Wall clock time and date at job start Wed Apr 1 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.58661 * 2 1 4 4 C 1.53193 * 109.58628 * 120.42645 * 2 1 3 5 5 H 1.08994 * 109.50026 * 294.40654 * 4 2 1 6 6 N 1.46492 * 109.49797 * 54.47339 * 4 2 1 7 7 C 1.34778 * 120.00084 * 204.99866 * 6 4 2 8 8 O 1.21685 * 120.00177 * 359.97438 * 7 6 4 9 9 C 1.46826 * 120.00206 * 179.97438 * 7 6 4 10 10 C 1.41291 * 126.50035 * 359.68792 * 9 7 6 11 11 N 1.30374 * 108.46314 * 179.87746 * 10 9 7 12 12 N 1.39984 * 109.30394 * 0.38780 * 11 10 9 13 13 C 1.35982 * 108.17110 * 359.75179 * 12 11 10 14 14 N 1.37179 * 120.55656 * 179.97438 * 13 12 11 15 15 H 0.96990 * 119.87976 * 179.97438 * 14 13 12 16 16 C 1.36352 * 120.23716 * 359.97438 * 14 13 12 17 17 C 1.35245 * 119.83148 * 0.02562 * 16 14 13 18 18 C 1.34864 * 131.92327 * 179.72792 * 12 11 10 19 19 O 1.21815 * 120.11211 * 0.05120 * 18 12 11 20 20 C 1.53048 * 109.31320 * 174.42297 * 4 2 1 21 21 C 1.53038 * 109.53516 * 298.63876 * 20 4 2 22 22 C 1.53189 * 109.31700 * 61.36323 * 21 20 4 23 23 N 1.46923 * 109.58813 * 239.71513 * 2 1 3 24 24 C 1.36933 * 120.63008 * 6.58543 * 23 2 1 25 25 H 1.08003 * 120.00321 * 330.17976 * 24 23 2 26 26 C 1.38820 * 120.00265 * 150.18534 * 24 23 2 27 27 N 1.31615 * 119.99767 * 344.48570 * 26 24 23 28 28 Si 1.86793 * 119.99937 * 164.48224 * 26 24 23 29 29 H 1.48507 * 109.47592 * 0.02562 * 28 26 24 30 30 H 1.48500 * 109.47017 * 119.99974 * 28 26 24 31 31 H 1.48495 * 109.47307 * 239.99856 * 28 26 24 32 32 H 1.09004 * 109.46584 * 180.28618 * 1 2 3 33 33 H 1.08995 * 109.46978 * 300.28139 * 1 2 3 34 34 H 1.08993 * 109.46882 * 60.28549 * 1 2 3 35 35 H 0.97001 * 120.00237 * 25.00073 * 6 4 2 36 36 H 1.08003 * 125.77026 * 0.02562 * 10 9 7 37 37 H 1.07997 * 120.08196 * 180.02562 * 16 14 13 38 38 H 1.08005 * 120.14803 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.46179 * 178.61637 * 20 4 2 40 40 H 1.09004 * 109.45696 * 58.65398 * 20 4 2 41 41 H 1.09000 * 109.49834 * 301.40815 * 21 20 4 42 42 H 1.09005 * 109.49587 * 181.31366 * 21 20 4 43 43 H 1.08996 * 109.58557 * 65.14900 * 22 21 20 44 44 H 1.09001 * 109.58780 * 185.57565 * 22 21 20 45 45 H 0.97000 * 119.99945 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7309 1.2445 5 1 1.7655 -0.1698 2.1366 6 7 1.4515 -2.0695 1.3045 7 6 1.3285 -2.6995 2.4897 8 8 1.7097 -2.1566 3.5098 9 6 0.7345 -4.0409 2.5499 10 6 0.2434 -4.7923 1.4588 11 7 -0.2020 -5.9318 1.9094 12 7 -0.0346 -5.9774 3.2985 13 6 0.5428 -4.8118 3.6945 14 7 0.8225 -4.5866 5.0185 15 1 1.2349 -3.7518 5.2901 16 6 0.5228 -5.5322 5.9541 17 6 -0.0517 -6.6961 5.5742 18 6 -0.3364 -6.9226 4.2119 19 8 -0.8534 -7.9684 3.8612 20 6 3.5676 -0.8494 1.1691 21 6 3.9569 -1.6655 -0.0656 22 6 3.4651 -0.9452 -1.3249 23 7 2.0226 -0.6981 -1.1953 24 6 1.1537 -1.1107 -2.1699 25 1 0.1397 -1.3782 -1.9115 26 6 1.5761 -1.1854 -3.4902 27 7 2.6866 -0.5840 -3.8608 28 14 0.5685 -2.1395 -4.7406 29 1 -0.6269 -2.7178 -4.0757 30 1 0.1357 -1.2259 -5.8284 31 1 1.3951 -3.2328 -5.3120 32 1 -0.3633 -1.0277 0.0051 33 1 -0.3633 0.5182 0.8874 34 1 -0.3633 0.5094 -0.8925 35 1 1.1479 -2.5025 0.4913 36 1 0.2398 -4.4772 0.4258 37 1 0.7437 -5.3521 6.9958 38 1 -0.2916 -7.4485 6.3110 39 1 3.9379 -1.3474 2.0652 40 1 4.0062 0.1461 1.0995 41 1 3.4984 -2.6528 -0.0086 42 1 5.0413 -1.7693 -0.1059 43 1 3.9903 0.0039 -1.4316 44 1 3.6519 -1.5689 -2.1991 45 1 2.9816 -0.6358 -4.7834 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993950250.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:39 Heat of formation + Delta-G solvation = 59.473429 kcal Electronic energy + Delta-G solvation = -31098.056974 eV Core-core repulsion = 26925.560290 eV Total energy + Delta-G solvation = -4172.496683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.92846 -39.84327 -38.95404 -38.26451 -37.49001 -34.00445 -33.16415 -32.44671 -31.86091 -31.61657 -30.07155 -29.05130 -26.35920 -25.08343 -24.71615 -24.32230 -22.75696 -21.95706 -20.89982 -20.49892 -19.22503 -18.85769 -18.37990 -17.61989 -17.03032 -16.90759 -16.44373 -15.98898 -15.40785 -14.91956 -14.84732 -14.21791 -14.01674 -13.99118 -13.90704 -13.71936 -13.61432 -13.53250 -13.28716 -13.06400 -13.00451 -12.59869 -11.90097 -11.32579 -11.31361 -11.26704 -11.01495 -10.75020 -10.73023 -10.65703 -10.54420 -10.30250 -10.14291 -10.04906 -9.80299 -9.78533 -9.69050 -9.34456 -8.68153 -8.52597 -8.25160 -6.71679 -5.85457 -3.31405 0.48863 0.71069 1.63257 1.96656 2.21765 2.98564 3.33110 3.41952 3.43021 3.45109 3.48761 3.81418 4.19982 4.39114 4.42175 4.47065 4.80057 5.00745 5.11388 5.24525 5.28220 5.35548 5.52651 5.57441 5.69656 5.78632 5.91610 6.01725 6.07694 6.17980 6.27474 6.36093 6.38950 6.48177 6.61482 6.62807 6.63321 6.73678 6.80694 6.89566 6.92675 7.03905 7.33823 7.56288 7.62163 7.74669 7.92518 8.37840 8.48895 9.13939 9.76880 10.33981 11.22454 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003375 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.054010 B = 8293.936517 C = 9549.935608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.136 3.864 5 H 0.078 0.922 6 N -0.689 5.689 7 C 0.595 3.405 8 O -0.575 6.575 9 C -0.299 4.299 10 C 0.131 3.869 11 N -0.262 5.262 12 N -0.358 5.358 13 C 0.365 3.635 14 N -0.587 5.587 15 H 0.447 0.553 16 C 0.189 3.811 17 C -0.308 4.308 18 C 0.563 3.437 19 O -0.490 6.490 20 C -0.120 4.120 21 C -0.141 4.141 22 C 0.171 3.829 23 N -0.586 5.586 24 C -0.259 4.259 25 H 0.072 0.928 26 C 0.008 3.992 27 N -0.898 5.898 28 Si 0.898 3.102 29 H -0.276 1.276 30 H -0.291 1.291 31 H -0.289 1.289 32 H 0.053 0.947 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.409 0.591 36 H 0.211 0.789 37 H 0.191 0.809 38 H 0.179 0.821 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.018 0.982 44 H 0.085 0.915 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.317 -4.622 19.410 19.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.051 3.949 3 H 0.057 0.943 4 C 0.030 3.970 5 H 0.096 0.904 6 N -0.338 5.338 7 C 0.383 3.617 8 O -0.458 6.458 9 C -0.317 4.317 10 C -0.060 4.060 11 N -0.079 5.079 12 N -0.158 5.158 13 C 0.141 3.859 14 N -0.205 5.205 15 H 0.290 0.710 16 C 0.060 3.940 17 C -0.338 4.338 18 C 0.361 3.639 19 O -0.361 6.361 20 C -0.159 4.159 21 C -0.180 4.180 22 C 0.046 3.954 23 N -0.310 5.310 24 C -0.388 4.388 25 H 0.089 0.911 26 C -0.191 4.191 27 N -0.542 5.542 28 Si 0.728 3.272 29 H -0.201 1.201 30 H -0.218 1.218 31 H -0.216 1.216 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.227 0.773 37 H 0.207 0.793 38 H 0.196 0.804 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.901 -6.105 19.440 20.464 hybrid contribution 0.072 0.457 -0.863 0.979 sum -1.829 -5.648 18.577 19.502 Atomic orbital electron populations 1.21790 0.95592 1.01473 1.00524 1.20727 0.93381 0.93937 0.86816 0.94257 1.21564 0.92890 0.82583 0.99941 0.90442 1.45717 1.61029 1.18540 1.08549 1.16819 0.77767 0.83036 0.84127 1.90678 1.52978 1.67632 1.34464 1.19643 1.21866 1.00086 0.90082 1.24439 0.91719 0.89491 1.00303 1.77644 1.24884 1.20852 0.84471 1.48107 1.46408 1.13496 1.07835 1.18737 0.93511 0.88320 0.85368 1.41128 1.56279 1.20953 1.02091 0.71021 1.22428 0.89330 0.87119 0.95087 1.21660 1.15948 1.01647 0.94518 1.17143 0.79117 0.82547 0.85052 1.90917 1.40235 1.24156 1.80829 1.21770 0.95402 1.00475 0.98242 1.22145 0.98962 0.99607 0.97283 1.20789 0.83175 0.97132 0.94307 1.44173 1.03100 1.64948 1.18758 1.19181 0.95230 1.38277 0.86113 0.91073 1.25107 0.97727 0.99257 0.97042 1.70029 1.24014 1.43433 1.16704 0.86309 0.79696 0.79590 0.81655 1.20096 1.21823 1.21590 0.92753 0.94227 0.91715 0.75408 0.77282 0.79255 0.80399 0.93141 0.91910 0.92764 0.93499 0.96414 0.89633 0.93665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.74 37.16 0.29 -2.00 16 2 C 0.16 2.89 3.20 -67.60 -0.22 2.68 16 3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.14 2.19 2.33 -67.81 -0.16 2.03 16 5 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 6 N -0.69 -10.30 3.44 -54.95 -0.19 -10.49 16 7 C 0.60 8.62 7.76 -12.79 -0.10 8.52 16 8 O -0.58 -9.00 15.47 5.20 0.08 -8.92 16 9 C -0.30 -3.95 6.15 -104.86 -0.64 -4.60 16 10 C 0.13 1.73 11.47 -17.01 -0.20 1.53 16 11 N -0.26 -4.06 12.54 30.85 0.39 -3.67 16 12 N -0.36 -5.08 3.79 -13.82 -0.05 -5.13 16 13 C 0.36 4.41 7.78 -153.53 -1.20 3.21 16 14 N -0.59 -4.58 5.39 -11.73 -0.06 -4.64 16 15 H 0.45 3.02 7.78 -40.82 -0.32 2.70 16 16 C 0.19 0.90 11.25 -16.61 -0.19 0.71 16 17 C -0.31 -2.40 9.95 -39.60 -0.39 -2.79 16 18 C 0.56 7.64 7.69 -15.17 -0.12 7.53 16 19 O -0.49 -8.49 17.90 5.09 0.09 -8.40 16 20 C -0.12 -1.95 5.58 -26.69 -0.15 -2.09 16 21 C -0.14 -2.49 5.93 -26.61 -0.16 -2.64 16 22 C 0.17 3.70 5.28 -3.71 -0.02 3.68 16 23 N -0.59 -12.64 2.64 -164.78 -0.44 -13.08 16 24 C -0.26 -6.16 8.57 -15.06 -0.13 -6.29 16 25 H 0.07 1.63 6.24 -52.48 -0.33 1.31 16 26 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 27 N -0.90 -24.38 11.23 55.49 0.62 -23.75 16 28 Si 0.90 20.30 29.58 -169.99 -5.03 15.27 16 29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 31 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 32 H 0.05 0.89 6.39 -51.93 -0.33 0.56 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 1.19 7.63 -51.93 -0.40 0.79 16 35 H 0.41 6.23 6.71 -40.82 -0.27 5.96 16 36 H 0.21 2.27 7.48 -52.48 -0.39 1.88 16 37 H 0.19 -0.14 8.06 -52.49 -0.42 -0.56 16 38 H 0.18 0.92 8.06 -52.48 -0.42 0.49 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.97 7.53 -51.93 -0.39 0.58 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 2.10 6.15 -51.93 -0.32 1.79 16 45 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -33.29 365.68 -8.20 -41.49 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.66 Total: 6.22 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -3.46 Total: 9.60 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.27 Total: -60.76 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.17 Total: -17.32 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.29 -8.20 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993950250.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.962 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds