Wall clock time and date at job start Wed Apr 1 2020 05:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35734 * 117.00085 * 2 1 4 4 C 1.40440 * 119.68671 * 174.59260 * 3 2 1 5 5 C 1.36116 * 120.05265 * 179.97438 * 4 3 2 6 6 C 1.40735 * 119.30383 * 0.02562 * 5 4 3 7 7 N 1.33206 * 132.16384 * 179.97438 * 6 5 4 8 8 C 1.32244 * 109.70152 * 180.02562 * 7 6 5 9 9 C 1.38770 * 108.13570 * 359.97438 * 8 7 6 10 10 C 1.46182 * 126.76020 * 179.97438 * 9 8 7 11 11 O 1.21759 * 119.99601 * 171.83645 * 10 9 8 12 12 N 1.34765 * 120.00631 * 351.83299 * 10 9 8 13 13 C 1.47423 * 125.64651 * 359.39545 * 12 10 9 14 14 C 1.54911 * 104.83444 * 204.17042 * 13 12 10 15 15 H 1.08996 * 111.00082 * 81.06378 * 14 13 12 16 16 N 1.46499 * 111.00528 * 204.91455 * 14 13 12 17 17 C 1.36936 * 119.99994 * 266.51155 * 16 14 13 18 18 H 1.08000 * 120.00488 * 5.15063 * 17 16 14 19 19 C 1.38818 * 119.99864 * 185.15337 * 17 16 14 20 20 N 1.31623 * 120.00011 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99927 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47316 * 59.99511 * 21 19 17 23 23 H 1.48508 * 109.47009 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46933 * 299.99274 * 21 19 17 25 25 C 1.55153 * 101.58318 * 322.98963 * 14 13 12 26 26 C 1.47024 * 125.65369 * 179.44713 * 12 10 9 27 27 H 1.09001 * 110.01034 * 59.40614 * 26 12 10 28 28 C 1.53002 * 109.88093 * 298.31368 * 26 12 10 29 29 N 1.36465 * 119.18716 * 0.23648 * 6 5 4 30 30 N 1.31210 * 119.67662 * 354.57507 * 3 2 1 31 31 H 1.09008 * 109.46911 * 184.82393 * 1 2 3 32 32 H 1.09006 * 109.47250 * 304.81870 * 1 2 3 33 33 H 1.08993 * 109.47621 * 64.82271 * 1 2 3 34 34 H 1.08004 * 119.97050 * 0.02562 * 4 3 2 35 35 H 1.08002 * 120.34609 * 179.97438 * 5 4 3 36 36 H 1.07999 * 125.93371 * 179.97438 * 8 7 6 37 37 H 1.09001 * 110.37004 * 85.33570 * 13 12 10 38 38 H 1.08997 * 110.36800 * 323.01357 * 13 12 10 39 39 H 0.96996 * 119.99979 * 86.51269 * 16 14 13 40 40 H 0.97002 * 120.00027 * 180.02562 * 20 19 17 41 41 H 1.08999 * 110.72332 * 153.85946 * 25 14 13 42 42 H 1.08997 * 110.72164 * 277.13929 * 25 14 13 43 43 H 1.08996 * 109.47261 * 302.19440 * 28 26 12 44 44 H 1.08998 * 109.47164 * 62.18972 * 28 26 12 45 45 H 1.08995 * 109.47138 * 182.18950 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 3.4432 1.2777 0.1150 5 6 4.0689 2.4865 0.1153 6 6 3.3005 3.6599 0.0000 7 7 3.6353 4.9489 -0.0271 8 6 2.5468 5.6898 -0.1502 9 6 1.4506 4.8408 -0.2064 10 6 0.0481 5.2306 -0.3404 11 8 -0.8046 4.3816 -0.5266 12 7 -0.3012 6.5296 -0.2579 13 6 0.6225 7.6544 -0.0236 14 6 -0.2589 8.7700 0.5915 15 1 -0.4114 8.6039 1.6579 16 7 0.3208 10.0928 0.3458 17 6 1.1446 10.6634 1.2791 18 1 1.4337 10.1054 2.1574 19 6 1.6079 11.9591 1.0963 20 7 1.2559 12.6390 0.0257 21 14 2.7322 12.7372 2.3691 22 1 3.9707 11.9279 2.4964 23 1 3.0837 14.1156 1.9423 24 1 2.0362 12.7868 3.6799 25 6 -1.5842 8.5889 -0.1947 26 6 -1.6666 7.0597 -0.3856 27 1 -2.3087 6.6245 0.3801 28 6 -2.2219 6.7379 -1.7745 29 7 1.9436 3.5592 -0.1046 30 7 1.3289 2.3035 -0.1078 31 1 -0.3633 -1.0241 0.0864 32 1 -0.3634 0.5868 0.8437 33 1 -0.3634 0.4371 -0.9299 34 1 4.0223 0.3702 0.2024 35 1 5.1438 2.5445 0.2038 36 1 2.5163 6.7682 -0.1986 37 1 1.0576 7.9905 -0.9649 38 1 1.4068 7.3622 0.6747 39 1 0.1212 10.5644 -0.4779 40 1 1.5799 13.5443 -0.1023 41 1 -2.4311 8.9508 0.3884 42 1 -1.5333 9.0957 -1.1583 43 1 -1.5654 7.1604 -2.5351 44 1 -2.2772 5.6569 -1.9022 45 1 -3.2186 7.1672 -1.8757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989055292.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:52 Heat of formation + Delta-G solvation = 64.903985 kcal Electronic energy + Delta-G solvation = -30280.482181 eV Core-core repulsion = 26108.220984 eV Total energy + Delta-G solvation = -4172.261197 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.80892 -41.30032 -40.76554 -38.71468 -37.94401 -35.97706 -34.84742 -33.46967 -33.12406 -31.88892 -30.59653 -30.05891 -28.68908 -26.99367 -26.06287 -25.53752 -24.58907 -23.59452 -22.72785 -21.83549 -20.77799 -19.80195 -19.24432 -19.09726 -18.31099 -17.87396 -17.41074 -17.33692 -16.76820 -16.69390 -16.11881 -16.03990 -15.57942 -15.27837 -15.24678 -14.98872 -14.74252 -14.60756 -14.40675 -13.95182 -13.79402 -13.69268 -13.44177 -13.07273 -13.02705 -12.82894 -12.77730 -12.56233 -12.44684 -12.26436 -12.11469 -12.03868 -11.82318 -11.68682 -11.49181 -11.34185 -11.04954 -10.87694 -10.35898 -9.83265 -9.47169 -9.00624 -7.90789 -5.20620 -0.74371 -0.33123 0.32001 1.06207 1.54257 1.55461 1.60743 1.62696 1.92691 2.05676 2.08746 2.59961 2.82404 2.88163 3.37137 3.39685 3.54806 3.72847 3.81903 3.84411 3.97204 4.01987 4.16587 4.20648 4.24455 4.27694 4.33161 4.43721 4.48521 4.52158 4.62573 4.68940 4.72001 4.73035 4.85233 4.88508 5.05894 5.10846 5.16760 5.22656 5.38747 5.40550 5.59641 5.69660 6.24262 6.30059 6.33402 6.35559 6.97591 7.38849 8.09259 8.34214 9.31512 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.002922 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.443853 B = 9580.125778 C =11223.750872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.280 6.280 3 C 0.335 3.665 4 C -0.142 4.142 5 C 0.012 3.988 6 C 0.162 3.838 7 N -0.474 5.474 8 C 0.071 3.929 9 C -0.081 4.081 10 C 0.604 3.396 11 O -0.565 6.565 12 N -0.593 5.593 13 C 0.068 3.932 14 C 0.168 3.832 15 H 0.068 0.932 16 N -0.718 5.718 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.066 4.066 20 N -0.964 5.964 21 Si 0.965 3.035 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.280 1.280 25 C -0.124 4.124 26 C 0.143 3.857 27 H 0.079 0.921 28 C -0.153 4.153 29 N -0.222 5.222 30 N -0.350 5.350 31 H 0.144 0.856 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.215 0.785 35 H 0.217 0.783 36 H 0.218 0.782 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.378 0.622 40 H 0.251 0.749 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 -25.601 -0.719 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.181 6.181 3 C 0.127 3.873 4 C -0.167 4.167 5 C -0.014 4.014 6 C -0.084 4.084 7 N -0.195 5.195 8 C -0.090 4.090 9 C -0.202 4.202 10 C 0.393 3.607 11 O -0.445 6.445 12 N -0.326 5.326 13 C -0.057 4.057 14 C 0.057 3.943 15 H 0.086 0.914 16 N -0.357 5.357 17 C -0.375 4.375 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.614 5.614 21 Si 0.795 3.205 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.206 1.206 25 C -0.163 4.163 26 C 0.040 3.960 27 H 0.097 0.903 28 C -0.211 4.211 29 N 0.006 4.994 30 N -0.186 5.186 31 H 0.162 0.838 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.231 0.769 35 H 0.234 0.766 36 H 0.234 0.766 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.211 0.789 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.813 -25.994 -0.679 26.016 hybrid contribution 0.056 0.734 0.149 0.751 sum 0.869 -25.260 -0.529 25.281 Atomic orbital electron populations 1.23283 0.75118 1.06008 1.02333 1.86409 1.24674 1.20225 1.86746 1.21294 0.92193 0.85249 0.88552 1.21403 0.90068 1.01514 1.03738 1.21084 1.03098 0.85268 0.91953 1.22136 0.81829 0.96154 1.08274 1.70507 1.29303 0.99044 1.20598 1.24202 0.85387 1.00998 0.98454 1.20798 0.96339 0.81217 1.21827 1.16187 0.85456 0.81683 0.77390 1.90794 1.51750 1.50120 1.51864 1.48172 1.10439 1.04354 1.69611 1.23702 0.94153 0.86628 1.01224 1.21412 0.91057 0.84243 0.97606 0.91414 1.42380 1.55928 1.15979 1.21437 1.19572 1.20444 0.96006 1.01478 0.90285 1.25474 1.03038 0.97648 0.99707 1.69791 1.50491 1.11580 1.29532 0.85338 0.79201 0.77095 0.78871 1.20357 1.22589 1.20612 1.22973 0.98839 0.92637 1.01808 1.21643 0.81980 0.93796 0.98558 0.90343 1.22063 1.02050 1.01607 0.95357 1.45850 1.06892 1.03043 1.43579 1.75657 1.24716 0.88218 1.29993 0.83794 0.92811 0.92759 0.76860 0.76616 0.76553 0.90741 0.89774 0.78872 0.94026 0.88712 0.90137 0.92735 0.93324 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.40 113.37 1.18 1.58 16 2 O -0.28 -4.70 10.49 -90.58 -0.95 -5.65 16 3 C 0.34 6.87 7.59 85.32 0.65 7.51 16 4 C -0.14 -1.78 9.97 22.31 0.22 -1.56 16 5 C 0.01 0.18 10.10 22.39 0.23 0.40 16 6 C 0.16 4.35 7.85 134.06 1.05 5.40 16 7 N -0.47 -14.40 11.25 -192.61 -2.17 -16.56 16 8 C 0.07 2.24 10.19 84.76 0.86 3.10 16 9 C -0.08 -2.77 7.05 40.41 0.28 -2.48 16 10 C 0.60 21.61 7.59 86.31 0.66 22.26 16 11 O -0.56 -22.76 15.91 -4.54 -0.07 -22.83 16 12 N -0.59 -18.97 3.06 -793.24 -2.43 -21.40 16 13 C 0.07 2.20 4.90 86.86 0.43 2.63 16 14 C 0.17 5.92 3.72 46.38 0.17 6.10 16 15 H 0.07 2.45 8.09 -2.39 -0.02 2.43 16 16 N -0.72 -32.51 5.23 -316.38 -1.66 -34.17 16 17 C -0.24 -12.42 9.96 84.03 0.84 -11.58 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -3.55 5.50 84.86 0.47 -3.09 16 20 N -0.96 -55.92 13.06 21.65 0.28 -55.64 16 21 Si 0.97 44.09 29.55 68.60 2.03 46.12 16 22 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 C -0.12 -3.60 6.13 31.78 0.19 -3.41 16 26 C 0.14 4.09 3.46 45.34 0.16 4.24 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 C -0.15 -4.04 9.10 71.98 0.65 -3.39 16 29 N -0.22 -7.07 4.04 -181.37 -0.73 -7.80 16 30 N -0.35 -10.26 10.51 -170.58 -1.79 -12.05 16 31 H 0.14 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.05 0.97 8.06 -2.38 -0.02 0.95 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.21 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.22 1.39 8.06 -2.91 -0.02 1.36 16 36 H 0.22 6.39 4.78 -2.91 -0.01 6.37 16 37 H 0.07 2.46 7.95 -2.39 -0.02 2.44 16 38 H 0.08 2.67 5.48 -2.39 -0.01 2.66 16 39 H 0.38 18.45 7.78 -92.71 -0.72 17.73 16 40 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 41 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.08 2.37 7.71 -2.39 -0.02 2.35 16 43 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.46 6.92 -2.39 -0.02 1.45 16 45 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -74.00 375.80 0.87 -73.13 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.32 Total: 29.13 kcal Atomic # 6 Polarization: 19.69 SS G_CDS: 8.04 Total: 27.73 kcal Atomic # 7 Polarization: -139.13 SS G_CDS: -8.50 Total: -147.63 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.02 Total: -28.48 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -74.00 0.87 -73.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989055292.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.032 kcal (2) G-P(sol) polarization free energy of solvation -73.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds