Wall clock time and date at job start Wed Apr 1 2020 05:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.00072 * 2 1 4 4 C 1.54340 * 109.98862 * 238.96427 * 2 1 3 5 5 C 1.55157 * 103.01998 * 218.66314 * 4 2 1 6 6 H 1.08996 * 111.00403 * 277.23327 * 5 4 2 7 7 N 1.46504 * 111.00336 * 153.38067 * 5 4 2 8 8 C 1.36936 * 120.00098 * 161.35054 * 7 5 4 9 9 H 1.08002 * 119.99966 * 0.02562 * 8 7 5 10 10 C 1.38812 * 120.00144 * 180.02562 * 8 7 5 11 11 N 1.31618 * 119.99857 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00029 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47461 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47610 * 119.99764 * 12 10 8 15 15 H 1.48509 * 109.47047 * 239.99761 * 12 10 8 16 16 C 1.54912 * 101.58272 * 35.31039 * 5 4 2 17 17 N 1.47017 * 109.88589 * 121.09794 * 2 1 3 18 18 C 1.34772 * 125.64988 * 298.39823 * 17 2 1 19 19 O 1.21676 * 120.00184 * 0.79492 * 18 17 2 20 20 C 1.46908 * 120.00223 * 180.80548 * 18 17 2 21 21 C 1.36378 * 126.76189 * 351.52390 * 20 18 17 22 22 N 1.35452 * 109.77318 * 180.02562 * 21 20 18 23 23 C 1.46500 * 124.79317 * 180.02562 * 22 21 20 24 24 C 1.38051 * 110.41290 * 0.02562 * 22 21 20 25 25 C 1.39118 * 133.15758 * 179.97438 * 24 22 21 26 26 C 1.37756 * 119.96391 * 179.70903 * 25 24 22 27 27 C 1.38950 * 120.60916 * 0.59221 * 26 25 24 28 28 F 1.35097 * 119.87619 * 179.70232 * 27 26 25 29 29 C 1.37950 * 120.24345 * 359.42333 * 27 26 25 30 30 C 1.39286 * 119.65114 * 0.27529 * 29 27 26 31 31 H 1.09002 * 109.46878 * 300.35476 * 1 2 3 32 32 H 1.08996 * 109.47399 * 60.35105 * 1 2 3 33 33 H 1.09002 * 109.47366 * 180.36031 * 1 2 3 34 34 H 1.09005 * 110.84752 * 100.19815 * 4 2 1 35 35 H 1.09000 * 110.66632 * 337.04588 * 4 2 1 36 36 H 0.97003 * 119.99775 * 341.35010 * 7 5 4 37 37 H 0.97000 * 120.00148 * 180.02562 * 11 10 8 38 38 H 1.08997 * 110.36822 * 204.15526 * 16 5 4 39 39 H 1.08993 * 110.36622 * 81.82354 * 16 5 4 40 40 H 1.08001 * 125.11308 * 0.07694 * 21 20 18 41 41 H 1.09006 * 109.46877 * 270.00287 * 23 22 21 42 42 H 1.08993 * 109.47259 * 30.00141 * 23 22 21 43 43 H 1.08999 * 109.47293 * 150.00353 * 23 22 21 44 44 H 1.08006 * 120.01659 * 0.02562 * 25 24 22 45 45 H 1.07997 * 119.69673 * 180.31729 * 26 25 24 46 46 H 1.07997 * 120.17048 * 180.25093 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0575 -0.7478 -1.2428 5 6 3.2863 -1.5183 -0.6916 6 1 4.1668 -0.8769 -0.6581 7 7 3.5474 -2.7242 -1.4815 8 6 4.7733 -3.3313 -1.4194 9 1 5.5475 -2.9214 -0.7877 10 6 5.0209 -4.4736 -2.1682 11 7 4.0772 -4.9735 -2.9376 12 14 6.6929 -5.3021 -2.0829 13 1 7.5714 -4.5495 -1.1517 14 1 6.5309 -6.6950 -1.5942 15 1 7.3060 -5.3201 -3.4354 16 6 2.8099 -1.8826 0.7367 17 7 2.0300 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1289 0.6156 2.7191 20 6 2.3841 -1.1589 3.5569 21 6 3.0235 -2.3580 3.4423 22 7 3.4159 -2.7869 4.6657 23 6 4.1327 -4.0384 4.9226 24 6 3.0450 -1.8779 5.6363 25 6 3.2042 -1.8431 7.0180 26 6 2.7206 -0.7739 7.7395 27 6 2.0616 0.2700 7.1017 28 9 1.5880 1.3084 7.8246 29 6 1.8941 0.2526 5.7325 30 6 2.3843 -0.8204 4.9919 31 1 -0.3633 0.5194 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3634 -1.0276 0.0065 34 1 2.3596 -0.0449 -2.0192 35 1 1.3065 -1.4405 -1.6226 36 1 2.8519 -3.0927 -2.0485 37 1 4.2501 -5.7719 -3.4606 38 1 3.6655 -2.0413 1.3931 39 1 2.1801 -2.7718 0.7113 40 1 3.1924 -2.8859 2.5153 41 1 3.4143 -4.8383 5.1022 42 1 4.7472 -4.2893 4.0581 43 1 4.7699 -3.9189 5.7989 44 1 3.7111 -2.6515 7.5240 45 1 2.8510 -0.7488 8.8113 46 1 1.3852 1.0665 5.2376 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988966905.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:41 Heat of formation + Delta-G solvation = -6.756916 kcal Electronic energy + Delta-G solvation = -30207.626921 eV Core-core repulsion = 26012.338312 eV Total energy + Delta-G solvation = -4195.288608 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.84929 -42.66668 -40.92591 -38.59236 -37.94121 -35.94228 -34.28867 -33.22570 -32.73956 -31.12540 -30.06735 -29.94198 -27.64402 -26.90449 -25.83365 -24.19625 -24.08979 -22.54744 -21.72369 -21.71109 -20.17570 -19.18176 -18.50843 -18.24796 -17.80846 -17.35332 -16.85822 -16.74687 -16.34760 -16.27473 -16.09505 -15.82293 -15.41457 -15.26324 -14.95317 -14.92216 -14.31906 -14.29284 -14.16581 -13.82303 -13.78183 -13.61644 -13.49827 -13.41043 -13.20120 -12.98024 -12.86465 -12.78335 -12.22790 -12.12618 -12.06846 -12.00657 -11.96322 -11.66959 -11.47547 -11.02129 -10.84521 -10.78595 -9.67458 -9.31494 -9.02639 -8.78338 -7.91340 -5.21272 -0.20936 0.26960 0.87823 1.51781 1.54641 1.62433 1.62927 2.02063 2.27712 2.59505 2.69845 3.20633 3.40244 3.44701 3.52125 3.62028 3.80442 3.82858 3.95273 4.00410 4.10390 4.18231 4.25723 4.32239 4.39728 4.45775 4.46709 4.49485 4.55206 4.63892 4.72042 4.75846 4.76376 4.86388 4.91535 5.08108 5.12032 5.13076 5.16094 5.25519 5.38519 5.40120 5.53050 5.57361 5.59256 5.95219 6.10962 6.29261 6.57214 7.23467 7.37668 8.08359 8.33498 9.31586 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.003225 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.420009 B = 8680.060461 C =10729.114236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.073 0.927 4 C -0.123 4.123 5 C 0.167 3.833 6 H 0.063 0.937 7 N -0.721 5.721 8 C -0.239 4.239 9 H 0.082 0.918 10 C -0.067 4.067 11 N -0.966 5.966 12 Si 0.966 3.034 13 H -0.263 1.263 14 H -0.294 1.294 15 H -0.301 1.301 16 C 0.075 3.925 17 N -0.606 5.606 18 C 0.598 3.402 19 O -0.586 6.586 20 C -0.264 4.264 21 C 0.123 3.877 22 N -0.462 5.462 23 C 0.060 3.940 24 C 0.069 3.931 25 C -0.076 4.076 26 C -0.130 4.130 27 C 0.066 3.934 28 F -0.148 7.148 29 C -0.126 4.126 30 C -0.064 4.064 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.378 0.622 37 H 0.250 0.750 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.207 0.793 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.174 0.826 45 H 0.172 0.828 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 2.990 18.837 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.091 0.909 4 C -0.162 4.162 5 C 0.056 3.944 6 H 0.081 0.919 7 N -0.361 5.361 8 C -0.370 4.370 9 H 0.099 0.901 10 C -0.260 4.260 11 N -0.616 5.616 12 Si 0.796 3.204 13 H -0.187 1.187 14 H -0.221 1.221 15 H -0.229 1.229 16 C -0.050 4.050 17 N -0.339 5.339 18 C 0.391 3.609 19 O -0.469 6.469 20 C -0.274 4.274 21 C -0.011 4.011 22 N -0.141 5.141 23 C -0.079 4.079 24 C -0.036 4.036 25 C -0.095 4.095 26 C -0.150 4.150 27 C 0.046 3.954 28 F -0.127 7.127 29 C -0.146 4.146 30 C -0.069 4.069 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.211 0.789 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.223 0.777 41 H 0.110 0.890 42 H 0.119 0.881 43 H 0.129 0.871 44 H 0.192 0.808 45 H 0.190 0.810 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.813 3.204 19.173 19.456 hybrid contribution 0.165 -0.283 -0.674 0.750 sum -0.648 2.921 18.498 18.739 Atomic orbital electron populations 1.22046 0.94334 1.01995 1.02638 1.21558 0.94892 0.96010 0.83916 0.90908 1.22911 0.97638 0.99493 0.96144 1.21417 0.95837 0.88048 0.89083 0.91907 1.42437 1.13301 1.28659 1.51654 1.19636 0.91129 1.05464 1.20806 0.90055 1.25470 1.00823 0.99782 0.99948 1.69807 1.34200 1.24616 1.32968 0.85189 0.80184 0.78138 0.76902 1.18747 1.22110 1.22920 1.23548 0.94841 0.87826 0.98785 1.48400 1.52298 1.28724 1.04434 1.17129 0.79360 0.83380 0.81055 1.90694 1.42292 1.29999 1.83913 1.19913 1.15426 0.99868 0.92234 1.23336 0.93457 0.94216 0.90090 1.44000 1.46686 1.19203 1.04211 1.22530 0.97681 0.81915 1.05781 1.18554 1.02332 0.90831 0.91884 1.20267 1.01100 0.99789 0.88371 1.21093 0.99478 0.92287 1.02115 1.17581 1.01671 0.87469 0.88634 1.91457 1.86882 1.56850 1.77523 1.20453 1.02466 0.99276 0.92415 1.18618 1.01272 0.95240 0.91751 0.93300 0.89712 0.92877 0.88933 0.90360 0.78949 0.94082 0.89689 0.91329 0.77723 0.89002 0.88126 0.87103 0.80825 0.81048 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.11 71.98 0.66 -3.55 16 2 C 0.14 4.09 3.46 45.35 0.16 4.25 16 3 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.12 -3.59 6.11 31.79 0.19 -3.40 16 5 C 0.17 5.72 3.69 46.38 0.17 5.89 16 6 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 7 N -0.72 -31.48 5.28 -316.37 -1.67 -33.14 16 8 C -0.24 -11.58 9.98 84.03 0.84 -10.74 16 9 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 10 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 11 N -0.97 -54.29 13.06 21.65 0.28 -54.01 16 12 Si 0.97 41.79 29.55 68.60 2.03 43.82 16 13 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 14 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 15 H -0.30 -13.49 7.11 99.48 0.71 -12.79 16 16 C 0.08 2.31 4.95 86.85 0.43 2.74 16 17 N -0.61 -19.21 3.06 -792.44 -2.43 -21.64 16 18 C 0.60 21.14 7.63 86.51 0.66 21.80 16 19 O -0.59 -24.05 15.22 -4.27 -0.07 -24.12 16 20 C -0.26 -8.22 6.22 -19.01 -0.12 -8.34 16 21 C 0.12 3.03 9.63 83.70 0.81 3.83 16 22 N -0.46 -9.05 3.15 -538.58 -1.69 -10.75 16 23 C 0.06 0.60 10.99 127.77 1.40 2.01 16 24 C 0.07 1.53 6.79 38.89 0.26 1.80 16 25 C -0.08 -1.19 9.91 22.37 0.22 -0.97 16 26 C -0.13 -2.27 9.99 22.33 0.22 -2.05 16 27 C 0.07 1.66 7.29 22.37 0.16 1.83 16 28 F -0.15 -3.87 17.26 44.97 0.78 -3.09 16 29 C -0.13 -3.84 9.84 22.45 0.22 -3.62 16 30 C -0.06 -1.91 6.27 -20.08 -0.13 -2.04 16 31 H 0.05 1.55 6.85 -2.39 -0.02 1.53 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 35 H 0.08 2.32 7.70 -2.39 -0.02 2.30 16 36 H 0.38 17.99 7.71 -92.71 -0.71 17.27 16 37 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 38 H 0.09 2.42 5.35 -2.39 -0.01 2.41 16 39 H 0.07 2.18 8.01 -2.39 -0.02 2.16 16 40 H 0.21 4.65 4.63 -2.91 -0.01 4.64 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.10 0.92 8.13 -2.39 -0.02 0.90 16 43 H 0.11 0.57 8.03 -2.39 -0.02 0.55 16 44 H 0.17 1.23 8.01 -2.91 -0.02 1.21 16 45 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.12 4.06 7.49 -2.91 -0.02 4.04 16 Total: -1.00 -68.95 380.19 4.17 -64.78 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 0.31 Total: 31.73 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.63 Total: 6.42 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.51 Total: -119.54 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.07 Total: -24.12 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.78 Total: -3.09 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -68.95 4.17 -64.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988966905.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.027 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds