Wall clock time and date at job start Wed Apr 1 2020 05:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35734 * 117.00085 * 2 1 4 4 C 1.40440 * 119.68671 * 174.59260 * 3 2 1 5 5 C 1.36116 * 120.05265 * 179.97438 * 4 3 2 6 6 C 1.40735 * 119.30383 * 0.02562 * 5 4 3 7 7 N 1.33206 * 132.16384 * 179.97438 * 6 5 4 8 8 C 1.32244 * 109.70152 * 180.02562 * 7 6 5 9 9 C 1.38770 * 108.13570 * 359.97438 * 8 7 6 10 10 C 1.46182 * 126.76020 * 179.97438 * 9 8 7 11 11 O 1.21759 * 119.99601 * 171.83645 * 10 9 8 12 12 N 1.34765 * 120.00631 * 351.83299 * 10 9 8 13 13 C 1.47423 * 125.64651 * 359.39545 * 12 10 9 14 14 C 1.54911 * 104.83444 * 204.17042 * 13 12 10 15 15 H 1.08996 * 111.00082 * 81.06378 * 14 13 12 16 16 N 1.46499 * 111.00528 * 204.91455 * 14 13 12 17 17 C 1.36936 * 119.99994 * 266.51155 * 16 14 13 18 18 H 1.08000 * 120.00488 * 5.15063 * 17 16 14 19 19 C 1.38818 * 119.99864 * 185.15337 * 17 16 14 20 20 N 1.31623 * 120.00011 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47316 * 59.99511 * 21 19 17 23 23 H 1.48508 * 109.47009 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46933 * 299.99274 * 21 19 17 25 25 C 1.55153 * 101.58318 * 322.98963 * 14 13 12 26 26 C 1.47024 * 125.65369 * 179.44713 * 12 10 9 27 27 H 1.09001 * 110.01034 * 59.40614 * 26 12 10 28 28 C 1.53002 * 109.88093 * 298.31368 * 26 12 10 29 29 N 1.36465 * 119.18716 * 0.23648 * 6 5 4 30 30 N 1.31210 * 119.67662 * 354.57507 * 3 2 1 31 31 H 1.09008 * 109.46911 * 184.82393 * 1 2 3 32 32 H 1.09006 * 109.47250 * 304.81870 * 1 2 3 33 33 H 1.08993 * 109.47621 * 64.82271 * 1 2 3 34 34 H 1.08004 * 119.97050 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.34609 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.93371 * 179.97438 * 8 7 6 37 37 H 1.09001 * 110.37004 * 85.33570 * 13 12 10 38 38 H 1.08997 * 110.36800 * 323.01357 * 13 12 10 39 39 H 0.96996 * 119.99979 * 86.51269 * 16 14 13 40 40 H 0.97002 * 120.00027 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.72332 * 153.85946 * 25 14 13 42 42 H 1.08997 * 110.72164 * 277.13929 * 25 14 13 43 43 H 1.08996 * 109.47261 * 302.19440 * 28 26 12 44 44 H 1.08998 * 109.47164 * 62.18972 * 28 26 12 45 45 H 1.08995 * 109.47138 * 182.18950 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4432 1.2777 0.1150 5 6 4.0689 2.4865 0.1153 6 6 3.3005 3.6599 0.0000 7 7 3.6353 4.9489 -0.0271 8 6 2.5468 5.6898 -0.1502 9 6 1.4506 4.8408 -0.2064 10 6 0.0481 5.2306 -0.3404 11 8 -0.8046 4.3816 -0.5266 12 7 -0.3012 6.5296 -0.2579 13 6 0.6225 7.6544 -0.0236 14 6 -0.2589 8.7700 0.5915 15 1 -0.4114 8.6039 1.6579 16 7 0.3208 10.0928 0.3458 17 6 1.1446 10.6634 1.2791 18 1 1.4337 10.1054 2.1574 19 6 1.6079 11.9591 1.0963 20 7 1.2559 12.6390 0.0257 21 14 2.7322 12.7372 2.3691 22 1 3.9707 11.9279 2.4964 23 1 3.0837 14.1156 1.9423 24 1 2.0362 12.7868 3.6799 25 6 -1.5842 8.5889 -0.1947 26 6 -1.6666 7.0597 -0.3856 27 1 -2.3087 6.6245 0.3801 28 6 -2.2219 6.7379 -1.7745 29 7 1.9436 3.5592 -0.1046 30 7 1.3289 2.3035 -0.1078 31 1 -0.3633 -1.0241 0.0864 32 1 -0.3634 0.5868 0.8437 33 1 -0.3634 0.4371 -0.9299 34 1 4.0223 0.3702 0.2024 35 1 5.1438 2.5445 0.2038 36 1 2.5163 6.7682 -0.1986 37 1 1.0576 7.9905 -0.9649 38 1 1.4068 7.3622 0.6747 39 1 0.1212 10.5644 -0.4779 40 1 1.5799 13.5443 -0.1023 41 1 -2.4311 8.9508 0.3884 42 1 -1.5333 9.0957 -1.1583 43 1 -1.5654 7.1604 -2.5351 44 1 -2.2772 5.6569 -1.9022 45 1 -3.2186 7.1672 -1.8757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989055292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:53 Heat of formation + Delta-G solvation = 89.016397 kcal Electronic energy + Delta-G solvation = -30279.436588 eV Core-core repulsion = 26108.220984 eV Total energy + Delta-G solvation = -4171.215604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.75677 -40.23641 -39.68474 -37.32303 -37.03909 -34.25168 -33.90330 -32.18065 -31.42677 -30.88892 -29.55317 -28.45391 -27.88724 -25.73328 -24.88723 -24.00710 -23.50013 -22.43139 -21.57080 -20.38720 -19.61396 -18.96609 -17.97665 -17.45345 -17.10707 -16.90941 -16.37773 -16.14230 -15.71898 -15.28514 -15.15260 -14.56834 -14.39061 -14.15213 -13.89797 -13.75043 -13.68709 -13.24042 -13.04161 -12.86146 -12.57381 -12.40685 -12.35024 -12.15569 -11.71650 -11.61378 -11.43858 -11.15930 -11.04592 -10.98302 -10.71904 -10.65002 -10.34534 -10.27250 -10.06627 -9.80063 -9.73344 -9.34077 -9.01621 -8.57469 -8.32693 -7.11857 -5.87384 -3.19080 0.07495 0.70658 1.32618 2.13094 2.50935 3.01112 3.04891 3.34642 3.40405 3.45731 3.45832 3.73691 3.85360 4.26366 4.48682 4.62123 4.70011 4.80794 4.92186 4.98263 5.00437 5.06729 5.19503 5.22802 5.27221 5.29918 5.42585 5.47832 5.52534 5.61907 5.71522 5.76531 5.79406 6.02733 6.08171 6.14908 6.23310 6.31228 6.41483 6.44756 6.51839 6.61936 6.78932 7.22000 7.43620 7.61683 7.67362 8.27484 8.30957 9.42297 9.94735 10.29903 11.34174 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.002922 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.443853 B = 9580.125778 C =11223.750872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.337 3.663 4 C -0.169 4.169 5 C 0.017 3.983 6 C 0.159 3.841 7 N -0.452 5.452 8 C 0.069 3.931 9 C -0.045 4.045 10 C 0.604 3.396 11 O -0.536 6.536 12 N -0.596 5.596 13 C 0.054 3.946 14 C 0.174 3.826 15 H 0.071 0.929 16 N -0.709 5.709 17 C -0.252 4.252 18 H 0.073 0.927 19 C -0.005 4.005 20 N -0.928 5.928 21 Si 0.908 3.092 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.138 4.138 26 C 0.144 3.856 27 H 0.074 0.926 28 C -0.161 4.161 29 N -0.210 5.210 30 N -0.307 5.307 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.165 0.835 35 H 0.175 0.825 36 H 0.217 0.783 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -23.049 -1.426 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.189 6.189 3 C 0.128 3.872 4 C -0.195 4.195 5 C -0.010 4.010 6 C -0.085 4.085 7 N -0.172 5.172 8 C -0.093 4.093 9 C -0.166 4.166 10 C 0.392 3.608 11 O -0.414 6.414 12 N -0.330 5.330 13 C -0.072 4.072 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.349 5.349 17 C -0.383 4.383 18 H 0.091 0.909 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.738 3.262 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.177 4.177 26 C 0.041 3.959 27 H 0.092 0.908 28 C -0.219 4.219 29 N 0.018 4.982 30 N -0.141 5.141 31 H 0.124 0.876 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.183 0.817 35 H 0.193 0.807 36 H 0.233 0.767 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.222 0.778 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.303 -23.397 -1.405 23.441 hybrid contribution 0.422 0.225 0.357 0.597 sum 0.119 -23.172 -1.048 23.196 Atomic orbital electron populations 1.23135 0.75824 1.04003 1.03685 1.86369 1.24017 1.21261 1.87266 1.20714 0.90724 0.85585 0.90206 1.20854 0.91474 1.00061 1.07061 1.20486 1.01447 0.86877 0.92154 1.21299 0.81871 0.95250 1.10090 1.70520 1.29388 0.98192 1.19124 1.24225 0.85391 1.00917 0.98769 1.20896 0.96680 0.80187 1.18862 1.16027 0.85105 0.81742 0.77946 1.90827 1.50870 1.49470 1.50247 1.48188 1.10038 1.04743 1.69995 1.24000 0.94516 0.87229 1.01419 1.21279 0.89520 0.85943 0.97173 0.91139 1.42303 1.55840 1.14467 1.22262 1.19207 1.21515 0.96186 1.01407 0.90925 1.24783 1.00839 0.96738 0.97873 1.69652 1.48566 1.11623 1.27658 0.86272 0.80628 0.78466 0.80830 1.20984 1.21666 1.21154 1.23081 1.00075 0.92410 1.02105 1.21539 0.82406 0.94298 0.97657 0.90776 1.22141 1.00835 1.02654 0.96318 1.45777 1.06259 1.02929 1.43188 1.75713 1.23058 0.87777 1.27534 0.87572 0.91452 0.91339 0.81713 0.80736 0.76742 0.90505 0.90111 0.77811 0.93241 0.90116 0.90205 0.92402 0.91687 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.40 101.05 1.05 1.28 16 2 O -0.29 -2.75 10.49 -18.91 -0.20 -2.95 16 3 C 0.34 3.79 7.59 -16.99 -0.13 3.66 16 4 C -0.17 -1.39 9.97 -39.52 -0.39 -1.78 16 5 C 0.02 0.15 10.10 -39.40 -0.40 -0.24 16 6 C 0.16 2.22 7.85 -156.13 -1.23 1.00 16 7 N -0.45 -6.94 11.25 -12.23 -0.14 -7.08 16 8 C 0.07 1.06 10.19 -17.18 -0.18 0.88 16 9 C -0.04 -0.74 7.05 -81.85 -0.58 -1.32 16 10 C 0.60 10.50 7.59 -13.08 -0.10 10.40 16 11 O -0.54 -10.45 15.91 5.14 0.08 -10.37 16 12 N -0.60 -9.41 3.06 -164.72 -0.50 -9.92 16 13 C 0.05 0.86 4.90 -2.53 -0.01 0.85 16 14 C 0.17 3.08 3.72 -65.78 -0.24 2.84 16 15 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 16 N -0.71 -15.99 5.23 -51.35 -0.27 -16.26 16 17 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 20 N -0.93 -26.47 13.06 55.49 0.72 -25.74 16 21 Si 0.91 21.34 29.55 -169.99 -5.02 16.32 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 C -0.14 -2.06 6.13 -24.90 -0.15 -2.21 16 26 C 0.14 2.09 3.46 -66.95 -0.23 1.86 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 C -0.16 -2.18 9.10 37.16 0.34 -1.84 16 29 N -0.21 -3.32 4.04 -8.68 -0.04 -3.36 16 30 N -0.31 -4.53 10.51 30.56 0.32 -4.21 16 31 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.61 8.06 -51.93 -0.42 0.20 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 35 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.22 3.07 4.78 -52.49 -0.25 2.82 16 37 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 38 H 0.08 1.26 5.48 -51.93 -0.28 0.98 16 39 H 0.39 9.32 7.78 -40.82 -0.32 9.01 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.21 7.71 -51.93 -0.40 0.80 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.97 6.92 -51.93 -0.36 0.61 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.11 375.80 -7.66 -40.77 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -5.79 Total: 8.59 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -2.50 Total: 8.54 kcal Atomic # 7 Polarization: -66.66 SS G_CDS: 0.10 Total: -66.56 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.12 Total: -13.32 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.11 -7.66 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989055292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.787 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds