Wall clock time and date at job start Wed Apr 1 2020 05:10:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08992 * 109.70417 * 2 1
4 4 C 1.53203 * 109.58488 * 239.64732 * 2 1 3
5 5 H 1.09003 * 109.49356 * 65.62422 * 4 2 1
6 6 N 1.46498 * 109.51895 * 305.54746 * 4 2 1
7 7 C 1.34775 * 119.99678 * 155.14870 * 6 4 2
8 8 O 1.21689 * 120.00201 * 359.97438 * 7 6 4
9 9 C 1.46825 * 120.00146 * 179.97438 * 7 6 4
10 10 C 1.41294 * 126.50005 * 359.68439 * 9 7 6
11 11 N 1.30371 * 108.46209 * 179.81912 * 10 9 7
12 12 N 1.39983 * 109.30601 * 0.44871 * 11 10 9
13 13 C 1.35987 * 108.16986 * 359.71547 * 12 11 10
14 14 N 1.37176 * 120.55423 * 180.02562 * 13 12 11
15 15 H 0.96994 * 119.87674 * 180.02562 * 14 13 12
16 16 C 1.36350 * 120.24136 * 359.93125 * 14 13 12
17 17 C 1.35240 * 119.83015 * 0.06860 * 16 14 13
18 18 C 1.34859 * 131.92211 * 179.71258 * 12 11 10
19 19 O 1.21819 * 120.11602 * 359.97438 * 18 12 11
20 20 C 1.53031 * 109.30981 * 185.57767 * 4 2 1
21 21 C 1.53046 * 109.54141 * 61.36638 * 20 4 2
22 22 C 1.53194 * 109.31051 * 298.63169 * 21 20 4
23 23 N 1.46926 * 109.58671 * 120.35884 * 2 1 3
24 24 C 1.36932 * 120.63167 * 353.67061 * 23 2 1
25 25 H 1.08002 * 119.99949 * 28.83674 * 24 23 2
26 26 C 1.38816 * 120.00132 * 208.84609 * 24 23 2
27 27 N 1.31612 * 119.99748 * 15.09188 * 26 24 23
28 28 Si 1.86796 * 120.00120 * 195.09605 * 26 24 23
29 29 H 1.48500 * 109.47239 * 359.97438 * 28 26 24
30 30 H 1.48505 * 109.47130 * 119.99326 * 28 26 24
31 31 H 1.48496 * 109.47360 * 239.99593 * 28 26 24
32 32 H 1.08999 * 109.47079 * 299.64320 * 1 2 3
33 33 H 1.09002 * 109.46946 * 59.64173 * 1 2 3
34 34 H 1.09001 * 109.47274 * 179.64156 * 1 2 3
35 35 H 0.97002 * 120.00364 * 335.13869 * 6 4 2
36 36 H 1.08002 * 125.76819 * 359.96717 * 10 9 7
37 37 H 1.07992 * 120.08660 * 180.02562 * 16 14 13
38 38 H 1.08006 * 120.15445 * 179.97438 * 17 16 14
39 39 H 1.09003 * 109.46628 * 301.34301 * 20 4 2
40 40 H 1.09005 * 109.44810 * 181.37564 * 20 4 2
41 41 H 1.08996 * 109.49894 * 178.67716 * 21 20 4
42 42 H 1.08999 * 109.52156 * 58.59663 * 21 20 4
43 43 H 1.08994 * 109.58581 * 294.84337 * 22 21 20
44 44 H 1.08999 * 109.69915 * 174.48907 * 22 21 20
45 45 H 0.97000 * 120.00162 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8975 1.0261 0.0000
4 6 2.0435 -0.7294 -1.2456
5 1 1.7659 -0.1667 -2.1369
6 7 1.4513 -2.0679 -1.3080
7 6 1.3313 -2.6969 -2.4939
8 8 1.7145 -2.1530 -3.5127
9 6 0.7383 -4.0386 -2.5565
10 6 0.2564 -4.7963 -1.4656
11 7 -0.1972 -5.9311 -1.9194
12 7 -0.0273 -5.9754 -3.3082
13 6 0.5497 -4.8087 -3.7022
14 7 0.8315 -4.5821 -5.0254
15 1 1.2434 -3.7465 -5.2955
16 6 0.5364 -5.5279 -5.9621
17 6 -0.0376 -6.6928 -5.5844
18 6 -0.3259 -6.9203 -4.2228
19 8 -0.8424 -7.9670 -3.8740
20 6 3.5674 -0.8480 -1.1703
21 6 3.9569 -1.6658 0.0633
22 6 3.4651 -0.9470 1.3236
23 7 2.0226 -0.6996 1.1944
24 6 1.1531 -1.1182 2.1660
25 1 0.1362 -1.3734 1.9071
26 6 1.5788 -1.2142 3.4838
27 7 2.6997 -0.6342 3.8572
28 14 0.5609 -2.1668 4.7271
29 1 -0.6454 -2.7191 4.0600
30 1 1.3726 -3.2792 5.2831
31 1 0.1460 -1.2591 5.8267
32 1 -0.3633 0.5083 0.8932
33 1 -0.3633 0.5194 -0.8868
34 1 -0.3634 -1.0276 -0.0064
35 1 1.1456 -2.5014 -0.4959
36 1 0.2607 -4.4865 -0.4309
37 1 0.7597 -5.3471 -7.0031
38 1 -0.2739 -7.4454 -6.3220
39 1 4.0061 0.1474 -1.0994
40 1 3.9375 -1.3450 -2.0670
41 1 5.0412 -1.7697 0.1035
42 1 3.4987 -2.6531 0.0054
43 1 3.9904 0.0018 1.4316
44 1 3.6521 -1.5698 2.1984
45 1 2.9974 -0.7015 4.7779
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000993950261.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:10:46
Heat of formation + Delta-G solvation = 37.297294 kcal
Electronic energy + Delta-G solvation = -31104.118802 eV
Core-core repulsion = 26930.660489 eV
Total energy + Delta-G solvation = -4173.458313 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.159 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-43.85708 -41.03768 -40.02184 -39.11000 -38.84237 -35.53549 -34.23878 -33.84097
-33.31157 -32.50422 -31.40720 -30.27044 -27.83169 -26.79308 -25.55562 -25.33223
-23.80303 -23.41401 -22.31049 -21.69404 -20.31404 -20.07361 -19.18347 -18.55868
-18.16551 -18.01596 -17.87491 -17.02978 -16.92636 -16.35036 -16.09357 -15.65243
-15.36681 -15.12944 -14.95982 -14.78738 -14.55222 -14.48067 -14.39967 -14.25621
-14.19946 -14.11627 -13.48924 -12.89877 -12.85544 -12.66948 -12.37482 -12.34218
-12.24517 -12.09199 -11.85360 -11.75508 -11.59517 -11.29698 -11.23046 -10.96823
-10.90508 -10.72414 -10.45353 -9.86809 -9.15128 -8.55297 -7.76907 -5.22349
-0.25437 -0.13864 0.74919 0.96367 1.47592 1.50872 1.56342 1.62497
2.11922 2.32978 2.40933 2.57756 3.06975 3.38030 3.40364 3.66297
3.67904 3.75571 3.92768 4.06780 4.16067 4.25127 4.30964 4.47171
4.48443 4.56482 4.65735 4.74435 4.85952 4.99327 5.03250 5.09283
5.12414 5.21164 5.22643 5.30813 5.43378 5.54531 5.63916 5.68813
5.72661 5.80522 5.81653 5.88093 5.88585 6.49939 6.61651 6.74691
7.25206 7.32322 7.96321 8.48188 9.29557
Molecular weight = 345.16amu
Principal moments of inertia in cm(-1)
A = 0.013971 B = 0.003383 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2003.674459 B = 8275.032112 C = 9533.372886
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.156 3.844
3 H 0.032 0.968
4 C 0.148 3.852
5 H 0.089 0.911
6 N -0.691 5.691
7 C 0.604 3.396
8 O -0.584 6.584
9 C -0.318 4.318
10 C 0.139 3.861
11 N -0.312 5.312
12 N -0.368 5.368
13 C 0.373 3.627
14 N -0.572 5.572
15 H 0.457 0.543
16 C 0.229 3.771
17 C -0.323 4.323
18 C 0.542 3.458
19 O -0.551 6.551
20 C -0.114 4.114
21 C -0.127 4.127
22 C 0.177 3.823
23 N -0.596 5.596
24 C -0.241 4.241
25 H 0.084 0.916
26 C -0.048 4.048
27 N -0.936 5.936
28 Si 0.951 3.049
29 H -0.261 1.261
30 H -0.299 1.299
31 H -0.303 1.303
32 H 0.044 0.956
33 H 0.065 0.935
34 H 0.057 0.943
35 H 0.407 0.593
36 H 0.224 0.776
37 H 0.262 0.738
38 H 0.205 0.795
39 H 0.066 0.934
40 H 0.061 0.939
41 H 0.058 0.942
42 H 0.053 0.947
43 H -0.007 1.007
44 H 0.054 0.946
45 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.525 -4.261 -23.369 23.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.050 3.950
3 H 0.050 0.950
4 C 0.041 3.959
5 H 0.107 0.893
6 N -0.340 5.340
7 C 0.392 3.608
8 O -0.467 6.467
9 C -0.336 4.336
10 C -0.050 4.050
11 N -0.129 5.129
12 N -0.168 5.168
13 C 0.147 3.853
14 N -0.190 5.190
15 H 0.302 0.698
16 C 0.101 3.899
17 C -0.351 4.351
18 C 0.344 3.656
19 O -0.428 6.428
20 C -0.153 4.153
21 C -0.166 4.166
22 C 0.052 3.948
23 N -0.320 5.320
24 C -0.371 4.371
25 H 0.101 0.899
26 C -0.244 4.244
27 N -0.583 5.583
28 Si 0.782 3.218
29 H -0.185 1.185
30 H -0.227 1.227
31 H -0.231 1.231
32 H 0.063 0.937
33 H 0.084 0.916
34 H 0.076 0.924
35 H 0.244 0.756
36 H 0.240 0.760
37 H 0.277 0.723
38 H 0.222 0.778
39 H 0.085 0.915
40 H 0.079 0.921
41 H 0.076 0.924
42 H 0.072 0.928
43 H 0.011 0.989
44 H 0.073 0.927
45 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -2.124 -5.718 -23.464 24.243
hybrid contribution 0.157 0.446 1.923 1.980
sum -1.967 -5.272 -21.541 22.264
Atomic orbital electron populations
1.21721 0.94280 1.01836 1.00866 1.20870 0.94457 0.93497 0.86218
0.95037 1.21338 0.92672 0.83058 0.98788 0.89311 1.45646 1.61295
1.18198 1.08826 1.16803 0.77257 0.83138 0.83604 1.90666 1.53419
1.67938 1.34709 1.19483 1.23694 0.99795 0.90598 1.24690 0.90439
0.88838 1.01079 1.77584 1.26856 1.22525 0.85949 1.48285 1.46516
1.14300 1.07669 1.18911 0.92240 0.87102 0.87055 1.41461 1.54889
1.21870 1.00812 0.69833 1.23458 0.85174 0.84469 0.96800 1.21906
1.17480 1.03966 0.91782 1.18333 0.78645 0.81893 0.86702 1.90879
1.43813 1.26317 1.81749 1.21721 0.95586 1.00429 0.97519 1.21948
0.99540 0.99161 0.95949 1.20590 0.83332 0.95741 0.95158 1.44348
1.02847 1.65328 1.19519 1.19546 0.95330 1.35702 0.86497 0.89895
1.25688 0.98762 1.01171 0.98741 1.70166 1.25228 1.46521 1.16388
0.85437 0.78919 0.77918 0.79569 1.18450 1.22662 1.23113 0.93673
0.91573 0.92355 0.75610 0.75953 0.72261 0.77771 0.91544 0.92063
0.92366 0.92811 0.98915 0.92747 0.94650
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.09 7.73 71.98 0.56 -3.54 16
2 C 0.16 5.47 3.20 44.98 0.14 5.61 16
3 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16
4 C 0.15 4.39 2.32 45.07 0.10 4.49 16
5 H 0.09 2.52 7.58 -2.39 -0.02 2.50 16
6 N -0.69 -19.16 3.45 -445.98 -1.54 -20.70 16
7 C 0.60 15.93 7.76 86.49 0.67 16.61 16
8 O -0.58 -16.25 15.47 -4.31 -0.07 -16.32 16
9 C -0.32 -7.88 6.15 -20.02 -0.12 -8.00 16
10 C 0.14 3.63 11.47 85.66 0.98 4.61 16
11 N -0.31 -9.84 12.54 -56.31 -0.71 -10.55 16
12 N -0.37 -10.27 3.79 -315.76 -1.20 -11.46 16
13 C 0.37 8.21 7.78 132.61 1.03 9.24 16
14 N -0.57 -6.46 5.39 -191.04 -1.03 -7.49 16
15 H 0.46 3.87 7.78 -92.71 -0.72 3.15 16
16 C 0.23 0.91 11.25 83.30 0.94 1.85 16
17 C -0.32 -4.00 9.95 22.26 0.22 -3.78 16
18 C 0.54 14.50 7.70 84.91 0.65 15.15 16
19 O -0.55 -19.88 17.90 -4.73 -0.08 -19.97 16
20 C -0.11 -3.43 5.57 30.62 0.17 -3.26 16
21 C -0.13 -4.37 5.93 30.67 0.18 -4.18 16
22 C 0.18 7.80 5.30 86.36 0.46 8.26 16
23 N -0.60 -25.67 2.65 -675.21 -1.79 -27.46 16
24 C -0.24 -11.43 8.60 84.04 0.72 -10.71 16
25 H 0.08 3.72 6.20 -2.91 -0.02 3.70 16
26 C -0.05 -2.50 4.96 84.86 0.42 -2.08 16
27 N -0.94 -52.57 11.14 21.65 0.24 -52.33 16
28 Si 0.95 42.55 29.58 68.60 2.03 44.57 16
29 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16
30 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16
31 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16
32 H 0.04 1.59 7.63 -2.39 -0.02 1.57 16
33 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
34 H 0.06 1.79 6.38 -2.39 -0.02 1.77 16
35 H 0.41 11.77 6.70 -92.71 -0.62 11.15 16
36 H 0.22 4.79 7.48 -2.91 -0.02 4.76 16
37 H 0.26 -2.59 8.06 -2.91 -0.02 -2.61 16
38 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16
39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16
40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16
41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
42 H 0.05 1.86 7.53 -2.39 -0.02 1.84 16
43 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
44 H 0.05 2.78 6.05 -2.39 -0.01 2.76 16
45 H 0.24 13.58 8.31 -92.71 -0.77 12.81 16
Total: -1.00 -77.83 365.53 2.71 -75.12
By element:
Atomic # 1 Polarization: 16.60 SS G_CDS: -0.28 Total: 16.32 kcal
Atomic # 6 Polarization: 23.13 SS G_CDS: 7.13 Total: 30.27 kcal
Atomic # 7 Polarization: -123.98 SS G_CDS: -6.02 Total: -130.00 kcal
Atomic # 8 Polarization: -36.13 SS G_CDS: -0.15 Total: -36.28 kcal
Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal
Total: -77.83 2.71 -75.12 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000993950261.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.419 kcal
(2) G-P(sol) polarization free energy of solvation -77.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.297 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds