Wall clock time and date at job start Wed Apr 1 2020 05:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.00072 * 2 1 4 4 C 1.54340 * 109.98862 * 238.96427 * 2 1 3 5 5 C 1.55157 * 103.01998 * 218.66314 * 4 2 1 6 6 H 1.08996 * 111.00403 * 277.23327 * 5 4 2 7 7 N 1.46504 * 111.00336 * 153.38067 * 5 4 2 8 8 C 1.36936 * 120.00098 * 161.35054 * 7 5 4 9 9 H 1.08002 * 119.99966 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00144 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99857 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00029 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47461 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47610 * 119.99764 * 12 10 8 15 15 H 1.48509 * 109.47047 * 239.99761 * 12 10 8 16 16 C 1.54912 * 101.58272 * 35.31039 * 5 4 2 17 17 N 1.47017 * 109.88589 * 121.09794 * 2 1 3 18 18 C 1.34772 * 125.64988 * 298.39823 * 17 2 1 19 19 O 1.21676 * 120.00184 * 0.79492 * 18 17 2 20 20 C 1.46908 * 120.00223 * 180.80548 * 18 17 2 21 21 C 1.36378 * 126.76189 * 351.52390 * 20 18 17 22 22 N 1.35452 * 109.77318 * 180.02562 * 21 20 18 23 23 C 1.46500 * 124.79317 * 180.02562 * 22 21 20 24 24 C 1.38051 * 110.41290 * 0.02562 * 22 21 20 25 25 C 1.39118 * 133.15758 * 179.97438 * 24 22 21 26 26 C 1.37756 * 119.96391 * 179.70903 * 25 24 22 27 27 C 1.38950 * 120.60916 * 0.59221 * 26 25 24 28 28 F 1.35097 * 119.87619 * 179.70232 * 27 26 25 29 29 C 1.37950 * 120.24345 * 359.42333 * 27 26 25 30 30 C 1.39286 * 119.65114 * 0.27529 * 29 27 26 31 31 H 1.09002 * 109.46878 * 300.35476 * 1 2 3 32 32 H 1.08996 * 109.47399 * 60.35105 * 1 2 3 33 33 H 1.09002 * 109.47366 * 180.36031 * 1 2 3 34 34 H 1.09005 * 110.84752 * 100.19815 * 4 2 1 35 35 H 1.09000 * 110.66632 * 337.04588 * 4 2 1 36 36 H 0.97003 * 119.99775 * 341.35010 * 7 5 4 37 37 H 0.97000 * 120.00148 * 180.02562 * 11 10 8 38 38 H 1.08997 * 110.36822 * 204.15526 * 16 5 4 39 39 H 1.08993 * 110.36622 * 81.82354 * 16 5 4 40 40 H 1.08001 * 125.11308 * 0.07694 * 21 20 18 41 41 H 1.09006 * 109.46877 * 270.00287 * 23 22 21 42 42 H 1.08993 * 109.47259 * 30.00141 * 23 22 21 43 43 H 1.08999 * 109.47293 * 150.00353 * 23 22 21 44 44 H 1.08006 * 120.01659 * 0.02562 * 25 24 22 45 45 H 1.07997 * 119.69673 * 180.31729 * 26 25 24 46 46 H 1.07997 * 120.17048 * 180.25093 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 6 3.2863 -1.5183 -0.6916 6 1 4.1668 -0.8769 -0.6581 7 7 3.5474 -2.7242 -1.4815 8 6 4.7733 -3.3313 -1.4194 9 1 5.5475 -2.9214 -0.7877 10 6 5.0209 -4.4736 -2.1682 11 7 4.0772 -4.9735 -2.9376 12 14 6.6929 -5.3021 -2.0829 13 1 7.5714 -4.5495 -1.1517 14 1 6.5309 -6.6950 -1.5942 15 1 7.3060 -5.3201 -3.4354 16 6 2.8099 -1.8826 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1289 0.6156 2.7191 20 6 2.3841 -1.1589 3.5569 21 6 3.0235 -2.3580 3.4423 22 7 3.4159 -2.7869 4.6657 23 6 4.1327 -4.0384 4.9226 24 6 3.0450 -1.8779 5.6363 25 6 3.2042 -1.8431 7.0180 26 6 2.7206 -0.7739 7.7395 27 6 2.0616 0.2700 7.1017 28 9 1.5880 1.3084 7.8246 29 6 1.8941 0.2526 5.7325 30 6 2.3843 -0.8204 4.9919 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 2.3596 -0.0449 -2.0192 35 1 1.3065 -1.4405 -1.6226 36 1 2.8519 -3.0927 -2.0485 37 1 4.2501 -5.7719 -3.4606 38 1 3.6655 -2.0413 1.3931 39 1 2.1801 -2.7718 0.7113 40 1 3.1924 -2.8859 2.5153 41 1 3.4143 -4.8383 5.1022 42 1 4.7472 -4.2893 4.0581 43 1 4.7699 -3.9189 5.7989 44 1 3.7111 -2.6515 7.5240 45 1 2.8510 -0.7488 8.8113 46 1 1.3852 1.0665 5.2376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988966905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:43 Heat of formation + Delta-G solvation = 10.123763 kcal Electronic energy + Delta-G solvation = -30206.894919 eV Core-core repulsion = 26012.338312 eV Total energy + Delta-G solvation = -4194.556607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.83957 -41.70542 -39.65670 -37.22785 -37.02442 -34.24472 -33.31090 -31.67601 -31.42951 -30.25500 -28.99864 -28.45808 -26.79212 -25.68113 -24.10197 -23.15918 -22.96935 -21.52486 -20.62411 -20.33174 -18.99067 -17.60139 -17.30869 -17.19105 -16.76759 -16.11690 -15.82036 -15.58230 -15.35150 -15.14245 -14.90813 -14.44695 -14.17090 -13.88637 -13.65778 -13.53459 -13.35250 -13.08340 -12.96970 -12.94013 -12.84460 -12.51133 -12.41958 -12.30729 -12.09820 -11.64754 -11.24277 -11.18612 -11.13349 -11.05895 -10.75404 -10.64410 -10.35570 -10.06068 -9.86406 -9.82590 -9.60570 -9.10937 -8.36740 -8.35496 -7.82391 -7.18491 -5.95124 -3.26325 0.75260 1.20420 1.94188 2.47849 3.23959 3.29979 3.35906 3.36739 3.38953 3.77957 4.16351 4.36021 4.40567 4.43941 4.64954 4.72221 4.85910 4.92622 5.04995 5.07125 5.14297 5.22717 5.24222 5.29040 5.44468 5.49072 5.53860 5.55624 5.65395 5.76873 5.77656 5.82897 5.97991 6.03643 6.07816 6.08942 6.14624 6.34719 6.38401 6.42369 6.47405 6.52443 6.72454 6.78544 6.89454 6.95341 7.53541 7.86323 8.22272 8.52313 9.34479 9.88582 10.23649 11.26726 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.003225 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.420009 B = 8680.060461 C =10729.114236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.072 0.928 4 C -0.136 4.136 5 C 0.172 3.828 6 H 0.066 0.934 7 N -0.713 5.713 8 C -0.250 4.250 9 H 0.073 0.927 10 C -0.007 4.007 11 N -0.927 5.927 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.291 1.291 15 H -0.290 1.290 16 C 0.061 3.939 17 N -0.607 5.607 18 C 0.603 3.397 19 O -0.553 6.553 20 C -0.225 4.225 21 C 0.108 3.892 22 N -0.471 5.471 23 C 0.071 3.929 24 C 0.075 3.925 25 C -0.095 4.095 26 C -0.136 4.136 27 C 0.071 3.929 28 F -0.143 7.143 29 C -0.097 4.097 30 C -0.036 4.036 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.388 0.612 37 H 0.257 0.743 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.200 0.800 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.137 0.863 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.470 4.274 16.625 17.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.090 0.910 4 C -0.175 4.175 5 C 0.060 3.940 6 H 0.083 0.917 7 N -0.353 5.353 8 C -0.381 4.381 9 H 0.091 0.909 10 C -0.204 4.204 11 N -0.574 5.574 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.218 1.218 15 H -0.217 1.217 16 C -0.065 4.065 17 N -0.340 5.340 18 C 0.394 3.606 19 O -0.432 6.432 20 C -0.235 4.235 21 C -0.023 4.023 22 N -0.152 5.152 23 C -0.071 4.071 24 C -0.030 4.030 25 C -0.115 4.115 26 C -0.156 4.156 27 C 0.051 3.949 28 F -0.121 7.121 29 C -0.116 4.116 30 C -0.041 4.041 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.216 0.784 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.148 0.852 45 H 0.155 0.845 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.490 4.469 16.911 17.668 hybrid contribution 0.693 -0.741 -0.074 1.017 sum -1.797 3.728 16.838 17.339 Atomic orbital electron populations 1.22128 0.95103 1.02177 1.02457 1.21475 0.94253 0.96077 0.84356 0.90961 1.23004 0.98924 0.99649 0.95901 1.21297 0.94812 0.89396 0.88491 0.91651 1.42341 1.14257 1.27565 1.51107 1.19272 0.90292 1.06192 1.22339 0.90927 1.24769 0.97841 0.98522 0.99273 1.69664 1.32367 1.24068 1.31337 0.86149 0.83500 0.79208 0.77454 1.20473 1.21786 1.21704 1.23814 0.94572 0.88092 0.99994 1.48394 1.52448 1.28792 1.04394 1.16777 0.79760 0.83583 0.80464 1.90725 1.40654 1.28414 1.83437 1.19929 1.12965 0.98425 0.92219 1.23374 0.94656 0.95252 0.89049 1.43741 1.47706 1.18487 1.05230 1.22140 0.97126 0.83563 1.04230 1.18297 1.02517 0.91376 0.90778 1.19786 1.02810 0.99287 0.89606 1.20714 1.00926 0.93507 1.00459 1.17342 1.01478 0.86849 0.89210 1.91476 1.86712 1.56331 1.77610 1.20555 1.00591 0.99146 0.91300 1.18415 1.00001 0.94073 0.91622 0.91432 0.91977 0.92596 0.90258 0.90331 0.77785 0.93314 0.90763 0.91011 0.78356 0.90544 0.88820 0.89722 0.85202 0.84472 0.83717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.11 37.15 0.34 -1.88 16 2 C 0.14 2.09 3.46 -66.95 -0.23 1.85 16 3 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 4 C -0.14 -2.03 6.11 -24.89 -0.15 -2.19 16 5 C 0.17 3.02 3.69 -65.78 -0.24 2.77 16 6 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 7 N -0.71 -15.72 5.28 -51.35 -0.27 -15.99 16 8 C -0.25 -6.18 9.98 -15.06 -0.15 -6.33 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 11 N -0.93 -25.83 13.06 55.49 0.72 -25.11 16 12 Si 0.91 20.53 29.55 -169.99 -5.02 15.51 16 13 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.06 0.95 4.95 -2.52 -0.01 0.94 16 17 N -0.61 -9.53 3.06 -164.45 -0.50 -10.03 16 18 C 0.60 10.27 7.63 -12.75 -0.10 10.17 16 19 O -0.55 -10.67 15.22 5.21 0.08 -10.59 16 20 C -0.23 -3.44 6.22 -103.31 -0.64 -4.09 16 21 C 0.11 1.39 9.63 -16.62 -0.16 1.23 16 22 N -0.47 -5.23 3.15 -121.58 -0.38 -5.61 16 23 C 0.07 0.50 10.99 59.85 0.66 1.15 16 24 C 0.07 0.91 6.79 -83.94 -0.57 0.35 16 25 C -0.09 -0.93 9.91 -39.43 -0.39 -1.33 16 26 C -0.14 -1.40 9.99 -39.49 -0.39 -1.79 16 27 C 0.07 0.91 7.29 -39.42 -0.29 0.62 16 28 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 29 C -0.10 -1.39 9.84 -39.30 -0.39 -1.78 16 30 C -0.04 -0.53 6.27 -104.96 -0.66 -1.19 16 31 H 0.07 1.04 6.85 -51.93 -0.36 0.68 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.19 7.70 -51.93 -0.40 0.79 16 36 H 0.39 9.20 7.71 -40.82 -0.31 8.89 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.07 1.10 5.35 -51.93 -0.28 0.82 16 39 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 40 H 0.20 2.39 4.63 -52.49 -0.24 2.15 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 43 H 0.08 0.44 8.03 -51.93 -0.42 0.03 16 44 H 0.13 0.88 8.01 -52.48 -0.42 0.46 16 45 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.15 2.21 7.49 -52.49 -0.39 1.82 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -30.78 380.19 -9.25 -40.03 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.16 Total: 9.66 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.48 Total: -1.77 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.43 Total: -56.74 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.08 Total: -10.59 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.78 -9.25 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988966905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.157 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds