Wall clock time and date at job start Wed Apr 1 2020 05:03:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08996 * 110.00131 * 2 1
4 4 C 1.54326 * 109.88380 * 238.90607 * 2 1 3
5 5 C 1.55157 * 102.94427 * 218.39370 * 4 2 1
6 6 H 1.09006 * 111.00420 * 277.39061 * 5 4 2
7 7 N 1.46495 * 111.00665 * 153.57506 * 5 4 2
8 8 C 1.36938 * 119.99964 * 158.17764 * 7 5 4
9 9 H 1.07999 * 120.00320 * 359.97438 * 8 7 5
10 10 C 1.38814 * 119.99946 * 179.72536 * 8 7 5
11 11 N 1.31621 * 119.99634 * 0.27378 * 10 8 7
12 12 Si 1.86799 * 120.00128 * 180.27694 * 10 8 7
13 13 H 1.48497 * 109.47155 * 59.99616 * 12 10 8
14 14 H 1.48502 * 109.47204 * 179.97438 * 12 10 8
15 15 H 1.48501 * 109.46769 * 299.99904 * 12 10 8
16 16 C 1.54916 * 101.61722 * 35.47834 * 5 4 2
17 17 N 1.47026 * 109.88154 * 121.09881 * 2 1 3
18 18 C 1.34776 * 125.64635 * 298.41424 * 17 2 1
19 19 O 1.21529 * 120.00145 * 354.21718 * 18 17 2
20 20 C 1.48004 * 119.99690 * 174.22241 * 18 17 2
21 21 C 1.39645 * 119.95233 * 335.16308 * 20 18 17
22 22 C 1.37667 * 120.04471 * 179.72390 * 21 20 18
23 23 C 1.40035 * 119.94815 * 0.57624 * 22 21 20
24 24 N 1.36256 * 120.04261 * 179.67704 * 23 22 21
25 25 N 1.28990 * 119.99923 * 0.02562 * 24 23 22
26 26 C 1.34781 * 119.99977 * 179.97438 * 25 24 23
27 27 N 1.34771 * 119.99983 * 179.97438 * 26 25 24
28 28 O 1.21565 * 119.99816 * 359.97438 * 26 25 24
29 29 C 1.40038 * 119.91293 * 359.69999 * 23 22 21
30 30 C 1.37659 * 119.95342 * 359.97438 * 29 23 22
31 31 H 1.08998 * 109.47527 * 181.09093 * 1 2 3
32 32 H 1.09001 * 109.47484 * 301.09378 * 1 2 3
33 33 H 1.08997 * 109.47073 * 61.09406 * 1 2 3
34 34 H 1.08998 * 110.72076 * 100.02532 * 4 2 1
35 35 H 1.09008 * 110.71849 * 336.75000 * 4 2 1
36 36 H 0.96998 * 119.99993 * 338.17722 * 7 5 4
37 37 H 0.97004 * 119.99803 * 179.97438 * 11 10 8
38 38 H 1.08998 * 110.35988 * 81.85229 * 16 5 4
39 39 H 1.08995 * 110.36925 * 204.17084 * 16 5 4
40 40 H 1.07998 * 119.98339 * 0.02562 * 21 20 18
41 41 H 1.07996 * 120.02454 * 180.24716 * 22 21 20
42 42 H 0.96997 * 120.00623 * 0.02562 * 27 26 25
43 43 H 0.97008 * 120.00106 * 179.97438 * 27 26 25
44 44 H 1.07997 * 120.02673 * 179.97438 * 29 23 22
45 45 H 1.07995 * 119.98148 * 180.02562 * 30 29 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9028 1.0242 0.0000
4 6 2.0548 -0.7495 -1.2427
5 6 3.2876 -1.5143 -0.6924
6 1 4.1656 -0.8691 -0.6610
7 7 3.5531 -2.7196 -1.4817
8 6 4.8007 -3.2839 -1.4710
9 1 5.5891 -2.8402 -0.8811
10 6 5.0508 -4.4292 -2.2144
11 7 4.0902 -4.9697 -2.9337
12 14 6.7507 -5.2035 -2.1937
13 1 7.0998 -5.5942 -0.8043
14 1 6.7566 -6.4079 -3.0625
15 1 7.7468 -4.2241 -2.6976
16 6 2.8155 -1.8795 0.7371
17 7 2.0300 -0.7141 1.1839
18 6 1.8070 -0.3624 2.4657
19 8 1.2317 0.6777 2.7191
20 6 2.2628 -1.2427 3.5647
21 6 2.4369 -2.6094 3.3366
22 6 2.8663 -3.4291 4.3559
23 6 3.1169 -2.8934 5.6253
24 7 3.5357 -3.7040 6.6372
25 7 3.7019 -4.9657 6.4262
26 6 4.1166 -5.7674 7.4271
27 7 4.2898 -7.0857 7.2067
28 8 4.3344 -5.3015 8.5286
29 6 2.9362 -1.5236 5.8533
30 6 2.5132 -0.7063 4.8295
31 1 -0.3634 -1.0274 0.0196
32 1 -0.3634 0.5307 0.8800
33 1 -0.3633 0.4967 -0.8996
34 1 2.3529 -0.0459 -2.0201
35 1 1.3051 -1.4460 -1.6183
36 1 2.8452 -3.1179 -2.0118
37 1 4.2650 -5.7698 -3.4535
38 1 2.1899 -2.7718 0.7136
39 1 3.6730 -2.0335 1.3921
40 1 2.2392 -3.0229 2.3587
41 1 3.0046 -4.4853 4.1782
42 1 4.1164 -7.4575 6.3278
43 1 4.5886 -7.6627 7.9270
44 1 3.1286 -1.1086 6.8316
45 1 2.3740 0.3502 5.0048
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989839243.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:03:23
Heat of formation + Delta-G solvation = 24.197227 kcal
Electronic energy + Delta-G solvation = -29409.783448 eV
Core-core repulsion = 25235.757074 eV
Total energy + Delta-G solvation = -4174.026374 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-41.55485 -40.04827 -39.05068 -38.46103 -37.83102 -35.87899 -34.92519 -33.53062
-32.99426 -31.75761 -30.71787 -30.32051 -28.41988 -27.11910 -26.60602 -24.03553
-23.21708 -22.44782 -21.98017 -21.62262 -20.10692 -19.77855 -19.02963 -18.03375
-17.88163 -17.69922 -17.51970 -16.70697 -16.37045 -15.84328 -15.61457 -15.48400
-14.97072 -14.90225 -14.85124 -14.72402 -14.59670 -14.49657 -14.41409 -14.06836
-13.77136 -13.43747 -13.29338 -13.13947 -12.93978 -12.90487 -12.80214 -12.32889
-12.10984 -12.04103 -11.94773 -11.80252 -11.46416 -11.09722 -11.00559 -10.96138
-10.34446 -10.16762 -9.97206 -9.53866 -9.14426 -8.29924 -7.55739 -5.39391
-1.77589 0.50269 0.72483 1.15009 1.32881 1.59036 1.63903 1.88899
2.16608 2.30148 2.58804 2.63962 2.96517 3.24096 3.29052 3.54252
3.59688 3.80805 3.84946 4.03527 4.11152 4.36684 4.37786 4.49534
4.53611 4.58881 4.69315 4.71996 4.77068 4.80683 4.88449 4.95863
5.15876 5.21281 5.26286 5.33945 5.37455 5.57604 5.79988 5.88296
6.07882 6.31564 6.36008 6.43101 6.75454 6.84128 6.99431 7.10344
7.51564 7.73425 8.17307 8.61194 9.94771
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.006917 B = 0.003546 C = 0.002449
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 4046.991799 B = 7895.113587 C =11429.958074
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.127 3.873
3 H 0.073 0.927
4 C -0.114 4.114
5 C 0.092 3.908
6 H 0.188 0.812
7 N -0.510 5.510
8 C 0.397 3.603
9 H 0.270 0.730
10 C -0.084 4.084
11 N -0.528 5.528
12 Si 1.023 2.977
13 H -0.253 1.253
14 H -0.256 1.256
15 H -0.211 1.211
16 C 0.079 3.921
17 N -0.623 5.623
18 C 0.600 3.400
19 O -0.619 6.619
20 C -0.390 4.390
21 C -0.024 4.024
22 C -0.268 4.268
23 C 0.096 3.904
24 N -0.478 5.478
25 N -0.638 5.638
26 C 0.576 3.424
27 N -0.852 5.852
28 O -0.768 6.768
29 C -0.273 4.273
30 C -0.012 4.012
31 H 0.056 0.944
32 H 0.021 0.979
33 H 0.094 0.906
34 H 0.142 0.858
35 H 0.111 0.889
36 H 0.446 0.554
37 H 0.383 0.617
38 H 0.080 0.920
39 H 0.094 0.906
40 H 0.133 0.867
41 H 0.071 0.929
42 H 0.394 0.606
43 H 0.392 0.608
44 H 0.047 0.953
45 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.354 0.402 -61.392 61.960
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.024 3.976
3 H 0.091 0.909
4 C -0.152 4.152
5 C -0.011 4.011
6 H 0.205 0.795
7 N -0.102 5.102
8 C 0.214 3.786
9 H 0.286 0.714
10 C -0.321 4.321
11 N -0.153 5.153
12 Si 0.836 3.164
13 H -0.177 1.177
14 H -0.179 1.179
15 H -0.133 1.133
16 C -0.045 4.045
17 N -0.358 5.358
18 C 0.400 3.600
19 O -0.504 6.504
20 C -0.399 4.399
21 C -0.046 4.046
22 C -0.291 4.291
23 C -0.067 4.067
24 N -0.304 5.304
25 N -0.517 5.517
26 C 0.274 3.726
27 N -0.419 5.419
28 O -0.664 6.664
29 C -0.297 4.297
30 C -0.034 4.034
31 H 0.075 0.925
32 H 0.040 0.960
33 H 0.113 0.887
34 H 0.160 0.840
35 H 0.129 0.871
36 H 0.290 0.710
37 H 0.203 0.797
38 H 0.097 0.903
39 H 0.112 0.888
40 H 0.150 0.850
41 H 0.089 0.911
42 H 0.222 0.778
43 H 0.221 0.779
44 H 0.065 0.935
45 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 7.826 1.139 -60.253 60.770
hybrid contribution -0.489 -1.364 1.241 1.908
sum 7.337 -0.225 -59.012 59.467
Atomic orbital electron populations
1.22139 0.95901 1.01995 1.02170 1.21713 0.94368 0.97324 0.84188
0.90898 1.23138 0.95346 1.00626 0.96095 1.23747 1.04568 0.84152
0.88665 0.79496 1.47014 1.12304 1.20643 1.30259 1.26917 0.87998
0.83880 0.79827 0.71394 1.28461 1.08971 0.97800 0.96886 1.69633
1.34438 1.12802 0.98443 0.84274 0.69602 0.80172 0.82328 1.17703
1.17932 1.13319 1.23058 0.97398 0.89743 0.94279 1.48028 1.54402
1.29312 1.04015 1.17893 0.76804 0.83682 0.81637 1.90561 1.47026
1.28708 1.84131 1.18112 1.33768 0.94121 0.93915 1.20749 0.95461
0.91681 0.96671 1.20647 1.16115 0.97228 0.95128 1.18870 1.03415
0.92716 0.91723 1.71588 1.24700 1.02980 1.31115 1.71475 1.48039
1.02316 1.29905 1.18513 0.83300 0.84988 0.85780 1.41909 1.78548
1.06254 1.15219 1.90417 1.67600 1.77140 1.31289 1.19735 1.19626
0.93374 0.96964 1.20136 0.95007 0.95545 0.92754 0.92518 0.95990
0.88694 0.84021 0.87068 0.70991 0.79713 0.90250 0.88761 0.84970
0.91097 0.77806 0.77859 0.93464 0.90057
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.68 9.10 71.98 0.65 -2.02 16
2 C 0.13 1.47 3.43 45.34 0.16 1.63 16
3 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16
4 C -0.11 0.79 6.12 31.78 0.19 0.98 16
5 C 0.09 -0.95 3.70 46.39 0.17 -0.78 16
6 H 0.19 -3.17 8.11 -2.38 -0.02 -3.19 16
7 N -0.51 9.78 5.26 -316.36 -1.66 8.11 16
8 C 0.40 -9.21 9.97 84.03 0.84 -8.38 16
9 H 0.27 -8.59 7.83 -2.91 -0.02 -8.62 16
10 C -0.08 1.66 5.50 84.86 0.47 2.12 16
11 N -0.53 8.74 13.06 21.65 0.28 9.02 16
12 Si 1.02 -15.07 29.55 68.60 2.03 -13.04 16
13 H -0.25 1.84 7.11 99.48 0.71 2.55 16
14 H -0.26 2.66 7.11 99.48 0.71 3.37 16
15 H -0.21 3.25 7.11 99.48 0.71 3.96 16
16 C 0.08 0.70 4.69 86.85 0.41 1.11 16
17 N -0.62 -14.14 3.07 -791.15 -2.43 -16.57 16
18 C 0.60 25.27 7.39 86.83 0.64 25.92 16
19 O -0.62 -30.83 15.86 -3.81 -0.06 -30.89 16
20 C -0.39 -20.58 5.68 -20.01 -0.11 -20.70 16
21 C -0.02 -1.21 8.05 22.47 0.18 -1.03 16
22 C -0.27 -17.59 9.47 22.57 0.21 -17.38 16
23 C 0.10 7.47 6.67 39.33 0.26 7.73 16
24 N -0.48 -42.26 10.78 -52.01 -0.56 -42.82 16
25 N -0.64 -53.54 10.04 -184.76 -1.85 -55.39 16
26 C 0.58 46.67 8.92 179.05 1.60 48.26 16
27 N -0.85 -51.97 8.88 -184.77 -1.64 -53.61 16
28 O -0.77 -69.55 17.48 -3.92 -0.07 -69.62 16
29 C -0.27 -20.07 9.99 22.57 0.23 -19.85 16
30 C -0.01 -0.77 9.57 22.48 0.22 -0.55 16
31 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
32 H 0.02 0.61 7.10 -2.39 -0.02 0.59 16
33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16
34 H 0.14 -1.92 8.14 -2.39 -0.02 -1.94 16
35 H 0.11 -1.10 7.71 -2.38 -0.02 -1.12 16
36 H 0.45 -9.11 7.73 -92.71 -0.72 -9.83 16
37 H 0.38 -6.62 8.31 -92.71 -0.77 -7.39 16
38 H 0.08 0.69 6.81 -2.39 -0.02 0.67 16
39 H 0.09 1.27 6.85 -2.39 -0.02 1.26 16
40 H 0.13 4.73 4.60 -2.91 -0.01 4.71 16
41 H 0.07 4.77 7.37 -2.91 -0.02 4.75 16
42 H 0.39 20.91 8.93 -92.71 -0.83 20.08 16
43 H 0.39 21.01 8.93 -92.70 -0.83 20.19 16
44 H 0.05 3.59 8.06 -2.91 -0.02 3.57 16
45 H 0.08 4.91 7.83 -2.91 -0.02 4.89 16
Total: -1.00 -205.42 382.26 -1.14 -206.57
By element:
Atomic # 1 Polarization: 42.44 SS G_CDS: -1.29 Total: 41.15 kcal
Atomic # 6 Polarization: 10.97 SS G_CDS: 6.11 Total: 17.08 kcal
Atomic # 7 Polarization: -143.39 SS G_CDS: -7.86 Total: -151.25 kcal
Atomic # 8 Polarization: -100.37 SS G_CDS: -0.13 Total: -100.50 kcal
Atomic # 14 Polarization: -15.07 SS G_CDS: 2.03 Total: -13.04 kcal
Total: -205.42 -1.14 -206.57 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989839243.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 230.766 kcal
(2) G-P(sol) polarization free energy of solvation -205.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.341 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.144 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -206.569 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds