Wall clock time and date at job start Wed Apr 1 2020 05:10:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08992 * 109.70417 * 2 1
4 4 C 1.53203 * 109.58488 * 239.64732 * 2 1 3
5 5 H 1.09003 * 109.49356 * 65.62422 * 4 2 1
6 6 N 1.46498 * 109.51895 * 305.54746 * 4 2 1
7 7 C 1.34775 * 119.99678 * 155.14870 * 6 4 2
8 8 O 1.21689 * 120.00201 * 359.97438 * 7 6 4
9 9 C 1.46825 * 120.00146 * 179.97438 * 7 6 4
10 10 C 1.41294 * 126.50005 * 359.68439 * 9 7 6
11 11 N 1.30371 * 108.46209 * 179.81912 * 10 9 7
12 12 N 1.39983 * 109.30601 * 0.44871 * 11 10 9
13 13 C 1.35987 * 108.16986 * 359.71547 * 12 11 10
14 14 N 1.37176 * 120.55423 * 180.02562 * 13 12 11
15 15 H 0.96994 * 119.87674 * 180.02562 * 14 13 12
16 16 C 1.36350 * 120.24136 * 359.93125 * 14 13 12
17 17 C 1.35240 * 119.83015 * 0.06860 * 16 14 13
18 18 C 1.34859 * 131.92211 * 179.71258 * 12 11 10
19 19 O 1.21819 * 120.11602 * 359.97438 * 18 12 11
20 20 C 1.53031 * 109.30981 * 185.57767 * 4 2 1
21 21 C 1.53046 * 109.54141 * 61.36638 * 20 4 2
22 22 C 1.53194 * 109.31051 * 298.63169 * 21 20 4
23 23 N 1.46926 * 109.58671 * 120.35884 * 2 1 3
24 24 C 1.36932 * 120.63167 * 353.67061 * 23 2 1
25 25 H 1.08002 * 119.99949 * 28.83674 * 24 23 2
26 26 C 1.38816 * 120.00132 * 208.84609 * 24 23 2
27 27 N 1.31612 * 119.99748 * 15.09188 * 26 24 23
28 28 Si 1.86796 * 120.00120 * 195.09605 * 26 24 23
29 29 H 1.48500 * 109.47239 * 359.97438 * 28 26 24
30 30 H 1.48505 * 109.47130 * 119.99326 * 28 26 24
31 31 H 1.48496 * 109.47360 * 239.99593 * 28 26 24
32 32 H 1.08999 * 109.47079 * 299.64320 * 1 2 3
33 33 H 1.09002 * 109.46946 * 59.64173 * 1 2 3
34 34 H 1.09001 * 109.47274 * 179.64156 * 1 2 3
35 35 H 0.97002 * 120.00364 * 335.13869 * 6 4 2
36 36 H 1.08002 * 125.76819 * 359.96717 * 10 9 7
37 37 H 1.07992 * 120.08660 * 180.02562 * 16 14 13
38 38 H 1.08006 * 120.15445 * 179.97438 * 17 16 14
39 39 H 1.09003 * 109.46628 * 301.34301 * 20 4 2
40 40 H 1.09005 * 109.44810 * 181.37564 * 20 4 2
41 41 H 1.08996 * 109.49894 * 178.67716 * 21 20 4
42 42 H 1.08999 * 109.52156 * 58.59663 * 21 20 4
43 43 H 1.08994 * 109.58581 * 294.84337 * 22 21 20
44 44 H 1.08999 * 109.69915 * 174.48907 * 22 21 20
45 45 H 0.97000 * 120.00162 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0261 0.0000
4 6 2.0435 -0.7294 -1.2456
5 1 1.7659 -0.1667 -2.1369
6 7 1.4513 -2.0679 -1.3080
7 6 1.3313 -2.6969 -2.4939
8 8 1.7145 -2.1530 -3.5127
9 6 0.7383 -4.0386 -2.5565
10 6 0.2564 -4.7963 -1.4656
11 7 -0.1972 -5.9311 -1.9194
12 7 -0.0273 -5.9754 -3.3082
13 6 0.5497 -4.8087 -3.7022
14 7 0.8315 -4.5821 -5.0254
15 1 1.2434 -3.7465 -5.2955
16 6 0.5364 -5.5279 -5.9621
17 6 -0.0376 -6.6928 -5.5844
18 6 -0.3259 -6.9203 -4.2228
19 8 -0.8424 -7.9670 -3.8740
20 6 3.5674 -0.8480 -1.1703
21 6 3.9569 -1.6658 0.0633
22 6 3.4651 -0.9470 1.3236
23 7 2.0226 -0.6996 1.1944
24 6 1.1531 -1.1182 2.1660
25 1 0.1362 -1.3734 1.9071
26 6 1.5788 -1.2142 3.4838
27 7 2.6997 -0.6342 3.8572
28 14 0.5609 -2.1668 4.7271
29 1 -0.6454 -2.7191 4.0600
30 1 1.3726 -3.2792 5.2831
31 1 0.1460 -1.2591 5.8267
32 1 -0.3633 0.5083 0.8932
33 1 -0.3633 0.5194 -0.8868
34 1 -0.3634 -1.0276 -0.0064
35 1 1.1456 -2.5014 -0.4959
36 1 0.2607 -4.4865 -0.4309
37 1 0.7597 -5.3471 -7.0031
38 1 -0.2739 -7.4454 -6.3220
39 1 4.0061 0.1474 -1.0994
40 1 3.9375 -1.3450 -2.0670
41 1 5.0412 -1.7697 0.1035
42 1 3.4987 -2.6531 0.0054
43 1 3.9904 0.0018 1.4316
44 1 3.6521 -1.5698 2.1984
45 1 2.9974 -0.7015 4.7779
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000993950261.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:47
Heat of formation + Delta-G solvation = 59.858168 kcal
Electronic energy + Delta-G solvation = -31103.140489 eV
Core-core repulsion = 26930.660489 eV
Total energy + Delta-G solvation = -4172.480000 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-42.92768 -39.84256 -38.95319 -38.26392 -37.49039 -34.00764 -33.16383 -32.44208
-31.86448 -31.61910 -30.06698 -29.04659 -26.35995 -25.08955 -24.71563 -24.32215
-22.75583 -21.95207 -20.89898 -20.49995 -19.22448 -18.85704 -18.37908 -17.61951
-17.02923 -16.90728 -16.44605 -15.98827 -15.41321 -14.91961 -14.84708 -14.21756
-14.01372 -13.99188 -13.90211 -13.71812 -13.61262 -13.53291 -13.28533 -13.06017
-13.00421 -12.59964 -11.89717 -11.32761 -11.31434 -11.27030 -11.01040 -10.74915
-10.72733 -10.65993 -10.54131 -10.30202 -10.13963 -10.04439 -9.80235 -9.78358
-9.68599 -9.34879 -8.68223 -8.52402 -8.25079 -6.72565 -5.85030 -3.30668
0.48944 0.71106 1.63309 1.96719 2.21821 2.98599 3.33210 3.41946
3.43083 3.45180 3.48775 3.81448 4.20030 4.39169 4.42176 4.47137
4.80113 5.00776 5.11452 5.24547 5.28232 5.35687 5.52724 5.57563
5.69910 5.78697 5.91640 6.01799 6.07592 6.17572 6.27579 6.35931
6.38933 6.48391 6.61552 6.62937 6.63534 6.73867 6.80743 6.89656
6.92153 7.03723 7.34702 7.56345 7.64058 7.74520 7.92533 8.37745
8.48933 9.14109 9.77161 10.33616 11.22747
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.013971 B = 0.003383 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.674459 B = 8275.032112 C = 9533.372886
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.159 3.841
3 H 0.040 0.960
4 C 0.136 3.864
5 H 0.077 0.923
6 N -0.689 5.689
7 C 0.595 3.405
8 O -0.575 6.575
9 C -0.299 4.299
10 C 0.131 3.869
11 N -0.262 5.262
12 N -0.358 5.358
13 C 0.365 3.635
14 N -0.587 5.587
15 H 0.447 0.553
16 C 0.189 3.811
17 C -0.308 4.308
18 C 0.563 3.437
19 O -0.490 6.490
20 C -0.120 4.120
21 C -0.141 4.141
22 C 0.170 3.830
23 N -0.586 5.586
24 C -0.258 4.258
25 H 0.072 0.928
26 C 0.007 3.993
27 N -0.899 5.899
28 Si 0.898 3.102
29 H -0.276 1.276
30 H -0.289 1.289
31 H -0.291 1.291
32 H 0.064 0.936
33 H 0.039 0.961
34 H 0.054 0.946
35 H 0.409 0.591
36 H 0.211 0.789
37 H 0.191 0.809
38 H 0.179 0.821
39 H 0.062 0.938
40 H 0.050 0.950
41 H 0.046 0.954
42 H 0.053 0.947
43 H 0.017 0.983
44 H 0.088 0.912
45 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.311 -4.523 -19.401 19.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.052 3.948
3 H 0.058 0.942
4 C 0.030 3.970
5 H 0.095 0.905
6 N -0.338 5.338
7 C 0.383 3.617
8 O -0.458 6.458
9 C -0.317 4.317
10 C -0.059 4.059
11 N -0.079 5.079
12 N -0.158 5.158
13 C 0.141 3.859
14 N -0.205 5.205
15 H 0.290 0.710
16 C 0.060 3.940
17 C -0.338 4.338
18 C 0.361 3.639
19 O -0.361 6.361
20 C -0.159 4.159
21 C -0.180 4.180
22 C 0.044 3.956
23 N -0.310 5.310
24 C -0.387 4.387
25 H 0.090 0.910
26 C -0.192 4.192
27 N -0.543 5.543
28 Si 0.728 3.272
29 H -0.201 1.201
30 H -0.216 1.216
31 H -0.218 1.218
32 H 0.083 0.917
33 H 0.058 0.942
34 H 0.073 0.927
35 H 0.246 0.754
36 H 0.227 0.773
37 H 0.207 0.793
38 H 0.196 0.804
39 H 0.081 0.919
40 H 0.069 0.931
41 H 0.065 0.935
42 H 0.072 0.928
43 H 0.035 0.965
44 H 0.107 0.893
45 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -1.902 -6.003 -19.433 20.428
hybrid contribution 0.067 0.451 0.851 0.965
sum -1.836 -5.552 -18.582 19.481
Atomic orbital electron populations
1.21792 0.95584 1.01484 1.00535 1.20725 0.93367 0.93948 0.86796
0.94236 1.21573 0.92904 0.82592 0.99945 0.90456 1.45717 1.60988
1.18560 1.08569 1.16819 0.77760 0.83053 0.84117 1.90679 1.52899
1.67596 1.34582 1.19643 1.22038 0.99968 0.90029 1.24439 0.91694
0.89508 1.00307 1.77642 1.24712 1.21058 0.84438 1.48106 1.46404
1.13461 1.07878 1.18736 0.93575 0.88230 0.85390 1.41128 1.56319
1.20886 1.02121 0.71021 1.22424 0.89359 0.87127 0.95054 1.21663
1.15935 1.01620 0.94552 1.17147 0.79127 0.82562 0.85026 1.90918
1.40259 1.24097 1.80865 1.21770 0.95396 1.00471 0.98257 1.22145
0.98957 0.99592 0.97297 1.20823 0.83092 0.97219 0.94421 1.44174
1.03107 1.64770 1.18957 1.19198 0.94893 1.38224 0.86380 0.91019
1.25087 0.97672 0.99479 0.96979 1.70020 1.23368 1.44134 1.16770
0.86299 0.79724 0.79570 0.81611 1.20114 1.21595 1.21827 0.91722
0.94211 0.92732 0.75408 0.77280 0.79256 0.80400 0.91915 0.93148
0.93511 0.92780 0.96474 0.89342 0.93668
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.28 7.73 37.16 0.29 -2.00 16
2 C 0.16 2.90 3.20 -67.59 -0.22 2.68 16
3 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
4 C 0.14 2.18 2.32 -67.81 -0.16 2.02 16
5 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16
6 N -0.69 -10.31 3.45 -54.95 -0.19 -10.50 16
7 C 0.60 8.63 7.76 -12.79 -0.10 8.53 16
8 O -0.58 -9.01 15.47 5.20 0.08 -8.93 16
9 C -0.30 -3.96 6.15 -104.86 -0.64 -4.60 16
10 C 0.13 1.73 11.47 -17.01 -0.20 1.54 16
11 N -0.26 -4.06 12.54 30.85 0.39 -3.68 16
12 N -0.36 -5.08 3.79 -13.82 -0.05 -5.14 16
13 C 0.36 4.41 7.78 -153.53 -1.20 3.22 16
14 N -0.59 -4.58 5.39 -11.73 -0.06 -4.65 16
15 H 0.45 3.02 7.78 -40.82 -0.32 2.70 16
16 C 0.19 0.90 11.25 -16.61 -0.19 0.71 16
17 C -0.31 -2.40 9.95 -39.60 -0.39 -2.79 16
18 C 0.56 7.65 7.70 -15.17 -0.12 7.53 16
19 O -0.49 -8.50 17.90 5.08 0.09 -8.40 16
20 C -0.12 -1.95 5.57 -26.69 -0.15 -2.10 16
21 C -0.14 -2.49 5.93 -26.61 -0.16 -2.65 16
22 C 0.17 3.68 5.30 -3.71 -0.02 3.66 16
23 N -0.59 -12.65 2.65 -164.77 -0.44 -13.09 16
24 C -0.26 -6.13 8.60 -15.06 -0.13 -6.26 16
25 H 0.07 1.65 6.20 -52.49 -0.33 1.32 16
26 C 0.01 0.18 4.96 -17.43 -0.09 0.09 16
27 N -0.90 -24.38 11.14 55.49 0.62 -23.76 16
28 Si 0.90 20.30 29.58 -169.99 -5.03 15.27 16
29 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16
30 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
31 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16
32 H 0.06 1.18 7.63 -51.93 -0.40 0.79 16
33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16
34 H 0.05 0.89 6.38 -51.93 -0.33 0.56 16
35 H 0.41 6.24 6.70 -40.82 -0.27 5.97 16
36 H 0.21 2.28 7.48 -52.49 -0.39 1.89 16
37 H 0.19 -0.13 8.06 -52.49 -0.42 -0.56 16
38 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16
39 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16
40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
42 H 0.05 0.97 7.53 -51.93 -0.39 0.58 16
43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.09 2.18 6.05 -51.93 -0.31 1.87 16
45 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16
LS Contribution 365.53 15.07 5.51 5.51
Total: -1.00 -33.27 365.53 -8.20 -41.47
By element:
Atomic # 1 Polarization: 11.97 SS G_CDS: -5.65 Total: 6.32 kcal
Atomic # 6 Polarization: 13.04 SS G_CDS: -3.46 Total: 9.58 kcal
Atomic # 7 Polarization: -61.07 SS G_CDS: 0.26 Total: -60.81 kcal
Atomic # 8 Polarization: -17.50 SS G_CDS: 0.17 Total: -17.33 kcal
Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -33.27 -8.20 -41.47 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000993950261.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.327 kcal
(2) G-P(sol) polarization free energy of solvation -33.271 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.057 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.469 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds