Wall clock time and date at job start Wed Apr 1 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87661 * 2 1 4 4 C 1.54324 * 109.88074 * 121.00923 * 2 1 3 5 5 C 1.55158 * 102.94376 * 141.76382 * 4 2 1 6 6 H 1.09005 * 111.00623 * 82.57443 * 5 4 2 7 7 N 1.46504 * 111.00839 * 206.42708 * 5 4 2 8 8 C 1.36932 * 119.99874 * 205.00307 * 7 5 4 9 9 H 1.07997 * 120.00613 * 359.97438 * 8 7 5 10 10 C 1.38810 * 119.99714 * 179.97438 * 8 7 5 11 11 N 1.31625 * 120.00156 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00170 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46974 * 90.00089 * 12 10 8 14 14 H 1.48504 * 109.47307 * 209.99864 * 12 10 8 15 15 H 1.48493 * 109.47004 * 330.00100 * 12 10 8 16 16 C 1.54909 * 101.58422 * 324.50122 * 5 4 2 17 17 N 1.47023 * 110.01530 * 238.89436 * 2 1 3 18 18 C 1.34778 * 125.64505 * 61.54869 * 17 2 1 19 19 O 1.21667 * 120.00078 * 358.90417 * 18 17 2 20 20 C 1.46900 * 120.00074 * 178.89676 * 18 17 2 21 21 C 1.36387 * 126.76049 * 8.48803 * 20 18 17 22 22 N 1.35451 * 109.77091 * 179.86118 * 21 20 18 23 23 C 1.46501 * 124.79089 * 180.14273 * 22 21 20 24 24 C 1.38051 * 110.41725 * 0.41504 * 22 21 20 25 25 C 1.39106 * 133.15637 * 179.75343 * 24 22 21 26 26 C 1.37759 * 119.96522 * 179.97438 * 25 24 22 27 27 C 1.38945 * 120.60885 * 0.02562 * 26 25 24 28 28 F 1.35089 * 119.87725 * 179.97438 * 27 26 25 29 29 C 1.37951 * 120.24819 * 359.97438 * 27 26 25 30 30 C 1.39292 * 119.64926 * 0.03610 * 29 27 26 31 31 H 1.08997 * 109.46999 * 299.30477 * 1 2 3 32 32 H 1.09000 * 109.46359 * 59.30482 * 1 2 3 33 33 H 1.08995 * 109.47076 * 179.30175 * 1 2 3 34 34 H 1.09001 * 110.72382 * 260.12662 * 4 2 1 35 35 H 1.09000 * 110.72192 * 23.22796 * 4 2 1 36 36 H 0.96998 * 119.99343 * 24.99550 * 7 5 4 37 37 H 0.96998 * 119.99999 * 180.02562 * 11 10 8 38 38 H 1.08995 * 110.37258 * 155.84050 * 16 5 4 39 39 H 1.09003 * 110.36738 * 278.06060 * 16 5 4 40 40 H 1.08005 * 125.11612 * 0.02562 * 21 20 18 41 41 H 1.08996 * 109.47826 * 270.30600 * 23 22 21 42 42 H 1.09004 * 109.46932 * 30.30760 * 23 22 21 43 43 H 1.08997 * 109.47139 * 150.30627 * 23 22 21 44 44 H 1.08004 * 120.02121 * 0.02562 * 25 24 22 45 45 H 1.08000 * 119.69237 * 180.02562 * 26 25 24 46 46 H 1.07997 * 120.18055 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 1.2439 5 6 3.2899 -1.5101 0.6957 6 1 4.1665 -0.8628 0.6644 7 7 3.5570 -2.7144 1.4859 8 6 4.8214 -3.2385 1.5291 9 1 5.6216 -2.7644 0.9803 10 6 5.0745 -4.3793 2.2783 11 7 6.2897 -4.8835 2.3194 12 14 3.6906 -5.1992 3.2281 13 1 3.0313 -6.2128 2.3661 14 1 4.2442 -5.8617 4.4364 15 1 2.6963 -4.1748 3.6370 16 6 2.8196 -1.8771 -0.7340 17 7 2.0332 -0.7137 -1.1828 18 6 1.8117 -0.3627 -2.4651 19 8 1.1273 0.6104 -2.7200 20 6 2.3969 -1.1549 -3.5550 21 6 3.0441 -2.3499 -3.4391 22 7 3.4407 -2.7766 -4.6620 23 6 4.1629 -4.0252 -4.9179 24 6 3.0737 -1.8657 -5.6323 25 6 3.2421 -1.8262 -7.0126 26 6 2.7546 -0.7593 -7.7349 27 6 2.0936 0.2836 -7.0978 28 9 1.6219 1.3228 -7.8206 29 6 1.9172 0.2618 -5.7297 30 6 2.4061 -0.8118 -4.9889 31 1 -0.3633 0.5030 0.8961 32 1 -0.3632 0.5246 -0.8837 33 1 -0.3633 -1.0275 -0.0125 34 1 2.3503 -0.0431 2.0212 35 1 1.3049 -1.4432 1.6206 36 1 2.8382 -3.1404 1.9786 37 1 6.4665 -5.6809 2.8426 38 1 3.6779 -2.0299 -1.3882 39 1 2.1972 -2.7716 -0.7106 40 1 3.2124 -2.8779 -2.5121 41 1 5.2359 -3.8433 -4.8580 42 1 3.8783 -4.7687 -4.1733 43 1 3.9117 -4.3928 -5.9128 44 1 3.7540 -2.6319 -7.5178 45 1 2.8874 -0.7334 -8.8064 46 1 1.4036 1.0731 -5.2355 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988966902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:37 Heat of formation + Delta-G solvation = -3.948943 kcal Electronic energy + Delta-G solvation = -30224.785341 eV Core-core repulsion = 26029.618496 eV Total energy + Delta-G solvation = -4195.166846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -49.85424 -42.67201 -40.95277 -38.64868 -37.94741 -36.05993 -34.29617 -33.48397 -32.76148 -31.13370 -30.49618 -29.96963 -27.65398 -26.92028 -25.60557 -24.12525 -24.09020 -22.53818 -21.86723 -21.71188 -20.20904 -19.62520 -18.52242 -18.25893 -17.82060 -17.42277 -16.83833 -16.76085 -16.34090 -16.23489 -16.10242 -15.99291 -15.45075 -15.25200 -14.96943 -14.82726 -14.43180 -14.34107 -14.16734 -13.86943 -13.83198 -13.69646 -13.56034 -13.48935 -13.21131 -13.10592 -12.93282 -12.82309 -12.22966 -12.17017 -12.09483 -12.05190 -11.85934 -11.78085 -11.49608 -11.04085 -10.86066 -10.79139 -9.70266 -9.33742 -9.30208 -8.79005 -7.98523 -5.34167 -0.21317 0.26557 0.87415 1.45007 1.46474 1.54048 1.62168 2.00053 2.27316 2.52515 2.69413 3.20012 3.30418 3.35136 3.51239 3.60518 3.72384 3.79477 3.88895 3.95062 4.09437 4.10972 4.24987 4.29790 4.37887 4.43119 4.45988 4.46647 4.49626 4.63075 4.70683 4.75073 4.75830 4.84172 4.90849 5.06907 5.09685 5.12402 5.15558 5.24439 5.35950 5.38679 5.53078 5.57047 5.81372 5.94942 6.10108 6.24403 6.54948 7.09801 7.22860 7.83344 8.03404 9.21995 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.003140 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.888129 B = 8916.222933 C =10626.876866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.138 3.862 3 H 0.071 0.929 4 C -0.126 4.126 5 C 0.170 3.830 6 H 0.065 0.935 7 N -0.735 5.735 8 C -0.231 4.231 9 H 0.063 0.937 10 C -0.055 4.055 11 N -0.980 5.980 12 Si 0.947 3.053 13 H -0.277 1.277 14 H -0.304 1.304 15 H -0.249 1.249 16 C 0.072 3.928 17 N -0.607 5.607 18 C 0.600 3.400 19 O -0.585 6.585 20 C -0.264 4.264 21 C 0.123 3.877 22 N -0.462 5.462 23 C 0.060 3.940 24 C 0.068 3.932 25 C -0.076 4.076 26 C -0.130 4.130 27 C 0.067 3.933 28 F -0.148 7.148 29 C -0.126 4.126 30 C -0.064 4.064 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.370 0.630 37 H 0.257 0.743 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.207 0.793 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.236 2.606 -16.770 18.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 H 0.089 0.911 4 C -0.165 4.165 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.377 5.377 8 C -0.362 4.362 9 H 0.081 0.919 10 C -0.247 4.247 11 N -0.630 5.630 12 Si 0.775 3.225 13 H -0.203 1.203 14 H -0.231 1.231 15 H -0.173 1.173 16 C -0.053 4.053 17 N -0.339 5.339 18 C 0.392 3.608 19 O -0.467 6.467 20 C -0.275 4.275 21 C -0.011 4.011 22 N -0.141 5.141 23 C -0.079 4.079 24 C -0.037 4.037 25 C -0.096 4.096 26 C -0.150 4.150 27 C 0.047 3.953 28 F -0.127 7.127 29 C -0.146 4.146 30 C -0.069 4.069 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.223 0.777 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.191 0.809 45 H 0.189 0.811 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.207 2.828 -17.093 19.170 hybrid contribution -0.528 -0.237 0.866 1.041 sum -8.734 2.591 -16.227 18.609 Atomic orbital electron populations 1.22050 0.94095 1.02207 1.02658 1.21580 0.95055 0.96034 0.83883 0.91115 1.23001 0.97445 0.99820 0.96247 1.21374 0.96237 0.87520 0.88866 0.91668 1.42569 1.07490 1.30384 1.57277 1.19003 0.86827 1.06381 1.23956 0.91922 1.25413 0.98358 0.99282 1.01694 1.69871 1.21498 1.24963 1.46698 0.85530 0.79720 0.79089 0.78149 1.20261 1.23145 1.17314 1.23527 0.94944 0.88349 0.98528 1.48364 1.52052 1.29032 1.04461 1.17087 0.79418 0.83248 0.81034 1.90697 1.42053 1.30141 1.83843 1.19916 1.15221 1.00038 0.92286 1.23353 0.93269 0.94454 0.90062 1.44003 1.46527 1.19250 1.04338 1.22519 0.97431 0.82065 1.05871 1.18559 1.02288 0.90917 0.91911 1.20265 1.01050 0.99834 0.88433 1.21090 0.99437 0.92367 1.02097 1.17577 1.01662 0.87422 0.88679 1.91455 1.86944 1.56769 1.77527 1.20453 1.02462 0.99255 0.92407 1.18623 1.01193 0.95214 0.91832 0.89623 0.93468 0.92480 0.88647 0.89470 0.79575 0.93399 0.89985 0.90324 0.77655 0.89383 0.88009 0.86987 0.80905 0.81073 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.11 71.98 0.66 -3.14 16 2 C 0.14 3.72 3.46 45.34 0.16 3.88 16 3 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.13 -3.26 6.12 31.78 0.19 -3.06 16 5 C 0.17 5.47 3.71 46.38 0.17 5.64 16 6 H 0.07 2.28 8.09 -2.38 -0.02 2.26 16 7 N -0.73 -29.02 5.05 -316.37 -1.60 -30.62 16 8 C -0.23 -11.56 10.44 84.03 0.88 -10.68 16 9 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 10 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 11 N -0.98 -58.17 13.97 21.65 0.30 -57.87 16 12 Si 0.95 41.02 27.73 68.60 1.90 42.92 16 13 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 14 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.25 -9.55 6.52 99.48 0.65 -8.90 16 16 C 0.07 2.06 4.95 86.85 0.43 2.49 16 17 N -0.61 -18.19 3.07 -792.47 -2.43 -20.62 16 18 C 0.60 20.52 7.63 86.51 0.66 21.18 16 19 O -0.59 -23.36 15.23 -4.24 -0.06 -23.43 16 20 C -0.26 -8.08 6.22 -19.02 -0.12 -8.20 16 21 C 0.12 2.98 9.63 83.70 0.81 3.79 16 22 N -0.46 -9.17 3.15 -538.57 -1.69 -10.87 16 23 C 0.06 0.65 10.99 127.77 1.40 2.05 16 24 C 0.07 1.53 6.79 38.89 0.26 1.79 16 25 C -0.08 -1.22 9.91 22.36 0.22 -1.00 16 26 C -0.13 -2.29 9.99 22.33 0.22 -2.07 16 27 C 0.07 1.66 7.29 22.37 0.16 1.83 16 28 F -0.15 -3.86 17.26 44.97 0.78 -3.08 16 29 C -0.13 -3.80 9.84 22.46 0.22 -3.58 16 30 C -0.06 -1.89 6.27 -20.08 -0.13 -2.02 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.40 6.86 -2.39 -0.02 1.38 16 33 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.09 2.10 7.72 -2.39 -0.02 2.08 16 36 H 0.37 13.98 5.63 -92.71 -0.52 13.46 16 37 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 38 H 0.08 2.32 5.35 -2.39 -0.01 2.30 16 39 H 0.08 2.16 8.01 -2.39 -0.02 2.14 16 40 H 0.21 4.54 4.63 -2.91 -0.01 4.53 16 41 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.10 0.95 8.13 -2.39 -0.02 0.93 16 43 H 0.11 0.62 8.03 -2.39 -0.02 0.60 16 44 H 0.17 1.31 8.01 -2.91 -0.02 1.28 16 45 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 46 H 0.12 4.04 7.49 -2.91 -0.02 4.02 16 Total: -1.00 -72.18 377.12 4.31 -67.88 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.44 Total: 29.28 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 6.67 Total: 6.42 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -5.42 Total: -119.98 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.06 Total: -23.43 kcal Atomic # 9 Polarization: -3.86 SS G_CDS: 0.78 Total: -3.08 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.90 Total: 42.92 kcal Total: -72.18 4.31 -67.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988966902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.928 kcal (2) G-P(sol) polarization free energy of solvation -72.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds