Wall clock time and date at job start Wed Apr 1 2020 05:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.00152 * 2 1 4 4 C 1.54341 * 109.77755 * 121.16497 * 2 1 3 5 5 C 1.55147 * 103.02469 * 97.49432 * 4 2 1 6 6 H 1.09005 * 111.00695 * 277.23630 * 5 4 2 7 7 N 1.46502 * 111.00772 * 153.38152 * 5 4 2 8 8 C 1.36929 * 119.99989 * 161.35353 * 7 5 4 9 9 H 1.07999 * 120.00617 * 359.97438 * 8 7 5 10 10 C 1.38820 * 119.99605 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00022 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99680 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47551 * 59.99441 * 12 10 8 14 14 H 1.48503 * 109.46895 * 180.02562 * 12 10 8 15 15 H 1.48508 * 109.46867 * 299.99295 * 12 10 8 16 16 C 1.54915 * 101.58241 * 35.30654 * 5 4 2 17 17 N 1.47016 * 109.88445 * 238.89858 * 2 1 3 18 18 C 1.34780 * 125.64785 * 59.56383 * 17 2 1 19 19 O 1.21537 * 119.99808 * 3.50866 * 18 17 2 20 20 C 1.47993 * 120.00450 * 183.51574 * 18 17 2 21 21 C 1.39660 * 119.95067 * 332.50746 * 20 18 17 22 22 C 1.37662 * 120.04748 * 180.02562 * 21 20 18 23 23 C 1.40035 * 119.95034 * 0.02609 * 22 21 20 24 24 N 1.36252 * 120.04726 * 179.97438 * 23 22 21 25 25 N 1.29002 * 119.99723 * 359.97290 * 24 23 22 26 26 C 1.34772 * 120.00125 * 180.02562 * 25 24 23 27 27 N 1.34776 * 120.00400 * 180.02562 * 26 25 24 28 28 O 1.21561 * 119.99865 * 0.02562 * 26 25 24 29 29 C 1.40041 * 119.91339 * 359.95345 * 23 22 21 30 30 C 1.37665 * 119.94673 * 0.02562 * 29 23 22 31 31 H 1.08993 * 109.47180 * 179.64166 * 1 2 3 32 32 H 1.09001 * 109.47029 * 299.64382 * 1 2 3 33 33 H 1.09003 * 109.46795 * 59.64251 * 1 2 3 34 34 H 1.09004 * 110.84580 * 339.02309 * 4 2 1 35 35 H 1.09002 * 110.66356 * 215.88158 * 4 2 1 36 36 H 0.96998 * 119.99597 * 341.35148 * 7 5 4 37 37 H 0.96999 * 119.99745 * 180.02562 * 11 10 8 38 38 H 1.08998 * 110.37094 * 204.15304 * 16 5 4 39 39 H 1.09004 * 110.45829 * 81.87649 * 16 5 4 40 40 H 1.07998 * 119.97464 * 359.72878 * 21 20 18 41 41 H 1.07998 * 120.02121 * 179.97438 * 22 21 20 42 42 H 0.97003 * 119.99570 * 0.02562 * 27 26 25 43 43 H 0.96996 * 120.00177 * 180.02562 * 27 26 25 44 44 H 1.07993 * 120.02788 * 180.02562 * 29 23 22 45 45 H 1.08002 * 119.97252 * 179.97438 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0522 -0.7516 1.2428 5 6 2.3561 -2.1697 0.6917 6 1 1.4521 -2.7778 0.6581 7 7 3.3999 -2.8276 1.4816 8 6 3.5510 -4.1871 1.4193 9 1 2.9005 -4.7745 0.7883 10 6 4.5398 -4.8105 2.1682 11 7 5.3322 -4.0947 2.9376 12 14 4.7465 -6.6651 2.0828 13 1 5.0487 -7.0657 0.6852 14 1 5.8629 -7.0801 2.9697 15 1 3.4916 -7.3239 2.5262 16 6 2.8613 -1.8467 -0.7367 17 7 2.0300 -0.7141 -1.1838 18 6 1.7755 -0.3846 -2.4656 19 8 1.1309 0.6139 -2.7198 20 6 2.2806 -1.2386 -3.5637 21 6 3.4354 -2.0019 -3.3784 22 6 3.9074 -2.7966 -4.3986 23 6 3.2290 -2.8389 -5.6230 24 7 3.6947 -3.6243 -6.6342 25 7 4.7616 -4.3294 -6.4643 26 6 5.2226 -5.1059 -7.4647 27 7 6.3369 -5.8429 -7.2870 28 8 4.6333 -5.1416 -8.5273 29 6 2.0710 -2.0731 -5.8065 30 6 1.6022 -1.2800 -4.7835 31 1 -0.3633 -1.0276 -0.0064 32 1 -0.3633 0.5083 0.8932 33 1 -0.3633 0.5194 -0.8868 34 1 1.2884 -0.7950 2.0192 35 1 2.9600 -0.2827 1.6226 36 1 3.9839 -2.3001 2.0486 37 1 6.0233 -4.5303 3.4606 38 1 2.7178 -2.7050 -1.3931 39 1 3.9126 -1.5596 -0.7132 40 1 3.9612 -1.9650 -2.4358 41 1 4.8007 -3.3864 -4.2551 42 1 6.8069 -5.8147 -6.4389 43 1 6.6689 -6.4015 -8.0071 44 1 1.5462 -2.1045 -6.7498 45 1 0.7094 -0.6889 -4.9248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989839241.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:13 Heat of formation + Delta-G solvation = 26.722908 kcal Electronic energy + Delta-G solvation = -29460.758105 eV Core-core repulsion = 25286.841252 eV Total energy + Delta-G solvation = -4173.916853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.59168 -40.05584 -39.03844 -38.46676 -37.84187 -35.87321 -34.92389 -33.51774 -33.04152 -31.65087 -30.70513 -30.31338 -28.39678 -27.10489 -26.63116 -24.22447 -23.14548 -22.41871 -21.95699 -21.57555 -20.21258 -19.81035 -19.06770 -18.17053 -17.85956 -17.59667 -17.09852 -16.79074 -16.34986 -15.82682 -15.74060 -15.53086 -15.06596 -14.90701 -14.88616 -14.83039 -14.47493 -14.43906 -14.35218 -14.09389 -13.73492 -13.49851 -13.30008 -13.16531 -12.92152 -12.90195 -12.64778 -12.32832 -12.23441 -11.98943 -11.89314 -11.75476 -11.46916 -11.08118 -10.99379 -10.96808 -10.33571 -10.14689 -9.95910 -9.56052 -9.12941 -8.28820 -7.54265 -5.38051 -1.78900 0.49587 0.71297 1.14434 1.34770 1.59386 1.63175 1.88596 2.16820 2.28052 2.58500 2.62781 2.94512 3.23490 3.28217 3.55566 3.59988 3.81193 3.85660 4.03773 4.10248 4.37000 4.38691 4.49402 4.54997 4.62244 4.65978 4.73024 4.74960 4.86566 4.87858 4.99807 5.14313 5.21922 5.26963 5.34646 5.44568 5.59506 5.80675 5.87682 6.08705 6.32437 6.36487 6.43510 6.76703 6.83632 7.00678 7.11149 7.52782 7.72513 8.18810 8.62726 9.96290 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.006923 B = 0.003635 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4043.489554 B = 7700.735046 C =11370.423331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.126 3.874 3 H 0.059 0.941 4 C -0.114 4.114 5 C 0.091 3.909 6 H 0.184 0.816 7 N -0.508 5.508 8 C 0.395 3.605 9 H 0.267 0.733 10 C -0.082 4.082 11 N -0.525 5.525 12 Si 1.020 2.980 13 H -0.254 1.254 14 H -0.253 1.253 15 H -0.214 1.214 16 C 0.074 3.926 17 N -0.622 5.622 18 C 0.600 3.400 19 O -0.618 6.618 20 C -0.390 4.390 21 C -0.027 4.027 22 C -0.266 4.266 23 C 0.096 3.904 24 N -0.479 5.479 25 N -0.637 5.637 26 C 0.576 3.424 27 N -0.852 5.852 28 O -0.769 6.769 29 C -0.274 4.274 30 C -0.012 4.012 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.140 0.860 35 H 0.113 0.887 36 H 0.447 0.553 37 H 0.383 0.617 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.137 0.863 41 H 0.073 0.927 42 H 0.394 0.606 43 H 0.392 0.608 44 H 0.046 0.954 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.750 -5.096 61.083 61.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.023 3.977 3 H 0.077 0.923 4 C -0.151 4.151 5 C -0.013 4.013 6 H 0.201 0.799 7 N -0.100 5.100 8 C 0.212 3.788 9 H 0.282 0.718 10 C -0.319 4.319 11 N -0.151 5.151 12 Si 0.834 3.166 13 H -0.178 1.178 14 H -0.176 1.176 15 H -0.136 1.136 16 C -0.049 4.049 17 N -0.356 5.356 18 C 0.399 3.601 19 O -0.504 6.504 20 C -0.399 4.399 21 C -0.048 4.048 22 C -0.290 4.290 23 C -0.067 4.067 24 N -0.305 5.305 25 N -0.516 5.516 26 C 0.274 3.726 27 N -0.419 5.419 28 O -0.665 6.665 29 C -0.298 4.298 30 C -0.034 4.034 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.040 0.960 34 H 0.158 0.842 35 H 0.131 0.869 36 H 0.291 0.709 37 H 0.203 0.797 38 H 0.116 0.884 39 H 0.102 0.898 40 H 0.154 0.846 41 H 0.091 0.909 42 H 0.222 0.778 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.194 -4.327 59.991 60.147 hybrid contribution 1.210 -0.125 -1.252 1.745 sum 1.403 -4.452 58.739 58.924 Atomic orbital electron populations 1.22166 0.94893 1.02905 1.02133 1.21676 0.95015 0.96790 0.84216 0.92308 1.23105 1.05525 0.90436 0.96077 1.23737 0.90898 0.97728 0.88897 0.79936 1.46991 1.25196 1.08252 1.29575 1.26871 0.86833 0.83739 0.81319 0.71764 1.28383 0.95618 1.11179 0.96731 1.69622 1.01746 1.45229 0.98459 0.84301 0.83479 0.66561 0.82291 1.17807 1.17590 1.13609 1.23173 0.95766 0.91804 0.94173 1.48022 1.52562 1.31031 1.04005 1.17928 0.77468 0.82999 0.81662 1.90565 1.45996 1.29653 1.84149 1.18089 1.07559 1.18310 0.95908 1.20802 0.94071 0.93273 0.96694 1.20655 1.03135 1.09161 0.96052 1.18866 0.96729 0.98779 0.92313 1.71594 1.14853 1.13875 1.30200 1.71468 1.21849 1.28062 1.30264 1.18518 0.83581 0.84723 0.85803 1.41907 1.29543 1.51905 1.18576 1.90417 1.64708 1.76982 1.34412 1.19728 1.01971 1.10006 0.98058 1.20107 0.96405 0.94199 0.92740 0.91028 0.88817 0.96035 0.84179 0.86864 0.70853 0.79656 0.88439 0.89780 0.84615 0.90881 0.77789 0.77888 0.93546 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.06 71.98 0.65 -1.63 16 2 C 0.13 1.49 3.49 45.35 0.16 1.65 16 3 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.11 0.76 6.11 31.79 0.19 0.96 16 5 C 0.09 -0.89 3.69 46.38 0.17 -0.72 16 6 H 0.18 -2.83 8.13 -2.38 -0.02 -2.85 16 7 N -0.51 9.69 5.28 -316.37 -1.67 8.02 16 8 C 0.40 -8.90 9.98 84.04 0.84 -8.06 16 9 H 0.27 -8.01 7.83 -2.91 -0.02 -8.04 16 10 C -0.08 1.59 5.50 84.86 0.47 2.06 16 11 N -0.53 8.86 13.06 21.65 0.28 9.14 16 12 Si 1.02 -14.25 29.55 68.60 2.03 -12.23 16 13 H -0.25 1.56 7.11 99.48 0.71 2.27 16 14 H -0.25 2.58 7.11 99.48 0.71 3.29 16 15 H -0.21 3.03 7.11 99.48 0.71 3.73 16 16 C 0.07 0.65 4.72 86.86 0.41 1.06 16 17 N -0.62 -14.12 3.08 -791.21 -2.44 -16.56 16 18 C 0.60 25.24 7.40 86.83 0.64 25.88 16 19 O -0.62 -30.89 15.67 -3.83 -0.06 -30.95 16 20 C -0.39 -20.43 5.71 -20.01 -0.11 -20.54 16 21 C -0.03 -1.33 7.89 22.48 0.18 -1.15 16 22 C -0.27 -17.29 9.47 22.57 0.21 -17.08 16 23 C 0.10 7.45 6.67 39.33 0.26 7.71 16 24 N -0.48 -42.18 10.78 -52.01 -0.56 -42.74 16 25 N -0.64 -53.12 10.04 -184.78 -1.85 -54.98 16 26 C 0.58 46.41 8.92 179.06 1.60 48.00 16 27 N -0.85 -51.62 8.88 -184.77 -1.64 -53.26 16 28 O -0.77 -69.40 17.48 -3.91 -0.07 -69.47 16 29 C -0.27 -20.05 9.99 22.57 0.23 -19.82 16 30 C -0.01 -0.77 9.57 22.47 0.22 -0.56 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.02 0.56 6.86 -2.39 -0.02 0.55 16 34 H 0.14 -1.80 7.83 -2.38 -0.02 -1.82 16 35 H 0.11 -1.19 7.99 -2.39 -0.02 -1.20 16 36 H 0.45 -9.36 7.71 -92.71 -0.71 -10.08 16 37 H 0.38 -6.78 8.31 -92.71 -0.77 -7.55 16 38 H 0.10 1.35 6.16 -2.39 -0.01 1.34 16 39 H 0.08 0.61 7.27 -2.38 -0.02 0.60 16 40 H 0.14 4.68 4.57 -2.91 -0.01 4.66 16 41 H 0.07 4.83 7.37 -2.91 -0.02 4.81 16 42 H 0.39 20.71 8.93 -92.71 -0.83 19.88 16 43 H 0.39 20.87 8.93 -92.71 -0.83 20.05 16 44 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.08 4.79 7.87 -2.91 -0.02 4.77 16 Total: -1.00 -203.92 381.54 -1.16 -205.07 By element: Atomic # 1 Polarization: 41.48 SS G_CDS: -1.29 Total: 40.19 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 6.11 Total: 17.76 kcal Atomic # 7 Polarization: -142.50 SS G_CDS: -7.88 Total: -150.38 kcal Atomic # 8 Polarization: -100.29 SS G_CDS: -0.13 Total: -100.42 kcal Atomic # 14 Polarization: -14.25 SS G_CDS: 2.03 Total: -12.23 kcal Total: -203.92 -1.16 -205.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989839241.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.796 kcal (2) G-P(sol) polarization free energy of solvation -203.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -205.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds