Wall clock time and date at job start Wed Apr 1 2020 05:03:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08996 * 110.00131 * 2 1
4 4 C 1.54326 * 109.88380 * 238.90607 * 2 1 3
5 5 C 1.55157 * 102.94427 * 218.39370 * 4 2 1
6 6 H 1.09006 * 111.00420 * 277.39061 * 5 4 2
7 7 N 1.46495 * 111.00665 * 153.57506 * 5 4 2
8 8 C 1.36938 * 119.99964 * 158.17764 * 7 5 4
9 9 H 1.07999 * 120.00320 * 359.97438 * 8 7 5
10 10 C 1.38814 * 119.99946 * 179.72536 * 8 7 5
11 11 N 1.31621 * 119.99634 * 0.27378 * 10 8 7
12 12 Si 1.86799 * 120.00128 * 180.27694 * 10 8 7
13 13 H 1.48497 * 109.47155 * 59.99616 * 12 10 8
14 14 H 1.48502 * 109.47204 * 179.97438 * 12 10 8
15 15 H 1.48501 * 109.46769 * 299.99904 * 12 10 8
16 16 C 1.54916 * 101.61722 * 35.47834 * 5 4 2
17 17 N 1.47026 * 109.88154 * 121.09881 * 2 1 3
18 18 C 1.34776 * 125.64635 * 298.41424 * 17 2 1
19 19 O 1.21529 * 120.00145 * 354.21718 * 18 17 2
20 20 C 1.48004 * 119.99690 * 174.22241 * 18 17 2
21 21 C 1.39645 * 119.95233 * 335.16308 * 20 18 17
22 22 C 1.37667 * 120.04471 * 179.72390 * 21 20 18
23 23 C 1.40035 * 119.94815 * 0.57624 * 22 21 20
24 24 N 1.36256 * 120.04261 * 179.67704 * 23 22 21
25 25 N 1.28990 * 119.99923 * 0.02562 * 24 23 22
26 26 C 1.34781 * 119.99977 * 179.97438 * 25 24 23
27 27 N 1.34771 * 119.99983 * 179.97438 * 26 25 24
28 28 O 1.21565 * 119.99816 * 359.97438 * 26 25 24
29 29 C 1.40038 * 119.91293 * 359.69999 * 23 22 21
30 30 C 1.37659 * 119.95342 * 359.97438 * 29 23 22
31 31 H 1.08998 * 109.47527 * 181.09093 * 1 2 3
32 32 H 1.09001 * 109.47484 * 301.09378 * 1 2 3
33 33 H 1.08997 * 109.47073 * 61.09406 * 1 2 3
34 34 H 1.08998 * 110.72076 * 100.02532 * 4 2 1
35 35 H 1.09008 * 110.71849 * 336.75000 * 4 2 1
36 36 H 0.96998 * 119.99993 * 338.17722 * 7 5 4
37 37 H 0.97004 * 119.99803 * 179.97438 * 11 10 8
38 38 H 1.08998 * 110.35988 * 81.85229 * 16 5 4
39 39 H 1.08995 * 110.36925 * 204.17084 * 16 5 4
40 40 H 1.07998 * 119.98339 * 0.02562 * 21 20 18
41 41 H 1.07996 * 120.02454 * 180.24716 * 22 21 20
42 42 H 0.96997 * 120.00623 * 0.02562 * 27 26 25
43 43 H 0.97008 * 120.00106 * 179.97438 * 27 26 25
44 44 H 1.07997 * 120.02673 * 179.97438 * 29 23 22
45 45 H 1.07995 * 119.98148 * 180.02562 * 30 29 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0242 0.0000
4 6 2.0548 -0.7495 -1.2427
5 6 3.2876 -1.5143 -0.6924
6 1 4.1656 -0.8691 -0.6610
7 7 3.5531 -2.7196 -1.4817
8 6 4.8007 -3.2839 -1.4710
9 1 5.5891 -2.8402 -0.8811
10 6 5.0508 -4.4292 -2.2144
11 7 4.0902 -4.9697 -2.9337
12 14 6.7507 -5.2035 -2.1937
13 1 7.0998 -5.5942 -0.8043
14 1 6.7566 -6.4079 -3.0625
15 1 7.7468 -4.2241 -2.6976
16 6 2.8155 -1.8795 0.7371
17 7 2.0300 -0.7141 1.1839
18 6 1.8070 -0.3624 2.4657
19 8 1.2317 0.6777 2.7191
20 6 2.2628 -1.2427 3.5647
21 6 2.4369 -2.6094 3.3366
22 6 2.8663 -3.4291 4.3559
23 6 3.1169 -2.8934 5.6253
24 7 3.5357 -3.7040 6.6372
25 7 3.7019 -4.9657 6.4262
26 6 4.1166 -5.7674 7.4271
27 7 4.2898 -7.0857 7.2067
28 8 4.3344 -5.3015 8.5286
29 6 2.9362 -1.5236 5.8533
30 6 2.5132 -0.7063 4.8295
31 1 -0.3634 -1.0274 0.0196
32 1 -0.3634 0.5307 0.8800
33 1 -0.3633 0.4967 -0.8996
34 1 2.3529 -0.0459 -2.0201
35 1 1.3051 -1.4460 -1.6183
36 1 2.8452 -3.1179 -2.0118
37 1 4.2650 -5.7698 -3.4535
38 1 2.1899 -2.7718 0.7136
39 1 3.6730 -2.0335 1.3921
40 1 2.2392 -3.0229 2.3587
41 1 3.0046 -4.4853 4.1782
42 1 4.1164 -7.4575 6.3278
43 1 4.5886 -7.6627 7.9270
44 1 3.1286 -1.1086 6.8316
45 1 2.3740 0.3502 5.0048
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989839243.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:03:24
Heat of formation + Delta-G solvation = 52.232284 kcal
Electronic energy + Delta-G solvation = -29408.567757 eV
Core-core repulsion = 25235.757074 eV
Total energy + Delta-G solvation = -4172.810683 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 2.83 seconds
Orbital eigenvalues (eV)
-40.79964 -40.29554 -39.15567 -37.58924 -36.53655 -34.34231 -34.07679 -32.74269
-31.53747 -31.42257 -30.94821 -28.57797 -27.62195 -25.74432 -24.24967 -23.65179
-22.86522 -21.84084 -20.47714 -20.36160 -19.36402 -18.52504 -17.54946 -17.33528
-17.22829 -16.48909 -16.27792 -15.88528 -15.84157 -15.13476 -14.73977 -14.58941
-14.36579 -14.20842 -13.85606 -13.80851 -13.67108 -13.47224 -13.30669 -12.82327
-12.65379 -12.49371 -12.23609 -11.92296 -11.83052 -11.62588 -11.24698 -11.13034
-11.01252 -10.79524 -10.75354 -10.41835 -10.14999 -10.11143 -9.98365 -9.84516
-9.39199 -9.38221 -9.12148 -9.06880 -8.53060 -7.20612 -5.95131 -3.26743
-0.86058 1.02773 1.19927 2.40028 2.64733 2.92771 3.14658 3.33145
3.38990 3.39300 3.59626 4.00391 4.29287 4.44530 4.47903 4.57154
4.85664 4.91012 4.93082 5.02960 5.13190 5.19495 5.37865 5.43357
5.52204 5.57964 5.63377 5.66752 5.72221 5.82533 5.86627 5.96984
5.99723 6.02625 6.06344 6.20644 6.29334 6.30856 6.33907 6.39510
6.50815 6.69777 6.87056 7.11360 7.53193 7.56851 8.09582 8.15743
8.22204 9.34479 9.86475 10.21432 11.26419
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.006917 B = 0.003546 C = 0.002449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4046.991799 B = 7895.113587 C =11429.958074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.138 3.862
3 H 0.076 0.924
4 C -0.137 4.137
5 C 0.172 3.828
6 H 0.068 0.932
7 N -0.710 5.710
8 C -0.253 4.253
9 H 0.072 0.928
10 C -0.004 4.004
11 N -0.928 5.928
12 Si 0.907 3.093
13 H -0.284 1.284
14 H -0.290 1.290
15 H -0.284 1.284
16 C 0.065 3.935
17 N -0.600 5.600
18 C 0.565 3.435
19 O -0.539 6.539
20 C -0.065 4.065
21 C -0.111 4.111
22 C -0.065 4.065
23 C 0.017 3.983
24 N -0.066 5.066
25 N -0.320 5.320
26 C 0.652 3.348
27 N -0.820 5.820
28 O -0.556 6.556
29 C -0.031 4.031
30 C -0.084 4.084
31 H 0.057 0.943
32 H 0.063 0.937
33 H 0.065 0.935
34 H 0.081 0.919
35 H 0.079 0.921
36 H 0.388 0.612
37 H 0.258 0.742
38 H 0.075 0.925
39 H 0.075 0.925
40 H 0.156 0.844
41 H 0.151 0.849
42 H 0.411 0.589
43 H 0.418 0.582
44 H 0.149 0.851
45 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.100 3.130 12.859 14.184
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.035 3.965
3 H 0.094 0.906
4 C -0.176 4.176
5 C 0.059 3.941
6 H 0.086 0.914
7 N -0.350 5.350
8 C -0.384 4.384
9 H 0.090 0.910
10 C -0.201 4.201
11 N -0.575 5.575
12 Si 0.738 3.262
13 H -0.211 1.211
14 H -0.216 1.216
15 H -0.211 1.211
16 C -0.061 4.061
17 N -0.332 5.332
18 C 0.353 3.647
19 O -0.417 6.417
20 C -0.071 4.071
21 C -0.130 4.130
22 C -0.089 4.089
23 C -0.091 4.091
24 N 0.040 4.960
25 N -0.222 5.222
26 C 0.348 3.652
27 N -0.389 5.389
28 O -0.426 6.426
29 C -0.054 4.054
30 C -0.103 4.103
31 H 0.076 0.924
32 H 0.083 0.917
33 H 0.084 0.916
34 H 0.099 0.901
35 H 0.098 0.902
36 H 0.222 0.778
37 H 0.068 0.932
38 H 0.093 0.907
39 H 0.094 0.906
40 H 0.173 0.827
41 H 0.168 0.832
42 H 0.241 0.759
43 H 0.251 0.749
44 H 0.166 0.834
45 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -5.014 3.816 13.931 15.290
hybrid contribution 0.789 -1.381 -0.382 1.636
sum -4.225 2.435 13.550 14.400
Atomic orbital electron populations
1.22129 0.94914 1.02332 1.02537 1.21571 0.94291 0.96323 0.84280
0.90606 1.23046 0.99102 0.99719 0.95742 1.21316 0.94788 0.89586
0.88388 0.91418 1.42306 1.11672 1.27738 1.53268 1.19193 0.88327
1.06624 1.24254 0.90981 1.24754 0.97727 0.98247 0.99400 1.69644
1.31676 1.23059 1.33115 0.86282 0.83796 0.78709 0.77461 1.21103
1.21581 1.21084 1.23869 0.94448 0.87454 1.00315 1.48555 1.51240
1.29054 1.04379 1.17921 0.79908 0.85238 0.81616 1.90759 1.43243
1.24305 1.83443 1.20439 0.98000 0.94152 0.94504 1.22061 0.97328
0.92507 1.01079 1.22188 0.93226 1.01682 0.91769 1.19301 1.05584
0.93550 0.90618 1.72568 0.93002 1.00771 1.29660 1.72259 1.14172
1.02020 1.33743 1.17555 0.78734 0.84136 0.84726 1.42736 1.71615
1.06721 1.17799 1.90971 1.50490 1.75151 1.26012 1.21180 0.93957
0.90267 1.00031 1.21201 0.97309 1.01162 0.90639 0.92391 0.91749
0.91574 0.90082 0.90208 0.77770 0.93192 0.90696 0.90626 0.82661
0.83154 0.75930 0.74897 0.83361 0.83296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 40.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.95 9.10 37.16 0.34 -1.61 16
2 C 0.14 1.82 3.43 -66.95 -0.23 1.59 16
3 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16
4 C -0.14 -1.91 6.12 -24.89 -0.15 -2.06 16
5 C 0.17 2.89 3.70 -65.78 -0.24 2.65 16
6 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16
7 N -0.71 -15.42 5.26 -51.35 -0.27 -15.69 16
8 C -0.25 -6.28 9.97 -15.06 -0.15 -6.43 16
9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16
10 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16
11 N -0.93 -25.72 13.06 55.49 0.72 -25.00 16
12 Si 0.91 20.75 29.55 -169.99 -5.02 15.73 16
13 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
14 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16
15 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16
16 C 0.06 0.95 4.69 -2.50 -0.01 0.94 16
17 N -0.60 -8.36 3.07 -164.03 -0.50 -8.86 16
18 C 0.56 8.09 7.39 -12.26 -0.09 8.00 16
19 O -0.54 -8.89 15.86 5.34 0.08 -8.80 16
20 C -0.07 -0.80 5.68 -104.84 -0.59 -1.40 16
21 C -0.11 -1.29 8.05 -39.26 -0.32 -1.61 16
22 C -0.06 -0.73 9.47 -39.12 -0.37 -1.10 16
23 C 0.02 0.19 6.67 -84.55 -0.56 -0.37 16
24 N -0.07 -0.87 10.78 32.21 0.35 -0.52 16
25 N -0.32 -4.03 10.04 27.63 0.28 -3.75 16
26 C 0.65 8.24 8.92 -86.92 -0.78 7.47 16
27 N -0.82 -6.20 8.88 27.63 0.25 -5.96 16
28 O -0.56 -9.09 17.48 5.31 0.09 -9.00 16
29 C -0.03 -0.30 9.99 -39.12 -0.39 -0.69 16
30 C -0.08 -0.88 9.57 -39.26 -0.38 -1.25 16
31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
32 H 0.06 0.85 7.10 -51.93 -0.37 0.49 16
33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
35 H 0.08 1.12 7.71 -51.92 -0.40 0.72 16
36 H 0.39 9.01 7.73 -40.82 -0.32 8.70 16
37 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16
38 H 0.08 1.13 6.81 -51.93 -0.35 0.77 16
39 H 0.08 1.12 6.85 -51.93 -0.36 0.76 16
40 H 0.16 1.83 4.60 -52.49 -0.24 1.59 16
41 H 0.15 1.58 7.37 -52.49 -0.39 1.19 16
42 H 0.41 2.14 8.93 -40.82 -0.36 1.78 16
43 H 0.42 2.31 8.93 -40.82 -0.36 1.94 16
44 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16
45 H 0.15 1.40 7.83 -52.49 -0.41 0.99 16
LS Contribution 382.26 15.07 5.76 5.76
Total: -1.00 -32.53 382.26 -7.93 -40.46
By element:
Atomic # 1 Polarization: 17.36 SS G_CDS: -5.64 Total: 11.72 kcal
Atomic # 6 Polarization: 7.95 SS G_CDS: -4.02 Total: 3.93 kcal
Atomic # 7 Polarization: -60.61 SS G_CDS: 0.82 Total: -59.79 kcal
Atomic # 8 Polarization: -17.98 SS G_CDS: 0.18 Total: -17.80 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -32.53 -7.93 -40.46 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989839243.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.689 kcal
(2) G-P(sol) polarization free energy of solvation -32.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.162 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.456 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.232 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.83 seconds