Wall clock time and date at job start Wed Apr 1 2020 05:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.58429 * 2 1 4 4 C 1.53197 * 109.58476 * 120.28035 * 2 1 3 5 5 H 1.08996 * 109.49834 * 294.51713 * 4 2 1 6 6 N 1.46502 * 109.49546 * 54.58146 * 4 2 1 7 7 C 1.34776 * 119.99613 * 204.99855 * 6 4 2 8 8 O 1.21640 * 120.00092 * 359.97438 * 7 6 4 9 9 C 1.47058 * 119.99847 * 180.02562 * 7 6 4 10 10 C 1.35877 * 125.43195 * 179.69265 * 9 7 6 11 11 C 1.41585 * 107.74208 * 179.90883 * 10 9 7 12 12 C 1.40121 * 133.34902 * 180.15149 * 11 10 9 13 13 C 1.36619 * 119.81119 * 180.24474 * 12 11 10 14 14 F 1.35093 * 119.71710 * 180.02562 * 13 12 11 15 15 C 1.39124 * 120.56000 * 0.02562 * 13 12 11 16 16 C 1.37661 * 120.62852 * 359.97207 * 15 13 12 17 17 C 1.39216 * 119.84136 * 0.02562 * 16 15 13 18 18 N 1.37571 * 133.14606 * 180.02562 * 17 16 15 19 19 H 0.96993 * 125.61434 * 359.96288 * 18 17 16 20 20 C 1.53046 * 109.31057 * 174.56543 * 4 2 1 21 21 C 1.53043 * 109.53661 * 298.63413 * 20 4 2 22 22 C 1.53194 * 109.31269 * 61.36833 * 21 20 4 23 23 N 1.46923 * 109.70416 * 239.64044 * 2 1 3 24 24 C 1.36942 * 120.63206 * 6.51206 * 23 2 1 25 25 H 1.08001 * 119.99595 * 330.21223 * 24 23 2 26 26 C 1.38810 * 120.00016 * 150.20582 * 24 23 2 27 27 N 1.31620 * 119.99942 * 344.47828 * 26 24 23 28 28 Si 1.86795 * 119.99872 * 164.47425 * 26 24 23 29 29 H 1.48509 * 109.47049 * 90.00392 * 28 26 24 30 30 H 1.48497 * 109.47148 * 209.99933 * 28 26 24 31 31 H 1.48495 * 109.47222 * 330.00437 * 28 26 24 32 32 H 1.09003 * 109.47171 * 300.00279 * 1 2 3 33 33 H 1.09007 * 109.47043 * 60.00235 * 1 2 3 34 34 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 35 35 H 0.96999 * 120.00424 * 25.00299 * 6 4 2 36 36 H 1.08000 * 126.12451 * 0.03402 * 10 9 7 37 37 H 1.08000 * 120.09534 * 0.26394 * 12 11 10 38 38 H 1.08001 * 119.68303 * 179.97438 * 15 13 12 39 39 H 1.08002 * 120.07897 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.45952 * 58.65404 * 20 4 2 41 41 H 1.08998 * 109.45457 * 178.63361 * 20 4 2 42 42 H 1.08994 * 109.49704 * 181.32117 * 21 20 4 43 43 H 1.09003 * 109.49931 * 301.38596 * 21 20 4 44 44 H 1.08995 * 109.58598 * 65.14619 * 22 21 20 45 45 H 1.09001 * 109.58352 * 185.43467 * 22 21 20 46 46 H 0.97005 * 119.99905 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 1 1.7638 -0.1654 2.1372 6 7 1.4533 -2.0672 1.3084 7 6 1.3302 -2.6951 2.4946 8 8 1.7095 -2.1497 3.5137 9 6 0.7383 -4.0398 2.5568 10 6 0.5671 -4.7736 3.6876 11 6 -0.0344 -6.0010 3.3185 12 6 -0.4418 -7.1288 4.0433 13 6 -1.0019 -8.1901 3.3902 14 9 -1.3944 -9.2763 4.0910 15 6 -1.1714 -8.1616 2.0096 16 6 -0.7787 -7.0641 1.2773 17 6 -0.2055 -5.9708 1.9209 18 7 0.2745 -4.7615 1.4741 19 1 0.2850 -4.4642 0.5509 20 6 3.5678 -0.8433 1.1730 21 6 3.9604 -1.6609 -0.0598 22 6 3.4686 -0.9436 -1.3210 23 7 2.0254 -0.6991 -1.1935 24 6 1.1585 -1.1153 -2.1685 25 1 0.1446 -1.3839 -1.9107 26 6 1.5827 -1.1918 -3.4879 27 7 2.6926 -0.5889 -3.8584 28 14 0.5786 -2.1503 -4.7378 29 1 -0.4165 -1.2476 -5.3705 30 1 1.4812 -2.7006 -5.7807 31 1 -0.1273 -3.2647 -4.0558 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3634 -1.0277 0.0005 35 1 1.1513 -2.5023 0.4958 36 1 0.8392 -4.4734 4.6887 37 1 -0.3136 -7.1590 5.1152 38 1 -1.6155 -9.0086 1.5077 39 1 -0.9148 -7.0513 0.2059 40 1 4.0045 0.1528 1.1022 41 1 3.9380 -1.3393 2.0703 42 1 5.0448 -1.7626 -0.0986 43 1 3.5041 -2.6491 -0.0014 44 1 3.9920 0.0063 -1.4287 45 1 3.6599 -1.5674 -2.1941 46 1 2.9888 -0.6420 -4.7805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993657558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:48 Heat of formation + Delta-G solvation = -18.364050 kcal Electronic energy + Delta-G solvation = -30530.027305 eV Core-core repulsion = 26334.235374 eV Total energy + Delta-G solvation = -4195.791931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.78232 -42.66876 -40.98572 -39.15589 -37.52891 -35.69554 -34.09536 -33.49058 -33.23650 -31.42136 -30.12301 -29.98199 -27.92815 -26.86393 -25.40906 -23.69674 -23.25836 -22.55707 -22.33432 -21.25711 -20.37724 -19.70389 -18.52369 -18.22841 -17.94532 -17.13844 -16.78201 -16.65848 -16.50110 -16.37475 -15.82354 -15.63142 -15.45203 -15.11112 -14.96540 -14.69683 -14.59670 -14.58284 -14.25066 -14.17287 -14.09396 -13.61042 -13.54358 -12.97740 -12.89896 -12.74854 -12.43304 -12.36877 -12.28738 -12.20988 -11.96658 -11.94975 -11.69466 -11.41844 -11.25787 -11.05159 -11.03173 -10.50838 -10.07576 -9.24388 -8.89113 -8.61653 -7.82756 -5.29814 -0.39051 0.36578 0.98596 1.48955 1.51693 1.58442 1.81085 2.10908 2.26208 2.52945 2.66939 3.30072 3.34320 3.57303 3.57803 3.69181 3.95051 3.99229 4.04528 4.10353 4.19306 4.29656 4.31747 4.37931 4.54195 4.59459 4.64578 4.75195 4.84868 4.93449 4.96120 4.97966 5.01816 5.10527 5.17235 5.19141 5.20250 5.32478 5.38936 5.44624 5.51476 5.54251 5.58537 5.73373 5.78913 5.94688 6.28793 6.43146 6.53134 7.07116 7.18806 7.88471 8.42388 9.23920 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.011592 B = 0.003316 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.781258 B = 8441.245334 C =10103.444236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.156 3.844 3 H 0.033 0.967 4 C 0.143 3.857 5 H 0.086 0.914 6 N -0.691 5.691 7 C 0.581 3.419 8 O -0.561 6.561 9 C 0.020 3.980 10 C -0.116 4.116 11 C -0.110 4.110 12 C -0.103 4.103 13 C 0.059 3.941 14 F -0.148 7.148 15 C -0.118 4.118 16 C -0.096 4.096 17 C 0.095 3.905 18 N -0.565 5.565 19 H 0.430 0.570 20 C -0.117 4.117 21 C -0.126 4.126 22 C 0.179 3.821 23 N -0.595 5.595 24 C -0.250 4.250 25 H 0.082 0.918 26 C -0.047 4.047 27 N -0.935 5.935 28 Si 0.956 3.044 29 H -0.293 1.293 30 H -0.303 1.303 31 H -0.261 1.261 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.406 0.594 36 H 0.162 0.838 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.159 0.841 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.051 0.949 44 H -0.006 1.006 45 H 0.054 0.946 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 -11.664 11.815 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.051 0.949 4 C 0.037 3.963 5 H 0.104 0.896 6 N -0.340 5.340 7 C 0.368 3.632 8 O -0.440 6.440 9 C -0.090 4.090 10 C -0.143 4.143 11 C -0.115 4.115 12 C -0.122 4.122 13 C 0.039 3.961 14 F -0.127 7.127 15 C -0.138 4.138 16 C -0.117 4.117 17 C -0.016 4.016 18 N -0.169 5.169 19 H 0.270 0.730 20 C -0.155 4.155 21 C -0.165 4.165 22 C 0.054 3.946 23 N -0.319 5.319 24 C -0.380 4.380 25 H 0.099 0.901 26 C -0.242 4.242 27 N -0.581 5.581 28 Si 0.786 3.214 29 H -0.220 1.220 30 H -0.230 1.230 31 H -0.185 1.185 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.242 0.758 36 H 0.179 0.821 37 H 0.167 0.833 38 H 0.182 0.818 39 H 0.176 0.824 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.013 0.987 45 H 0.073 0.927 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.840 -11.154 12.236 17.556 hybrid contribution -0.166 -0.203 -1.801 1.820 sum -6.006 -11.356 10.435 16.551 Atomic orbital electron populations 1.21708 0.94188 1.01667 1.01010 1.20851 0.94501 0.93558 0.86152 0.94918 1.21422 0.92955 0.82792 0.99105 0.89575 1.45834 1.61188 1.18502 1.08489 1.17342 0.78329 0.83747 0.83809 1.90797 1.51574 1.66570 1.35061 1.20124 1.06834 0.93794 0.88276 1.20988 1.02437 0.92524 0.98395 1.17964 1.05277 0.95691 0.92606 1.20412 0.99314 0.91223 1.01294 1.17196 1.03543 0.84887 0.90511 1.91476 1.89271 1.52798 1.79144 1.21125 1.01301 0.99793 0.91586 1.20247 0.99876 0.90263 1.01268 1.18633 1.01070 0.88168 0.93699 1.42010 1.52074 1.13524 1.09336 0.73021 1.21738 0.95337 1.00760 0.97675 1.21947 0.99761 0.98920 0.95847 1.20564 0.83361 0.95803 0.94901 1.44337 1.02848 1.65400 1.19350 1.19468 0.95683 1.36464 0.86346 0.90061 1.25783 0.98825 1.00773 0.98864 1.70178 1.25882 1.45486 1.16526 0.85449 0.77745 0.79050 0.79185 1.22027 1.23013 1.18514 0.91696 0.93331 0.92575 0.75791 0.82055 0.83259 0.81806 0.82386 0.91197 0.92383 0.92065 0.93015 0.98746 0.92720 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.73 71.98 0.56 -3.54 16 2 C 0.16 5.57 3.19 44.98 0.14 5.71 16 3 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 4 C 0.14 4.51 2.32 45.07 0.10 4.62 16 5 H 0.09 2.68 7.58 -2.39 -0.02 2.67 16 6 N -0.69 -20.10 3.46 -445.77 -1.54 -21.64 16 7 C 0.58 17.27 7.77 86.56 0.67 17.94 16 8 O -0.56 -19.65 16.50 -4.16 -0.07 -19.72 16 9 C 0.02 0.52 6.97 39.92 0.28 0.80 16 10 C -0.12 -2.85 10.53 22.55 0.24 -2.61 16 11 C -0.11 -2.49 6.16 -21.36 -0.13 -2.62 16 12 C -0.10 -2.04 10.03 22.35 0.22 -1.81 16 13 C 0.06 1.12 7.24 22.10 0.16 1.28 16 14 F -0.15 -2.98 17.25 44.97 0.78 -2.21 16 15 C -0.12 -1.87 9.99 22.35 0.22 -1.65 16 16 C -0.10 -1.59 10.07 22.37 0.23 -1.37 16 17 C 0.10 2.01 7.25 39.11 0.28 2.30 16 18 N -0.56 -12.29 6.08 -177.14 -1.08 -13.37 16 19 H 0.43 8.19 8.12 -92.71 -0.75 7.44 16 20 C -0.12 -3.71 5.58 30.62 0.17 -3.54 16 21 C -0.13 -4.37 5.93 30.67 0.18 -4.19 16 22 C 0.18 7.83 5.28 86.36 0.46 8.28 16 23 N -0.60 -25.42 2.64 -675.21 -1.78 -27.20 16 24 C -0.25 -11.60 8.58 84.03 0.72 -10.88 16 25 H 0.08 3.53 6.24 -2.91 -0.02 3.51 16 26 C -0.05 -2.35 4.94 84.86 0.42 -1.93 16 27 N -0.93 -51.48 11.23 21.65 0.24 -51.24 16 28 Si 0.96 40.62 29.58 68.60 2.03 42.65 16 29 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 30 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 31 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.05 1.71 7.66 -2.38 -0.02 1.69 16 34 H 0.06 1.72 6.40 -2.39 -0.02 1.70 16 35 H 0.41 11.70 6.84 -92.71 -0.63 11.07 16 36 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 37 H 0.15 2.44 8.06 -2.91 -0.02 2.41 16 38 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 39 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 1.79 7.53 -2.39 -0.02 1.77 16 44 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.05 2.74 6.15 -2.39 -0.01 2.72 16 46 H 0.25 13.40 8.31 -92.70 -0.77 12.63 16 Total: -1.00 -59.73 373.53 3.15 -56.57 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.35 Total: 29.34 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 4.93 Total: 6.81 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -4.16 Total: -113.45 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.07 Total: -19.72 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.21 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Total: -59.73 3.15 -56.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993657558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.210 kcal (2) G-P(sol) polarization free energy of solvation -59.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds