Wall clock time and date at job start Wed Apr 1 2020 05:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58429 * 2 1 4 4 C 1.53197 * 109.58476 * 120.28035 * 2 1 3 5 5 H 1.08996 * 109.49834 * 294.51713 * 4 2 1 6 6 N 1.46502 * 109.49546 * 54.58146 * 4 2 1 7 7 C 1.34776 * 119.99613 * 204.99855 * 6 4 2 8 8 O 1.21640 * 120.00092 * 359.97438 * 7 6 4 9 9 C 1.47058 * 119.99847 * 180.02562 * 7 6 4 10 10 C 1.35877 * 125.43195 * 179.69265 * 9 7 6 11 11 C 1.41585 * 107.74208 * 179.90883 * 10 9 7 12 12 C 1.40121 * 133.34902 * 180.15149 * 11 10 9 13 13 C 1.36619 * 119.81119 * 180.24474 * 12 11 10 14 14 F 1.35093 * 119.71710 * 180.02562 * 13 12 11 15 15 C 1.39124 * 120.56000 * 0.02562 * 13 12 11 16 16 C 1.37661 * 120.62852 * 359.97207 * 15 13 12 17 17 C 1.39216 * 119.84136 * 0.02562 * 16 15 13 18 18 N 1.37571 * 133.14606 * 180.02562 * 17 16 15 19 19 H 0.96993 * 125.61434 * 359.96288 * 18 17 16 20 20 C 1.53046 * 109.31057 * 174.56543 * 4 2 1 21 21 C 1.53043 * 109.53661 * 298.63413 * 20 4 2 22 22 C 1.53194 * 109.31269 * 61.36833 * 21 20 4 23 23 N 1.46923 * 109.70416 * 239.64044 * 2 1 3 24 24 C 1.36942 * 120.63206 * 6.51206 * 23 2 1 25 25 H 1.08001 * 119.99595 * 330.21223 * 24 23 2 26 26 C 1.38810 * 120.00016 * 150.20582 * 24 23 2 27 27 N 1.31620 * 119.99942 * 344.47828 * 26 24 23 28 28 Si 1.86795 * 119.99872 * 164.47425 * 26 24 23 29 29 H 1.48509 * 109.47049 * 90.00392 * 28 26 24 30 30 H 1.48497 * 109.47148 * 209.99933 * 28 26 24 31 31 H 1.48495 * 109.47222 * 330.00437 * 28 26 24 32 32 H 1.09003 * 109.47171 * 300.00279 * 1 2 3 33 33 H 1.09007 * 109.47043 * 60.00235 * 1 2 3 34 34 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 35 35 H 0.96999 * 120.00424 * 25.00299 * 6 4 2 36 36 H 1.08000 * 126.12451 * 0.03402 * 10 9 7 37 37 H 1.08000 * 120.09534 * 0.26394 * 12 11 10 38 38 H 1.08001 * 119.68303 * 179.97438 * 15 13 12 39 39 H 1.08002 * 120.07897 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.45952 * 58.65404 * 20 4 2 41 41 H 1.08998 * 109.45457 * 178.63361 * 20 4 2 42 42 H 1.08994 * 109.49704 * 181.32117 * 21 20 4 43 43 H 1.09003 * 109.49931 * 301.38596 * 21 20 4 44 44 H 1.08995 * 109.58598 * 65.14619 * 22 21 20 45 45 H 1.09001 * 109.58352 * 185.43467 * 22 21 20 46 46 H 0.97005 * 119.99905 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 1 1.7638 -0.1654 2.1372 6 7 1.4533 -2.0672 1.3084 7 6 1.3302 -2.6951 2.4946 8 8 1.7095 -2.1497 3.5137 9 6 0.7383 -4.0398 2.5568 10 6 0.5671 -4.7736 3.6876 11 6 -0.0344 -6.0010 3.3185 12 6 -0.4418 -7.1288 4.0433 13 6 -1.0019 -8.1901 3.3902 14 9 -1.3944 -9.2763 4.0910 15 6 -1.1714 -8.1616 2.0096 16 6 -0.7787 -7.0641 1.2773 17 6 -0.2055 -5.9708 1.9209 18 7 0.2745 -4.7615 1.4741 19 1 0.2850 -4.4642 0.5509 20 6 3.5678 -0.8433 1.1730 21 6 3.9604 -1.6609 -0.0598 22 6 3.4686 -0.9436 -1.3210 23 7 2.0254 -0.6991 -1.1935 24 6 1.1585 -1.1153 -2.1685 25 1 0.1446 -1.3839 -1.9107 26 6 1.5827 -1.1918 -3.4879 27 7 2.6926 -0.5889 -3.8584 28 14 0.5786 -2.1503 -4.7378 29 1 -0.4165 -1.2476 -5.3705 30 1 1.4812 -2.7006 -5.7807 31 1 -0.1273 -3.2647 -4.0558 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 1.1513 -2.5023 0.4958 36 1 0.8392 -4.4734 4.6887 37 1 -0.3136 -7.1590 5.1152 38 1 -1.6155 -9.0086 1.5077 39 1 -0.9148 -7.0513 0.2059 40 1 4.0045 0.1528 1.1022 41 1 3.9380 -1.3393 2.0703 42 1 5.0448 -1.7626 -0.0986 43 1 3.5041 -2.6491 -0.0014 44 1 3.9920 0.0063 -1.4287 45 1 3.6599 -1.5674 -2.1941 46 1 2.9888 -0.6420 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993657558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:50 Heat of formation + Delta-G solvation = -4.538074 kcal Electronic energy + Delta-G solvation = -30529.427766 eV Core-core repulsion = 26334.235374 eV Total energy + Delta-G solvation = -4195.192392 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -48.94825 -41.73996 -39.69820 -37.75241 -36.63760 -34.15158 -32.63522 -32.39267 -31.84234 -29.94867 -29.25723 -28.91006 -26.45232 -25.16941 -24.33204 -22.46441 -22.17596 -21.45694 -20.88322 -20.14452 -18.94169 -18.65247 -17.58983 -17.05385 -16.55782 -15.92221 -15.76112 -15.49294 -15.23740 -15.01701 -14.65918 -14.33129 -14.15655 -13.97973 -13.77827 -13.50245 -13.34237 -13.29583 -13.14087 -13.08635 -12.73732 -12.68898 -11.98441 -11.48200 -11.38256 -11.35904 -11.18718 -11.10521 -10.82797 -10.77052 -10.65727 -10.25460 -10.18254 -10.14641 -9.98994 -9.80327 -9.43491 -8.78924 -8.61773 -8.34550 -8.02151 -6.80814 -5.94978 -3.41258 0.49596 1.20107 1.95877 2.73428 3.23256 3.28661 3.29757 3.32453 3.36688 3.52111 4.14062 4.31822 4.36357 4.66940 4.79918 4.95959 5.07414 5.14479 5.18990 5.21106 5.41128 5.44259 5.48688 5.61863 5.70801 5.74947 5.83331 5.96326 5.97355 5.99227 6.09354 6.17645 6.28937 6.33688 6.40943 6.43073 6.50221 6.55455 6.65068 6.77036 6.80941 6.82974 6.92922 7.16379 7.24816 7.53417 7.63396 7.74208 8.27577 8.30260 9.04125 9.67059 10.24727 11.12904 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.003316 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.781258 B = 8441.245334 C =10103.444236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.158 3.842 3 H 0.042 0.958 4 C 0.134 3.866 5 H 0.080 0.920 6 N -0.694 5.694 7 C 0.575 3.425 8 O -0.532 6.532 9 C 0.039 3.961 10 C -0.119 4.119 11 C -0.093 4.093 12 C -0.100 4.100 13 C 0.068 3.932 14 F -0.145 7.145 15 C -0.127 4.127 16 C -0.095 4.095 17 C 0.100 3.900 18 N -0.570 5.570 19 H 0.425 0.575 20 C -0.122 4.122 21 C -0.140 4.140 22 C 0.171 3.829 23 N -0.586 5.586 24 C -0.263 4.263 25 H 0.069 0.931 26 C 0.009 3.991 27 N -0.896 5.896 28 Si 0.899 3.101 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.281 1.281 32 H 0.041 0.959 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.404 0.596 36 H 0.158 0.842 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.019 0.981 45 H 0.085 0.915 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.714 -9.900 10.889 15.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.060 0.940 4 C 0.028 3.972 5 H 0.098 0.902 6 N -0.345 5.345 7 C 0.360 3.640 8 O -0.410 6.410 9 C -0.071 4.071 10 C -0.146 4.146 11 C -0.098 4.098 12 C -0.120 4.120 13 C 0.048 3.952 14 F -0.124 7.124 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.010 4.010 18 N -0.174 5.174 19 H 0.264 0.736 20 C -0.160 4.160 21 C -0.179 4.179 22 C 0.046 3.954 23 N -0.310 5.310 24 C -0.392 4.392 25 H 0.087 0.913 26 C -0.191 4.191 27 N -0.539 5.539 28 Si 0.729 3.271 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.206 1.206 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.240 0.760 36 H 0.175 0.825 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.037 0.963 45 H 0.104 0.896 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.338 -9.376 11.289 15.303 hybrid contribution -0.585 -0.708 -1.597 1.843 sum -4.923 -10.084 9.692 14.828 Atomic orbital electron populations 1.21782 0.95593 1.01233 1.00700 1.20737 0.93342 0.94084 0.86751 0.94009 1.21640 0.93097 0.82251 1.00207 0.90152 1.45939 1.61228 1.18972 1.08326 1.17201 0.79028 0.83303 0.84478 1.90815 1.50237 1.65638 1.34274 1.20449 1.05050 0.94255 0.87377 1.20823 1.03179 0.92302 0.98296 1.17865 1.04367 0.95490 0.92042 1.20254 0.99681 0.91552 1.00476 1.17004 1.03354 0.85003 0.89848 1.91481 1.89225 1.52693 1.78955 1.20805 1.02548 0.99254 0.92083 1.19962 1.00522 0.91027 1.00032 1.18336 1.01177 0.87926 0.93599 1.42102 1.52260 1.13596 1.09485 0.73601 1.21784 0.95182 1.00720 0.98355 1.22140 0.99109 0.99356 0.97322 1.20794 0.83121 0.97279 0.94237 1.44168 1.03080 1.64890 1.18857 1.19096 0.95228 1.38658 0.86222 0.91340 1.25117 0.97722 0.99219 0.97006 1.70018 1.23879 1.43149 1.16876 0.86370 0.79414 0.79868 0.81439 1.21322 1.21570 1.20617 0.94017 0.91628 0.93133 0.75962 0.82460 0.84541 0.84339 0.84724 0.91606 0.92923 0.93281 0.93111 0.96252 0.89648 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.73 37.16 0.29 -1.99 16 2 C 0.16 2.90 3.19 -67.60 -0.22 2.68 16 3 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.13 2.20 2.32 -67.80 -0.16 2.04 16 5 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 6 N -0.69 -10.64 3.46 -54.88 -0.19 -10.83 16 7 C 0.57 8.93 7.77 -12.68 -0.10 8.83 16 8 O -0.53 -9.63 16.50 5.24 0.09 -9.55 16 9 C 0.04 0.53 6.97 -82.29 -0.57 -0.04 16 10 C -0.12 -1.53 10.53 -39.15 -0.41 -1.94 16 11 C -0.09 -1.12 6.16 -106.93 -0.66 -1.78 16 12 C -0.10 -1.08 10.03 -39.46 -0.40 -1.48 16 13 C 0.07 0.73 7.24 -39.84 -0.29 0.44 16 14 F -0.14 -1.61 17.25 2.25 0.04 -1.57 16 15 C -0.13 -1.20 9.99 -39.46 -0.39 -1.60 16 16 C -0.10 -0.93 10.07 -39.43 -0.40 -1.33 16 17 C 0.10 1.17 7.25 -83.95 -0.61 0.56 16 18 N -0.57 -6.73 6.08 -7.34 -0.04 -6.77 16 19 H 0.42 4.47 8.12 -40.82 -0.33 4.14 16 20 C -0.12 -2.01 5.58 -26.69 -0.15 -2.16 16 21 C -0.14 -2.48 5.93 -26.61 -0.16 -2.64 16 22 C 0.17 3.68 5.28 -3.71 -0.02 3.66 16 23 N -0.59 -12.56 2.64 -164.77 -0.44 -13.00 16 24 C -0.26 -6.17 8.58 -15.06 -0.13 -6.30 16 25 H 0.07 1.55 6.24 -52.49 -0.33 1.22 16 26 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 27 N -0.90 -23.99 11.23 55.49 0.62 -23.36 16 28 Si 0.90 19.75 29.58 -169.99 -5.03 14.72 16 29 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 30 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 31 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.20 7.66 -51.93 -0.40 0.80 16 34 H 0.05 0.83 6.40 -51.93 -0.33 0.49 16 35 H 0.40 6.16 6.84 -40.82 -0.28 5.89 16 36 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.91 7.53 -51.93 -0.39 0.52 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.09 2.08 6.15 -51.93 -0.32 1.76 16 46 H 0.25 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -27.79 373.53 -9.91 -37.70 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.13 Total: 9.93 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -4.45 Total: -2.90 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.05 Total: -53.96 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.79 -9.91 -37.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993657558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.159 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds