Wall clock time and date at job start Wed Apr 1 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87661 * 2 1 4 4 C 1.54324 * 109.88074 * 121.00923 * 2 1 3 5 5 C 1.55158 * 102.94376 * 141.76382 * 4 2 1 6 6 H 1.09005 * 111.00623 * 82.57443 * 5 4 2 7 7 N 1.46504 * 111.00839 * 206.42708 * 5 4 2 8 8 C 1.36932 * 119.99874 * 205.00307 * 7 5 4 9 9 H 1.07997 * 120.00613 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99714 * 179.97438 * 8 7 5 11 11 N 1.31625 * 120.00156 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00170 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46974 * 90.00089 * 12 10 8 14 14 H 1.48504 * 109.47307 * 209.99864 * 12 10 8 15 15 H 1.48493 * 109.47004 * 330.00100 * 12 10 8 16 16 C 1.54909 * 101.58422 * 324.50122 * 5 4 2 17 17 N 1.47023 * 110.01530 * 238.89436 * 2 1 3 18 18 C 1.34778 * 125.64505 * 61.54869 * 17 2 1 19 19 O 1.21667 * 120.00078 * 358.90417 * 18 17 2 20 20 C 1.46900 * 120.00074 * 178.89676 * 18 17 2 21 21 C 1.36387 * 126.76049 * 8.48803 * 20 18 17 22 22 N 1.35451 * 109.77091 * 179.86118 * 21 20 18 23 23 C 1.46501 * 124.79089 * 180.14273 * 22 21 20 24 24 C 1.38051 * 110.41725 * 0.41504 * 22 21 20 25 25 C 1.39106 * 133.15637 * 179.75343 * 24 22 21 26 26 C 1.37759 * 119.96522 * 179.97438 * 25 24 22 27 27 C 1.38945 * 120.60885 * 0.02562 * 26 25 24 28 28 F 1.35089 * 119.87725 * 179.97438 * 27 26 25 29 29 C 1.37951 * 120.24819 * 359.97438 * 27 26 25 30 30 C 1.39292 * 119.64926 * 0.03610 * 29 27 26 31 31 H 1.08997 * 109.46999 * 299.30477 * 1 2 3 32 32 H 1.09000 * 109.46359 * 59.30482 * 1 2 3 33 33 H 1.08995 * 109.47076 * 179.30175 * 1 2 3 34 34 H 1.09001 * 110.72382 * 260.12662 * 4 2 1 35 35 H 1.09000 * 110.72192 * 23.22796 * 4 2 1 36 36 H 0.96998 * 119.99343 * 24.99550 * 7 5 4 37 37 H 0.96998 * 119.99999 * 180.02562 * 11 10 8 38 38 H 1.08995 * 110.37258 * 155.84050 * 16 5 4 39 39 H 1.09003 * 110.36738 * 278.06060 * 16 5 4 40 40 H 1.08005 * 125.11612 * 0.02562 * 21 20 18 41 41 H 1.08996 * 109.47826 * 270.30600 * 23 22 21 42 42 H 1.09004 * 109.46932 * 30.30760 * 23 22 21 43 43 H 1.08997 * 109.47139 * 150.30627 * 23 22 21 44 44 H 1.08004 * 120.02121 * 0.02562 * 25 24 22 45 45 H 1.08000 * 119.69237 * 180.02562 * 26 25 24 46 46 H 1.07997 * 120.18055 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 1.2439 5 6 3.2899 -1.5101 0.6957 6 1 4.1665 -0.8628 0.6644 7 7 3.5570 -2.7144 1.4859 8 6 4.8214 -3.2385 1.5291 9 1 5.6216 -2.7644 0.9803 10 6 5.0745 -4.3793 2.2783 11 7 6.2897 -4.8835 2.3194 12 14 3.6906 -5.1992 3.2281 13 1 3.0313 -6.2128 2.3661 14 1 4.2442 -5.8617 4.4364 15 1 2.6963 -4.1748 3.6370 16 6 2.8196 -1.8771 -0.7340 17 7 2.0332 -0.7137 -1.1828 18 6 1.8117 -0.3627 -2.4651 19 8 1.1273 0.6104 -2.7200 20 6 2.3969 -1.1549 -3.5550 21 6 3.0441 -2.3499 -3.4391 22 7 3.4407 -2.7766 -4.6620 23 6 4.1629 -4.0252 -4.9179 24 6 3.0737 -1.8657 -5.6323 25 6 3.2421 -1.8262 -7.0126 26 6 2.7546 -0.7593 -7.7349 27 6 2.0936 0.2836 -7.0978 28 9 1.6219 1.3228 -7.8206 29 6 1.9172 0.2618 -5.7297 30 6 2.4061 -0.8118 -4.9889 31 1 -0.3633 0.5030 0.8961 32 1 -0.3632 0.5246 -0.8837 33 1 -0.3633 -1.0275 -0.0125 34 1 2.3503 -0.0431 2.0212 35 1 1.3049 -1.4432 1.6206 36 1 2.8382 -3.1404 1.9786 37 1 6.4665 -5.6809 2.8426 38 1 3.6779 -2.0299 -1.3882 39 1 2.1972 -2.7716 -0.7106 40 1 3.2124 -2.8779 -2.5121 41 1 5.2359 -3.8433 -4.8580 42 1 3.8783 -4.7687 -4.1733 43 1 3.9117 -4.3928 -5.9128 44 1 3.7540 -2.6319 -7.5178 45 1 2.8874 -0.7334 -8.8064 46 1 1.4036 1.0731 -5.2355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988966902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:39 Heat of formation + Delta-G solvation = 14.306714 kcal Electronic energy + Delta-G solvation = -30223.993717 eV Core-core repulsion = 26029.618496 eV Total energy + Delta-G solvation = -4194.375221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.85002 -41.72274 -39.73816 -37.32034 -37.04523 -34.39124 -33.33480 -31.76139 -31.58504 -30.26367 -29.05520 -28.93884 -26.81259 -25.77539 -23.97438 -23.17038 -22.86032 -21.51113 -20.66395 -20.47554 -19.04326 -17.86432 -17.49388 -17.23389 -16.78833 -16.23696 -15.82146 -15.64167 -15.36127 -15.16530 -14.88400 -14.52526 -14.13516 -14.05055 -13.84333 -13.42619 -13.31864 -13.22754 -12.99688 -12.91771 -12.76661 -12.54510 -12.52942 -12.39907 -12.26504 -11.80678 -11.43914 -11.25600 -11.21847 -11.11631 -10.82680 -10.70684 -10.44199 -10.15518 -9.84037 -9.75873 -9.66536 -9.13535 -8.42989 -8.37858 -7.84209 -7.49749 -5.94842 -3.33362 0.73926 1.19497 1.91803 2.46920 3.16551 3.24856 3.27960 3.33578 3.34717 3.74975 4.15203 4.35253 4.41279 4.42821 4.59171 4.68236 4.80081 4.94038 4.95814 5.03201 5.10371 5.13478 5.22986 5.26452 5.35393 5.40830 5.45056 5.51085 5.55204 5.65513 5.70964 5.76032 5.88780 5.89611 5.98483 6.02160 6.06831 6.23860 6.27900 6.36004 6.41051 6.51043 6.62935 6.66754 6.88279 6.93874 7.77515 7.80619 8.23729 8.46800 9.00401 9.72582 9.90843 11.22524 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003140 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.888129 B = 8916.222933 C =10626.876866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.141 3.859 3 H 0.074 0.926 4 C -0.141 4.141 5 C 0.178 3.822 6 H 0.078 0.922 7 N -0.736 5.736 8 C -0.256 4.256 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.275 1.275 16 C 0.061 3.939 17 N -0.608 5.608 18 C 0.605 3.395 19 O -0.551 6.551 20 C -0.227 4.227 21 C 0.109 3.891 22 N -0.470 5.470 23 C 0.070 3.930 24 C 0.075 3.925 25 C -0.094 4.094 26 C -0.136 4.136 27 C 0.072 3.928 28 F -0.142 7.142 29 C -0.097 4.097 30 C -0.036 4.036 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.365 0.635 37 H 0.262 0.738 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.200 0.800 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.441 4.097 -15.645 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.096 0.904 7 N -0.377 5.377 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.575 5.575 12 Si 0.713 3.287 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.201 1.201 16 C -0.065 4.065 17 N -0.341 5.341 18 C 0.396 3.604 19 O -0.430 6.430 20 C -0.237 4.237 21 C -0.023 4.023 22 N -0.150 5.150 23 C -0.071 4.071 24 C -0.030 4.030 25 C -0.114 4.114 26 C -0.156 4.156 27 C 0.052 3.948 28 F -0.121 7.121 29 C -0.117 4.117 30 C -0.041 4.041 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.198 0.802 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.216 0.784 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.148 0.852 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.377 4.292 -15.939 18.080 hybrid contribution -0.839 -0.778 0.634 1.308 sum -8.216 3.514 -15.304 17.722 Atomic orbital electron populations 1.22133 0.95097 1.02109 1.02548 1.21468 0.94251 0.96210 0.84267 0.90765 1.23084 0.98860 0.99843 0.96191 1.21268 0.95272 0.88761 0.88099 0.90400 1.42679 1.09100 1.29383 1.56526 1.19072 0.85816 1.07432 1.26189 0.88969 1.24684 0.96093 0.98042 0.99759 1.69697 1.18924 1.24071 1.44761 0.86589 0.82266 0.79669 0.80216 1.20987 1.21608 1.20128 1.23736 0.94675 0.88197 0.99906 1.48360 1.52289 1.29044 1.04448 1.16770 0.79783 0.83475 0.80388 1.90727 1.40391 1.28577 1.83343 1.19904 1.12906 0.98653 0.92247 1.23347 0.94430 0.95411 0.89063 1.43748 1.47473 1.18564 1.05266 1.22150 0.97319 0.83706 1.03896 1.18296 1.02455 0.91395 0.90815 1.19792 1.02683 0.99329 0.89623 1.20718 1.00854 0.93564 1.00466 1.17341 1.01446 0.86815 0.89225 1.91475 1.86776 1.56262 1.77608 1.20550 1.00653 0.99122 0.91325 1.18409 0.99962 0.94102 0.91614 0.91966 0.91317 0.92704 0.90013 0.90638 0.80186 0.92837 0.90246 0.91213 0.78419 0.90301 0.88920 0.89738 0.85162 0.84451 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.11 37.16 0.34 -1.75 16 2 C 0.14 1.97 3.46 -66.95 -0.23 1.74 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -1.96 6.12 -24.90 -0.15 -2.11 16 5 C 0.18 2.96 3.71 -65.78 -0.24 2.72 16 6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.74 -15.13 5.05 -51.35 -0.26 -15.39 16 8 C -0.26 -6.42 10.44 -15.06 -0.16 -6.58 16 9 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 10 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.03 13.97 55.49 0.78 -26.26 16 12 Si 0.88 20.24 27.73 -169.99 -4.71 15.53 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.28 -5.92 6.52 56.52 0.37 -5.55 16 16 C 0.06 0.90 4.95 -2.53 -0.01 0.89 16 17 N -0.61 -9.14 3.07 -164.46 -0.50 -9.64 16 18 C 0.60 9.99 7.63 -12.75 -0.10 9.89 16 19 O -0.55 -10.37 15.23 5.22 0.08 -10.29 16 20 C -0.23 -3.39 6.22 -103.31 -0.64 -4.03 16 21 C 0.11 1.37 9.63 -16.62 -0.16 1.21 16 22 N -0.47 -5.17 3.15 -121.58 -0.38 -5.55 16 23 C 0.07 0.50 10.99 59.85 0.66 1.16 16 24 C 0.07 0.91 6.79 -83.94 -0.57 0.34 16 25 C -0.09 -0.92 9.91 -39.43 -0.39 -1.31 16 26 C -0.14 -1.39 9.99 -39.49 -0.39 -1.78 16 27 C 0.07 0.91 7.29 -39.42 -0.29 0.62 16 28 F -0.14 -1.84 17.26 2.25 0.04 -1.81 16 29 C -0.10 -1.38 9.84 -39.29 -0.39 -1.77 16 30 C -0.04 -0.52 6.27 -104.95 -0.66 -1.18 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.01 6.86 -51.93 -0.36 0.65 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 36 H 0.36 7.42 5.63 -40.82 -0.23 7.19 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.08 1.14 5.35 -51.93 -0.28 0.87 16 39 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 40 H 0.20 2.30 4.63 -52.48 -0.24 2.06 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.08 0.43 8.03 -51.93 -0.42 0.02 16 44 H 0.13 0.88 8.01 -52.48 -0.42 0.46 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.14 2.18 7.49 -52.49 -0.39 1.78 16 LS Contribution 377.12 15.07 5.68 5.68 Total: -1.00 -31.76 377.12 -8.89 -40.65 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.12 Total: 8.84 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.48 Total: -1.77 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.37 Total: -56.84 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.71 Total: 15.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.76 -8.89 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988966902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.955 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds