1.09004 * 109.46495 * 58.91252 * 1 2 3 33 33 H 1.08999 * 109.47367 * 178.90506 * 1 2 3 34 34 H 1.09007 * 110.71733 * 338.85884 * 4 2 1 35 35 H 1.08999 * 110.71890 * 215.59355 * 4 2 1 36 36 H 0.97000 * 120.00410 * 335.00650 * 7 5 4 37 37 H 0.96995 * 120.00147 * 180.02562 * 11 10 8 38 38 H 1.09004 * 110.36203 * 81.82860 * 16 5 4 39 39 H 1.08995 * 110.36707 * 204.14386 * 16 5 4 40 40 H 1.08004 * 128.09170 * 0.02562 * 21 20 18 41 41 H 1.07996 * 126.07537 * 359.96235 * 24 23 22 42 42 H 1.08001 * 125.98254 * 180.15768 * 25 24 23 43 43 H 1.08999 * 109.47438 * 270.02026 * 27 26 25 44 44 H 1.08997 * 109.47390 * 30.01529 * 27 26 25 45 45 H 1.08999 * 109.47079 * 150.01686 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 1.2428 5 6 2.3517 -2.1695 0.6927 6 1 1.4452 -2.7738 0.6612 7 7 3.3935 -2.8312 1.4820 8 6 3.4566 -4.1985 1.5232 9 1 2.7381 -4.7890 0.9742 10 6 4.4402 -4.8255 2.2758 11 7 5.3155 -4.1058 2.9454 12 14 4.5215 -6.6907 2.3383 13 1 3.4324 -7.2618 1.5059 14 1 5.8349 -7.1466 1.8165 15 1 4.3615 -7.1463 3.7426 16 6 2.8568 -1.8499 -0.7365 17 7 2.0301 -0.7141 -1.1837 18 6 1.7757 -0.3845 -2.4656 19 8 1.0778 0.5772 -2.7185 20 6 2.3469 -1.1968 -3.5677 21 6 2.1741 -0.9833 -4.9598 22 6 2.8938 -1.9926 -5.5368 23 6 3.0581 -2.2486 -6.9836 24 6 3.8098 -3.2925 -7.5621 25 6 3.7050 -3.1836 -8.9037 26 7 2.9292 -2.1120 -9.1769 27 6 2.5659 -1.6323 -10.5126 28 7 2.5329 -1.5384 -7.9620 29 8 3.4225 -2.7060 -4.5271 30 7 3.1167 -2.2513 -3.4496 31 1 -0.3634 0.4968 0.8995 32 1 -0.3632 0.5307 -0.8801 33 1 -0.3634 -1.0274 -0.0196 34 1 1.2916 -0.7889 2.0202 35 1 2.9655 -0.2831 1.6184 36 1 4.0386 -2.3008 1.9755 37 1 6.0030 -4.5440 3.4709 38 1 3.9091 -1.5669 -0.7125 39 1 2.7089 -2.7082 -1.3919 40 1 1.6068 -0.2054 -5.4492 41 1 4.3679 -4.0464 -7.0269 42 1 4.1649 -3.8360 -9.6312 43 1 3.3097 -0.9128 -10.8550 44 1 2.5300 -2.4744 -11.2037 45 1 1.5879 -1.1528 -10.4729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988888387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:07 Heat of formation + Delta-G solvation = 116.703477 kcal Electronic energy + Delta-G solvation = -29440.973227 eV Core-core repulsion = 25270.958225 eV Total energy + Delta-G solvation = -4170.015002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.27506 -42.15155 -41.35139 -38.94331 -36.05072 -35.45256 -35.04821 -33.35428 -32.94247 -32.28157 -31.18019 -30.06349 -27.72667 -26.90582 -26.42591 -25.60403 -24.44970 -23.45032 -22.28831 -21.84257 -21.47247 -19.95525 -19.34118 -19.06480 -18.83488 -18.21922 -17.46722 -17.00548 -16.91167 -16.43357 -16.31271 -15.83829 -15.56218 -15.21473 -15.01066 -14.76117 -14.67046 -14.64351 -14.39117 -13.96680 -13.78365 -13.73856 -13.31534 -13.27147 -13.16958 -13.04071 -12.85766 -12.82797 -12.24054 -12.18401 -12.04261 -11.88673 -11.76615 -11.71641 -11.55947 -11.47746 -11.43984 -10.98162 -10.10281 -9.87699 -9.54250 -9.08200 -7.95841 -5.26148 -0.35385 0.14215 1.01791 1.09081 1.48915 1.49926 1.56905 1.60142 1.83344 1.96015 2.00946 2.54462 2.66443 3.11927 3.34743 3.53261 3.58463 3.69911 3.80180 3.87105 3.96099 4.05972 4.09084 4.16426 4.28450 4.41453 4.45576 4.48214 4.60772 4.63112 4.67443 4.74348 4.78331 4.81767 4.87530 4.90676 4.97560 5.10026 5.20364 5.25671 5.34652 5.39036 5.52507 6.03406 6.20600 6.25469 6.41454 6.67609 6.90389 7.32867 8.02129 8.27663 9.27055 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010532 B = 0.002724 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.815699 B =10276.376324 C =12635.584542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.137 3.863 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.169 3.831 6 H 0.066 0.934 7 N -0.720 5.720 8 C -0.243 4.243 9 H 0.076 0.924 10 C -0.069 4.069 11 N -0.965 5.965 12 Si 0.970 3.030 13 H -0.267 1.267 14 H -0.294 1.294 15 H -0.292 1.292 16 C 0.087 3.913 17 N -0.593 5.593 18 C 0.608 3.392 19 O -0.549 6.549 20 C -0.038 4.038 21 C -0.149 4.149 22 C 0.048 3.952 23 C 0.112 3.888 24 C -0.264 4.264 25 C 0.078 3.922 26 N -0.361 5.361 27 C 0.089 3.911 28 N -0.295 5.295 29 O 0.145 5.855 30 N -0.329 5.329 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.378 0.622 37 H 0.252 0.748 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.194 0.806 41 H 0.169 0.831 42 H 0.231 0.769 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 4.918 -27.245 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.035 3.965 3 H 0.101 0.899 4 C -0.163 4.163 5 C 0.058 3.942 6 H 0.084 0.916 7 N -0.359 5.359 8 C -0.375 4.375 9 H 0.094 0.906 10 C -0.261 4.261 11 N -0.615 5.615 12 Si 0.799 3.201 13 H -0.191 1.191 14 H -0.221 1.221 15 H -0.220 1.220 16 C -0.039 4.039 17 N -0.326 5.326 18 C 0.395 3.605 19 O -0.426 6.426 20 C -0.194 4.194 21 C -0.173 4.173 22 C -0.017 4.017 23 C -0.050 4.050 24 C -0.293 4.293 25 C -0.068 4.068 26 N -0.145 5.145 27 C -0.051 4.051 28 N -0.123 5.123 29 O 0.065 5.935 30 N -0.026 5.026 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.211 0.789 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.211 0.789 41 H 0.186 0.814 42 H 0.247 0.753 43 H 0.110 0.890 44 H 0.146 0.854 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.758 5.692 -26.774 28.194 hybrid contribution 0.824 -0.905 0.232 1.246 sum -5.934 4.786 -26.541 27.614 Atomic orbital electron populations 1.22093 0.93249 1.02389 1.03456 1.21747 0.95729 0.96046 0.83009 0.89855 1.22967 1.02469 0.94559 0.96314 1.21419 0.91489 0.92872 0.88429 0.91573 1.42412 1.34234 1.03404 1.55826 1.19620 1.10659 0.83844 1.23354 0.90637 1.25521 0.98202 1.02108 1.00308 1.69805 1.19972 1.35530 1.36215 0.85130 0.77344 0.80567 0.77055 1.19119 1.22092 1.21951 1.23333 0.93984 0.87513 0.99058 1.48503 1.49070 1.30442 1.04562 1.16603 0.80191 0.83116 0.80624 1.90729 1.39777 1.28745 1.83391 1.23332 1.02706 0.97379 0.96023 1.22671 1.03071 1.01525 0.90063 1.21101 0.98651 0.93216 0.88687 1.18838 1.01322 0.97842 0.87019 1.21896 1.09319 1.03729 0.94403 1.23251 0.94718 0.91370 0.97437 1.48987 1.37672 1.21826 1.06049 1.22386 1.03355 1.03276 0.76034 1.77584 1.23292 1.21369 0.90070 1.84909 1.54636 1.44477 1.09433 1.74441 1.13687 1.11400 1.03121 0.88862 0.92517 0.92787 0.87998 0.90493 0.78905 0.93914 0.92726 0.90835 0.78898 0.81380 0.75283 0.88982 0.85431 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 9.05 71.98 0.65 -3.43 16 2 C 0.14 4.11 3.49 45.34 0.16 4.27 16 3 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 4 C -0.12 -3.90 6.14 31.78 0.20 -3.70 16 5 C 0.17 6.62 3.71 46.38 0.17 6.79 16 6 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 7 N -0.72 -35.33 5.24 -316.38 -1.66 -36.99 16 8 C -0.24 -13.23 9.96 84.03 0.84 -12.39 16 9 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 10 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 11 N -0.97 -58.02 13.06 21.65 0.28 -57.74 16 12 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 16 C 0.09 3.34 5.86 86.86 0.51 3.85 16 17 N -0.59 -20.65 3.08 -790.87 -2.44 -23.08 16 18 C 0.61 21.87 7.66 86.93 0.67 22.54 16 19 O -0.55 -20.91 15.85 -3.68 -0.06 -20.97 16 20 C -0.04 -1.27 7.00 42.85 0.30 -0.97 16 21 C -0.15 -4.31 10.94 22.82 0.25 -4.06 16 22 C 0.05 1.31 7.35 24.46 0.18 1.49 16 23 C 0.11 2.59 7.11 42.38 0.30 2.89 16 24 C -0.26 -4.44 10.77 22.22 0.24 -4.20 16 25 C 0.08 0.78 11.46 83.45 0.96 1.74 16 26 N -0.36 -4.76 4.01 -369.73 -1.48 -6.24 16 27 C 0.09 0.30 11.46 127.77 1.46 1.76 16 28 N -0.29 -6.52 12.60 -48.36 -0.61 -7.12 16 29 O 0.14 4.34 11.20 67.66 0.76 5.09 16 30 N -0.33 -11.30 9.28 -48.99 -0.45 -11.76 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.65 6.77 -2.38 -0.02 1.63 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.10 2.82 7.83 -2.38 -0.02 2.80 16 35 H 0.08 2.44 8.00 -2.39 -0.02 2.43 16 36 H 0.38 19.79 7.76 -92.71 -0.72 19.07 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 39 H 0.07 2.98 6.24 -2.39 -0.01 2.97 16 40 H 0.19 5.06 8.06 -2.91 -0.02 5.03 16 41 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 42 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 43 H 0.09 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.13 -0.45 8.14 -2.39 -0.02 -0.47 16 45 H 0.09 0.38 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -74.66 384.67 4.03 -70.63 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: 0.31 Total: 27.28 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 7.35 Total: 13.17 kcal Atomic # 7 Polarization: -136.57 SS G_CDS: -6.36 Total: -142.93 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.70 Total: -15.87 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -74.66 4.03 -70.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988888387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.333 kcal (2) G-P(sol) polarization free energy of solvation -74.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds